melanogaster TGTA-GG--AATAA-----------AC-----GTCTGAAGG--------TCGAAGC---TTTTGAAGTGCGGCGATAGCGA-TAGGC----------TTTGTGTCG--GGTGATTACG--
simulans GGTA-GG--AATAA-----------AC-----GTCTGAAGG--------TCGAAGC---TTTTGAAGTGCGGCGATAGCAA-AAGGC----------TTTGTGTCG--GGTGATTACG--
sechellia GGTA-GG--AATAA-----------AC-----GTCTGAAGG--------TCGAAGC---TTTTGAAGTGCGGCGATAGCGA-AAGGC----------TTTGTGTCG--GGTGATTACG--
yakuba TGTA-GGATAATAA-----------AC-----GTCTGAAGG--------TCGAAGC---TTTTGGAGTGCGGCGATAGCGA-AAGGC----------TTTGTGTCG--GGTGATTACG--
erecta TGTG-GG--AATAA-----------AC-----GTCTGAAGG--------TCGAAGC---TTTTGCAGTGCGGCGATAGCGA-AAGGC-----------TTGTGTCG--GTTGATTACG--
ananassae TGTT-GT--AGGAA-------TTTTAG-----GTCTGAAAG--------TTGAAGC-TATTTTGGAGACAATTTGCAGCGA-CAAGCGTTGTTCGTTTTTTTTTTG--GAGAATAATAAA
pseudoobscura TGTA-GG--AATAA-----------AC-----GCTTGAAAG--------TTGAAGC---TTTT---GTGTTAGAAGAATAT-AAAAT----------TTCGGATCG--ATCGGATACGGG
persimilis TGTA-GG--AATAA-----------AC-----GCTTGAAAG--------TTGAAGC---TTTT---GTGTTAGAAGAATAT-AAAAT----------TTCGGATCG--ATCGGATACGGG
virilis GCTA-GG--AATTA-----------ACGT---GTTTGTTAGCTTTTGGTTAGAATA----------------CAAGACTGC-AAAGC------AATATTTATGAAG--GGTGGGGGCTAC
mojavensis TATATAG--AATTATACAAGAACGTAGGT---GTTTTATAGAAATAAGATAGGGTAAGCTATT----CGTGGCAAGACTGCAAAAGC------TTTAACTATGAAGAAGCTGGAGCTTGA
grimshawi GATAGAG--GAGTA-----------AAATTGGGTTTTCTTG--------TTGAACT----------------TTCGAGTGC-AAAGC---------ATTTAAGAAGCAGCTTGTTTCGAG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---------------------------ATAA-TA----C--TTTCGG----CTATCC-------A-----GGGGTGGTTAAA-TAAATAC--------------GCCAACAACTTACAGC
simulans ---------------------------ATAA-TA----C--TTTCGG----CTATCC-------A-----GGGGTGGTTAAA-TAAATAC--------------GCCAACAACTTACAGC
sechellia -----------------------------AA-TA----C--TTTCGG----CTATCC-------A-----GGGGTGGTTAAA-TAAATAC--------------GCCAACAACTTACAGC
yakuba ---------------------------ATAA-TA----C--TTTCGG----CTATCCGGGATCCG-----GGGGTGGTTAAA-TAAATAC--------------GCCAACAACTTACAGC
erecta ---------------------------ATAA-TA----C--TTTCGG----CTAGAC-------------AGGGTGGGTAAA-TAAATAC--------------GCCAACAACTTGCACC
ananassae AAATAG--------------------CATAA-TACTTTC--TTTCGG----CTATCC-------ATGGGGGGTGTGGTTGAA-TAAATATATATATGATTAAAAGCCAACAACTTACAGC
pseudoobscura ATATCC--------------------GCTAGCCG----C--TTTCCGATTTCTATCT-------T-----CGGATGGTTAAA-TAAATAC--------------GCCAACAACTTACATA
persimilis ATATCC--------------------GATAGCTG----C--TTTCCGATTTCTATCT-------T-----CGGATGGTTAAA-TAAATAC--------------GCCAACAACTTACATA
virilis CCCTAAGAAGGCCTGCAGAAAAGGCGAATAA-TA----C--TTT-------CTGTGT-------------AGC----TTAAA------------------------TAACAACGGAGA-A
mojavensis GCCCAACTAAAC--------------GATAA-TA----CTTTTT-------TTATAT-------------AGT----TGAAAATAAATAC----TTGCTAGAGGGCCAACAGCTTTGA-A
grimshawi CCGTAAGAAGGAT-------------AATAA-TA----C--TTT-------CTATGT-------------GGG----TTAAA-TAAATAC----TCTCGTCAG---CAAGAACTTAGA-T
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TCGAAT-TCG------CTAC-GG----ATGGGTC---TTAC-TCTAGGTTAGGATTA----T-------ACGTATATATATATATATTTTTAGAGATATATACAA--AAACA----TATG
simulans TCGAAT-TCG------CTAC-GG----ATGGATT---TTAG-TCTAGGTTAGGGTTA----T-------AC--ATATATATATATGTTTTTAGAGATATATACAA--AAACA----TATG
sechellia TCAAAT-TCG------CTAC-GG----ATGGATC---TTAG-TCTAGGTTAGGGTTA----T-------AC--ATATATATATATGTTTTTAGAGATATATACAA--AAACA----TATG
yakuba TCGAAT-TCG------CTAT-GG----ATGGATC---TTAC-GCTAGATTAGGATTAGGGTT-------AT--ATATATATATATATATTTTTAGATATATACAA--AAACA----TATG
erecta TCGAAT-TCG------CTGC-GG----ATGCATC---TTAC-TCTAGGTTAGGGTTAGGGTT-------A----------------------TAGATATATACAA--AAACA----TATG
ananassae TCGAAT-TCG------CTAC-GGATACATGTATC---TTACGGATAGCTAGGGGTTA----C-------AT--ACATACATATTTAC-----AAAATACATACAGACAAACACGAGTGTA
pseudoobscura TCGAAT-TCG------CTAG-AG----ATA---C---TTAT----------GGTTTA----T-------AT--GCTAATGTATA-------------ATAGATGA--TAATA----TAT-
persimilis TCGAAT-TCG------CTAG-AG----ATA---C---TTAT----------GGTTTA----T-------AT--GCTAATGTATA-------------ATAGATGA--TAATA----TAT-
virilis GAGAAT-TTG--AAGCTTAT-AG----ATAGCATACGATAC-GATACGATACGATAC----TTTACGAGACA-ATAGATGTATATTACAATTATATCACATAAAC--ACAGT----TTTG
mojavensis GAGAAC-TCGATAAGCTTAA-GG----ATACGAT---ATAC-GAT---ATACGATAT----T-------ACG-ATATACG-ATATTACGAAATTACGATATTATT--AGAGT----TATG
grimshawi TAGAACGTTG--AAGCTTATCAA----ATACAATACAATAC-GATACGATAAGAT--------------ACA-ATATATATATA----------GGTATATGTAT--AGATA----GTTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TACGCTACAATTATATCAC-ATG-AAAACCA-TTTGTA--------CGCC---------------CTCGAATATTGCACGCCCCCGTCA-----------GAAGGAGTAAC---------
simulans TACGCTACAATTATATCAC-ATG-AAAACCA-TTTGTA--------CGCC---------------CTCGATTATTGCACGCCCCCGTCA-----------GAAGGAGTAAC---------
sechellia TACGCTACAATTATATCAC-ATG-AAAACCA-TTTGTA--------CGCC---------------CTCGAATATTGCACGCCCCCGTCA-----------GAAGGAGTAAC---------
yakuba TACGCTACAATTATATCAC-ATG-AAAACCA-TTTGTA--------CGCC---------------CTCGAATATTGCACGCGCCCGTCAGA-----AAGAGGAAGAGTAAC---------
erecta TACGCTACAATTATATCAC-ATG-AAAACCA-TTTGTA--------CGCC---------------CCCGAATATTGCACGCCCCCGTCA------------GAAGAGTAAC---------
ananassae TGCACTACAATTATATCAC-ATGAAAAACCATTTTGTA--------CGCCTCTGACCTCTGACCTCTCGATTATTGCACGCCCCCGTTTAA---GTACGAGGAGGAGATAC---------
pseudoobscura -----TACAATTATATCAC-ATG-AGAACCT-TTTGTACCCTCCTCCGCCCCCCTCCCCCTGCCGTTTGTATTGCACACACCCCCGCTC------------------TGTT---------
persimilis -----TACAATTATATCAC-ATG-AGAACCT-TTTGTACCCTCCTCCGCC-----CCCCCTGCCGTTTGTATTGCACACACCCCCGCTC------------------TGTT---------
virilis TACGCCGCACAAAT-TCACAATC-CACCAGC---------------CATC------AGCCAGGAGCGAGGGGATGGCGCCTATTAATAT----TGCACACTGAGGACCAGC---------
mojavensis TATATTACAATTATATCAC-ATG-AAACAGT-TTTGTA--------CGCC------GCACAAATTCACGAAGATTCCAGCAGCCAGCG------AAAGGCTGGAGGATGGCGCCTTTTCT
grimshawi TATATTACAATTATATCAC-ATG--AACATT-TTTGTA--------CATC------GCACAAAACTTTACAAAATCCATTTCCTTACATATTGCACACACTTGGAACCAGC---------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ------------------------------CCCTT----------------ATGGGTAACCAT---------------------------------------------TGGTCAG-----
simulans ------------------------------CCCTT----------------ATGGGTAACCAG---------------------------------------------TGGTCAG-----
sechellia ------------------------------CCCTT----------------ATGGGTAACCAG---------------------------------------------TGGTCAG-----
yakuba ------------------------------CCCTTGTGTGTGTGGGTAACCACTAGTGACTGA---------------------------------------------TGGTCAT-----
erecta ------------------------------CCCT-----------------ATGGATGAGCGG---------------------------------------------TGGTCAC-----
ananassae ------------------------------TTTTT----------------ATT--CTCCCTA---------------------------------------------TAATAAGATTAA
pseudoobscura ------------------------------CGCCG----------------GCCGACCGATTG---------------------------------------------CAGCCCC-----
persimilis ------------------------------CGCCG----------------GCCGACCGATTG---------------------------------------------CAGCCCC-----
virilis ------------------------------CGGGT----------------GTAGGGAGCAGGAAGCAGGACGCGGAGAGCAGG---------GAGC------------GGTAGC-----
mojavensis TCTATATATTGCACACTTAGGACCAGCCGGGGAGT----------------GTGGGGAGCAGG-----GGAGCTGGGGAGCAGGCGATCAGACGAGCTGGGGGGAAGCTGTTTGC-----
grimshawi ------------------------------CGGGA----------------GTGGGGG--AGT-----TGATGTGGAGATGAGG---------------GGGGAGATGTGGAGCC-----
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --CGCTTAGGGGATCTGCCCGTTCATGCGCATCTCGAGCTCCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTGGGCCATCAGCTGCAGTGCCAGCGGATTTTTG
simulans --CGCTTAGGGGATCTGCCCGTTCATGCGCATCTCCAGCTCCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTGGGCCATCAGCTGCAGGGCCAGCGGATTCTTG
sechellia --CGCTTAGGGGATCTGCCCGTTCATGCGCATCTCGAGCTCCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTGGGCCATCAGCTGCAGGGCCAGCGGATTCTTG
yakuba --CGCTTAGGGGATCTGCCCGTTCATGCGCATCTCGAGCTCCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTGGGCCATCAGCTGCAGGGCCAGCGGATTTTTG
erecta --CACTTAGGGTATCTGGCCGTTCATGCGCATCTCGAGCTCCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTGGGCCATCAGCTGCAGGGCCAGCGGATTCTTG
ananassae TTTCTTTAGGGGATCTGGCCGTTCATGCGCATCTCGAGCTCCTCCTCCTCTTTGGTCAGCGGAACGGTGGTGTGATTGTAGAGTCCTTGGGCCATCAGCTGGAGGGCCAATGGATTCTTG
pseudoobscura --TTTTTAGGGGATCTGGCCGTTCATGCGCATCTCGAGCTCCTCCTCCTCTTTGGTCAGTGGCACCGTCGTGTGGTTGTACAGTCCCTGGGCCATCAGCTGGAGGGCCAGGGGGTTCTTG
persimilis --TTTTTAGGGGATCTGGCCGTTCATGCGCATCTCGAGCTCCTCCTCCTCTTTGGTCAGTGGCACCGTCGTGTGGTTGTACAGTCCCTGGGCCATCAGCTGGAGGGCCAGGGGGTTCTTG
virilis --CATTTACGGAATCTGCCCGTTCATGCGCATCTCTAGCTCCTCCTCCTCTTTGGTCAGCGGCACTGTCGTATGGTTGTAGAGACCCTGGGCCATCAGCTGGAGGGCCAGCGGATTCTTG
mojavensis --CATTTACGGTATCTGGCCGTTCATGCGCATCTCAAGCTCCTCCTCCTCTTTGGTCAGCGGCACCGTCGTATGATTGTACAGACCCTGGGCCATCAGCTGCAGGGCCAGAGGATTCTTC
grimshawi --TTCTTACGGTATCTGGCCGTTCATGCGCATCTCGAGCTCCTCCTCCTCTTTGGTCAGCGGCACCGTCGTATGATTGTACAGACCCTGGGCCATCAGTTGGAGGGCGAGGGGATTTTTC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GAGCCCGTCGACTTCTTGATCTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGCGCCTCGTTCAGGCCCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATTC
simulans GAGCCCGTCGACTTCTTGATCTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGCGCCTCGTTCAGGCCCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATTC
sechellia GAGCCTGTCGACTTCTTGATCTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGCGCCTCGTTCAGGCCCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATTC
yakuba GAGCCCGTCGACTTCTTGATCTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGGGCCTCGTTCAGGCCCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATTC
erecta GAGCCCGTCGACTTCTTGATCTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGCGCCTCGTTCAGGCCCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATTC
ananassae GAGCCGGTGGACTTCTTGATCTTGGCCCGCTTATTCTGGAACCAGATCTTGATCTGGGCCTCATTCAGGCCCAATTCGGAGCTCAGTTGCTGGCGTCGGCGCTCGGTCAGATAGCGATTC
pseudoobscura GAGCCGTTGGACTTTTTGATCTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGGGCCTCGTTCAGGCCCAGCTCTCCGCTCAGCTGCTGGCGTCGCCGTTCGGTCAGATAGCGATTC
persimilis GAGCCGTTGGACTTCTTGATCTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGGGCCTCGTTCAGGCCCAGCTCTCCGCTCAGCTGCTGGCGTCGCCGTTCGGTCAGATAGCGATTC
virilis GAGCCCGTCGACTTCTTGATTTTGGCGCGCTTGTTCTGGAACCAGATCTTGATCTGTGCCTCGTTCAGGCCCAGCTCGGAGCTCAGCTGCTGACGGCGTCTTTCGGTGAGGTAGCGATTC
mojavensis GAGCCCGTCGACTTCTTGATTTTGGCGCGCTTGTTCTGGAACCAGATCTTGATCTGTGCCTCGTTCAGGCCCAGCTCGGAGCTCAGCTGCTGGCGTCGTCGTTCGGTGAGGTAGCGATTC
grimshawi GATCCAGTCGACTTCTTGATTTTGGCTCGCTTATTCTGGAACCAGATCTTGATCTGTGCCTCATTCAAACCCAGCTCTCCGCTCAGCTGCTGGCGGCGTCTTTCGGTGAGGTAGCGATTC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TCGTTGAACTCCCGCTGTAAGTGGAAGA---------------------AATG-GA--ATGC------------TGGATGAGTTTCGGA--TGGCA---------AGGATATCCATG---
simulans TCGTTGAACTCCCGCTGTAAGTGGAAGA---------------------AATG-GA--ATGC------------TGGATGAGTTTCGGA--TGGCA---------AGGATATCCATG---
sechellia TCGTTGAACTCCCGCTGTAAGTGGAAGA---------------------AATG-GA--ATGC------------TGGATGAGTTTCGGA--TGGCA---------AGGATATCCATG---
yakuba TCGTTGAACTCCCGCTGTAAGTGGAAGA---------------------GATG-GAATATGC------------TGGATGAGTTTCGGA--TGGCA---------AGGATATCCATG---
erecta TCGTTGAACTCCCGCTGCAAGTGGAAGA---------------------AATG-GA--TTGC------------TGGATGAGTTTCGGA--TGGCA---------CGGTTATCCATG---
ananassae TCGTTGAACTCCCGCTGTAAATAGAAGA--------------------GGATG-GA--ATTC------------CGGATGAGTTTCAGA--TGACA--------TTAGAGAGCCCTA---
pseudoobscura TCGTTGAACTCCCGCTGCAAGTAGAAAGATC----------------AGAGAG-GA--GTCT------------GGGATGAGTACAGAG--GCACA---------GAGATACGGATG---
persimilis TCGTTGAACTCCCGCTGCAAGTAGAAAGATC----------------AGAGAG-GA--GTCT------------GGGATGAGTACAGAG--GCACA---------GAGATACGGATG---
virilis TCATTGAATTCGCGCTGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCAA--ATGG-----TGAGAATCGGCTGCGCAATAAA--AGGTAACTAGGGTCGGGTCAGCTCTGAGC
mojavensis TCATTGAATTCGCGCTGTTAGAGAGAGCGGAAGAGAGAAAGAGAGAGAGAGAG-AG--ATGA------GCAAATTGTGTGCGCAATAAA--AGGCAACTAGGGTCGGGTCAGGTCTG---
grimshawi TCATTGAATTCGCGCTGTAAGAGACAAACAGAAAGAGAAAGAGAGAGAGAGAG-AG--GTGAGATTGTGTGGATTGGATGCGCAATAAAAGAGGCAACTAGGGTCGGGTCAGGTCTG---
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---------------------------TTGTA-TAGT--------------------CA-GGTAGGGAAAATCAATTATTTGCGGTTTC----------GGC------------------
simulans ---------------------------TTGTA-TAGT--------------------CA-GGTAGGGAAAATCAATTATTTGCGGTTTC----------GGC------------------
sechellia ---------------------------TTGTA-TAGT--------------------CA-GGTAGGGAAAATCAATTATTTGCGGTTTC----------GGC------------------
yakuba -------------TTGTATA-------TAGTG-TAGT-----------GTAGG----TA-GGTAGGGAAAATCAATTATTTGCGGTTTT---------GGGC------------------
erecta ---------------------------TGGTG-CAGT------------CAGT----CA-GGTAGGGAAAATCAATTATTTGCGGTTTC---------GGGC------------------
ananassae ---------------------------AACCC-CAGG--------------------TAGGGTAAGGAAAATCAATTATTTGCGGTTGC--TT-----GGAC------------------
pseudoobscura ---------------------------GGATC-TACTATGGGAGGCTGGTAGG----TA-GGTAAGGCAAATCAATTATTTGCGGTTTGAGTTGAAAGAGGCACCCC-GAAGACAGACTG
persimilis ---------------------------GGATC-TACTATGGGAGGCTGGTAGG----TA-GGTAAGGCAAATCAATTATTTGCGGTTTGAGTTGAAAGAGGCACCCC-GAAGACAGACTG
virilis CAAAGAGAACGAGTGCGATAATGTTTTCAGTG-TAGG------------TAG-----AG-GCTGAGGCAAATCAATTATTTGCGGTTTA-GTTGAAAGACG-------------------
mojavensis ---------------------------CTGTGCTAGG------------TAG-----AA-TCTGAGGCAAATCAATTATTTGCGGTTTA-GTTGAAAGACA-------------------
grimshawi --CAGAAAAACAGTACAACG-------TTATG-AAGA------------TAGGCACAGG-GCTGAGGCAAATCAATTATTTGCGGTTTA-GTTGAAAGACGACGACTGTGTGGCACTGTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ----------------------------------CGAGCGTGGCTGATTGGTTAAGTACGG-------ACGGG----------------------ACACC--------------------
simulans ----------------------------------CGAGCGTGGCTAATTGGTTAAGTACGG-------ACGGG----------------------ATGT---------------------
sechellia ----------------------------------CGAGCGTGGCTAATTGGTTAAGTACGG-------ACGGG----------------------ATGT---------------------
yakuba ----------------------------------CGAGCGTGGCTAATTGGTTAAGTACGGAC-ACGGACGGG----------------------ATGC---------------------
erecta ----------------------------------CGAGCGTGGCCAATTGGTTAAGTACGGC------AGGGG----------------------ATGC---------------------
ananassae ----------------------------------TGAGCGTGTCAAATTGGTTAAGTACGGAG-----ACAGG----------------------ATGC---------------------
pseudoobscura CCAG------TAGATGGAAGTCCG-GGTGAGATATGAGCGTGTCTAATTGGTTAAGTACGGACCGGGGACAGGGGACCGGGGACCGAGGCAGGACATGC---------------------
persimilis CCAG------TAGATGGAAGTCCG-GGTGAGATATGAGCGTGTCTAATTGGTTAAGTACGGACCGGGGACAGGGGACCGGGGACCGGGGCAGGACATGC---------------------
virilis ---------------GGTAGTGTG-AGTGAAATATGAGCATGTCCAATTGGCTTAGT-----------CGAGG----------------------ACACT--------------------
mojavensis ---------------TGTAGTGTG-AGTGAAATATGAGCATGTCTAATTGGCTTAGT-----------TGAGG----------------------ACACTG-----GCATGGCCGTGCCG
grimshawi CGGCACTGTGTGGCAGGCAGTGTGTTGTGAAATATGAGCATGTCTAATTGGTTTAGT-----------CGAGG----------------------ACACTGTGGACGACTGGACGACTCG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -----------ACATTGCCAGGATGCA----------TTAGCAGCGGGCG---------------------------------GTGTCAATATTTTGG-TGCAAATATGACACAACAAGC
simulans ------------GGTGGCCAGGATGCA----------TTAGCAGCGGGCG---------------------------------GTGTCAATATTTTGG-TGCAAATATGACACAACAAGC
sechellia ------------GGTGGCCAGGATGCA----------TTAGCAGCGGGCG---------------------------------GTGTCAATATTTTGG-TGCAAATATGACACAACAAGC
yakuba ------------GGTGGCCAGGATGCA----------TTAGCAGCGGGCG---------------------------------GTGTCAATATTTGGG-TGCAAATATGACACAACAAGC
erecta ------------GGTGGCCAGGATGCA----------TTAGCAGCGGGCG---------------------------------GTGTCAATATTTTGG-TGCAAATATGACACAACAAGC
ananassae ------------AGTCGGTAGGA-GCAGGATATGCTCCTAACAGCAGGCAGTCAGGTCAGTCCCGGCACAAG-----TAATGTGTGTAAATATTTTGG-TGAAAATATGACACAACAA--
pseudoobscura ------------GTTTGCCAGGATGCA----------ATCGCCGCGGGGG---------------TCTCGGA-----AAATATGTGTAAATATTTTGG-TGCAAATATGACACAACAAGG
persimilis ------------GTTTGCCAGGATGCA----------ATCGCCGCGGGGG---------------TCTCGGA-----AAATATGTGTAAATATTTTGG-TGCAAATATGACACAACAAGG
virilis ----------------GCCAGGATGCA-----------GCCCAGCGGGCG---------------GCCACAC-----TAAAGTGTGTAAATATTTTGGCTGTAAATATGACACAACAC--
mojavensis TCGCCGTCGCC--GTCGCCAGGATGCA-----------GCGCAGCGGGCG---------------GCGCAGCGTGTGTAAAGTGTGTAAATATTTTGGTTGTAAATATGACACAACA---
grimshawi GTGCGGTTGCCAGGTCGCCAGGATGCA----------CGCACAGCGGGAC---------------ACCCACC----GTAAAGTGTGTAAATATTTTGGCTATAAATATGACACAACAA--
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster G---TAGGGCAATTGGATATGGATA-------------------TGGAT--GGATATTG-----GTATA--------ACCATATAACCATATATGGAAAAAAGAACTGAATCTCACCTTA
simulans G---TAAGGCAATTGGATATGGATA-------------------TGGAT--GGATATTG-----GTATAGGGTATACACCA-A-AACCATATATGGAAAAAGGAACTGAATCTCACCTTG
sechellia G---TAGGGCAATTGGATATGGATA-------------------TGGAT--GGATATTG-----GTATAGTGTATACACCATA-GCCCATATATGGAAAAAGGAACTGAATCTCACCTTG
yakuba G---TAGGGCAATTGGATATGGATA-------------------TGGATAGGGATA-TG-----GTA----------ACCATA----TATGGATGGAAAATGGAACAGAATCTCACCTTG
erecta G---TA-GGCAATTGGATAGGGATT-------------------CGGAT-------------------------------------------ATGGTGTATAGAACAGATTCTCACCTTG
ananassae -------------TGGAT-----TT-------------------TGGAA--GGATATTG-----G---------------------------ATG----------------CTTACCTTG
pseudoobscura GATCTATGGC--TTCTACATGGGTC-------------------TGTGT--GAGTGCTT-----GTGTGTG---------------------ATG----------------CTTACCTTG
persimilis GATCTATGGC--TTCCACATGGGTC-------------------TGTGT--GAGTGCTT-----GTGTGTG---------------------ATG----------------CTTACCTTG
virilis -TGCTGGGATGCCTGTGTGTGTGTGTG-----------------TGTGT--GGGTATCT-----GGGAC----------------------------------------TGCTTACCTTG
mojavensis -TGGAGGGATAACTGAGATGGAGTGGGATGGAGTGGGATAGCCTGGTAT--GGGCTGTTATGGAGAGGA----------------------------------------TGCTTACCTTT
grimshawi ----------------------------------------------------------------------------------------------------------TGATGCTTACCTTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AGGCGGGCCAACTGCTCGCTGGAGAACGCGGTGCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGCGGTAGCGGGGTCCTGGAA-----TAAACAA-AAACAC-
simulans AGGCGGGCCAACTGCTCGCTGGAGAAGGCGGTGCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGCGGTAGCGGGGTCCTGTAA-----TAAACAA-AAACAC-
sechellia AGGCGGGCCAACTGCTCGCTGGAGAAGGCGGTGCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGCGGTAGCGGGGTCCTGTAA-----TAAACAA-AAACAC-
yakuba AGGCGGGCCAACTGCTCGCTGGAGAAGGCGGTGCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGCGGTAGCGGGGTCCTAAAA-----TGAACAGAAAACAC-
erecta AGGCGGGCCAACTGCTCGCTGGAGAAGGCGGTGCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGCGGTAGCGGGGTCCTGGAA-----TACACGG--AACAC-
ananassae AGGCGGGCCAATTGTTCGCTGGAGAAGGCGGTGCGTGGTCGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGCGGTAGCGAGGTCCTGCAA-----TGCGAAA--GAGAG-
pseudoobscura AGGCGGGCCAATTGCTCGCTGGAGAAGGCCGTGCGTGGCCGCTTCTCATCATTGGTCTTGTCCTTTGGCTGTTTGGGGCGGCGGTAGCGGGGTCCTTTAAG----TAAAAGA-GAAAAC-
persimilis AGGCGGGCCAATTGCTCGCTGGAGAAGGCCGTGCGAGGCCGCTTCTCGTCATTGGTCTTGTCCTTTGGCTGTTTGGGGCGGCGGTAGCGGGGTCCTTTAAG----TAAAAGA-GAAAAC-
virilis AGGCGTGCCAATTGCTCGCTGGAGAAGGCGGTGCGTGGACGCTTCTCGTCATTGGTCTTGTCCTTTGGTTGCTTGGGGCGACGATAGCGGGGTCCTGCAA----------AG--AATAA-
mojavensis AGGCGTGCCAATTGCTCGCTGGAGAAAGCAGTGCGTGGTCGCTTCTCATCATTGGTCTTGTCCTTTGGTTGCTTGGGGCGACGGTAGCGGGGTCCTGCAAT--GCCATACAA--AAGAG-
grimshawi AGGCGTGCCAACTGTTCGCTGGAGAAGGCGGTGCGTGGACGCTTCTCGTCATTGGTCTTGTCCTTTGGTTGCTTGGGGCGACGATAGCGGGGTCCTGCAAGAAGCCAAAAAA--AAAAGA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -------------------GAG-AAATAC----GTTAG-----TTC-------TATTTGCAT-A------AATGCGC------------------------CACATACTATTAATAATAT
simulans -------------------GAG-AAATAC----GTTAG-----TTC-------TATTTGCAT-A------AATGCGC------------------------CACATACTATTAATAATAT
sechellia -------------------GAG-AAATAC----GTTAG-----TTC-------TATTTGCAT-A------AATGCGC------------------------CACATACTATTAATAATAT
yakuba -------------------GAG-AAATAC----GTTAG-----TTC-------TATTTGCAT-A------AATGCGG------------------------CACATACTATTAATAATAT
erecta -------------------GAG-AAATAC----GTTAG-----TTC-------TATTTGCAT-A------AATGCGG------------------------CACACACTATTAATAATAT
ananassae -------------------AAA-AAATATAAAAGTTAG-----TCT-TGGCGGTATTTGCATAA------AATGTTC------------------------CACATACTATTAATAATAT
pseudoobscura -------------------GGA-G---------TTTAG-----TTTTTGGACGCATTTGCAT-A------AATGTCT------------------------CACATGTGATTAATAATAT
persimilis -------------------GGA-G---------TTTAG-----TTTTTGGCCGCATTTGCAT-A------AATGTCT------------------------CACATGTGATTAATAATAT
virilis -------------------TAGAAAA-------GTTAG-----TCG---AGC------GAAA-G--AAGTTATGGCT-------------------------GCATATAATTAATGTTAT
mojavensis -------------------TAG-AAA-------GTTAG-----TCG---AGCGTGCTTGAAA-GCAAAAGAATGTCTCCTCCATCCCCCTCACCCAAAACTCGCATATAATTAATGATAT
grimshawi AAAAAACGAAAAAAGCAAATAG-AAA-------GTTAGCATATTTG---AACATAATCCCAC-A--TACTTATGTCT-------------------------GCATATAATTAATGATAT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TAATGATTCAATTAGCATATG---------------------------TCTGGG------CGGAATTCCTC------------------------GGCCGGAGCTGGAGCTCCC------
simulans TAATGATTCAATTAGCATATG---------------------------TCTGGG------CGGAATTCCTC------------------------GGCCGGAGCTGGAGCTCCC------
sechellia TAATGATTCAATTAGCATATG---------------------------TCTGGG------CGGAATTCCTC------------------------GGCCGGAGCTGGAGCTCCC------
yakuba TAATGATTCAATTAGCATATG---------------------------TCTGCG------CGGAATTCCTCGGCCGGTGCTGGAACTGGAGCTGTAGCTGTAGCTGGAGCTCCC------
erecta TAATGATTCAATTAGCATATG---------------------------TCTGGG------CCAAATTCCTC------TGCCGGAGCTGGAGCCGGAGCTGGAGCTGGTGCTCCC------
ananassae TAATGATTTAATTAGCATATG---------------------------TCTGGGGCGGAATGGCATTCTTT-------------------------------------TCTTTT------
pseudoobscura TAATGATTTAATTAGCATATG---------------------------CCT---------CTAGACCCCTA-------------------------GTCGGAGCTCTTTCTTTCGCTATT
persimilis TAATGATTTAATTAGCATATG---------------------------CCT---------CTAGACCCCTA-------------------------GTCGGAGCTCTTTCTTTCGCTATT
virilis TAATGGTTTAATTAGCATATA---------------------------------------CTAAA------------------------------------AACTA----ATAA------
mojavensis TAATGGTTTAATTAGCATATA------------------GTATGTATGTTTGCC------CCAGA------------------------------------CGCTGCTTTCTCG------
grimshawi TAATGGTTTAATTAGCATATATATACTCGTGGTATGTGTGTATGTGTGTGTGTG------TTGAAGTTGCC-----------------------------TCGTTGCTTTCTCA------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --------TTTCGCGTGCTGGCGGGGAA--------------------GTGTTCAATTTGTCAGCTGTCAGCGCAAGAGAAGAGTAGAACTCCGGCGAG-TTAAC---------------
simulans --------TTTCGCGTGCTGGCGGGGAA--------------------GTGTTCAATTTGTCAGCTGTCAGCGGAAGAGAAGAGTAGAACTCCGGCGAG-CTAAC---------------
sechellia --------TTTCGCGTGCTGGCGGGGAA--------------------GTGTTCAATTTGTCAGCTGTCAGCGGAGGAGAAGAGTAGAACTCCGGCGAG-CTAAC---------------
yakuba --------TTTCGCGTGCTGGCGGGGAA--------------------GTGTTCAATTTGTCAGCTGTCAGCGGAAGAGCGGAGAAGAACTCCGCCAAG-CTAAC---------------
erecta --------TTTTGCGTGCTGGCGGGGAA--------------------GTGTTCAATTTGTCAGCTGTCAGCGGAGGC----AGAGGAACTCCGGCGAG-CTAAC---------------
ananassae --------CTTTGCGTGCTGGCCGGGAA--------------------GTGTTCAATTTGTCAGCTGTCAGCGTTGGAAAGAAGT-----CCCGACCGC-CTAAC---------------
pseudoobscura TCCCAGTTTCTTGCGTGATGGCGGGGAA--------------------GTGTTCAATTTGTCAGCTGTCAGAGG------------GCTCCCGGGCGGGTCTAAC---------------
persimilis TCCCAGTTTCTTGCGTGATGGCGGGGAA--------------------GTGTTCAATTTGTCAGCTGTCAGAGG------------GCTCCCGGGCGGGTCTAAC---------------
virilis --------AAAAAACTTGTGGCATGCAACGGCCGA--------GCCGCGTGTTCAATTTGTCAGCTGTC----------------AGAGCTGCGTCTAG-CGAACCAAGCGGAAG-----
mojavensis --------CATTTACTTGTGGCATGCAACGAGCGAGCGGCTCTGCCGCGTGCTCAATTTGTCAGCTGTCAGAG----------CAAAAGTCAAGTCAAG-CGAAAATGACTTAATAATCC
grimshawi --------ACGAACGTTGTGGCATGCAA-------------------CGTGTTCAATTTGTCAGCTGTCA--------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -GAACC-------------------------CAAAGGTCTAC--------------------------------------GGCATATTTTAGG--CAAATGAT------TTGCCAGC---
simulans -GAACC-------------------------CAAAGGTCTAC--------------------------------------GGCATATTTTAGG--CAAATGAT------TTGCCAGC---
sechellia -GAACC-------------------------CAAAGGTCTAC--------------------------------------GGCATATTTTAGG--CAAATGAT------TTGCCAGC---
yakuba -GAACCCGAA-CCCGACTCCGTACCGGAACGCAAAGGTCTAC--------------------------------------GGCATATTTTAGG--CAAATGAT------TTGCCAGC---
erecta -GAACC-------------------------CAAAGGTTTAC--------------------------------------GGCATATTTTAGG--CAAATGGT------TTGCCAGCG-G
ananassae -GAACG-------------------------CCAA---------------------------------------------GGCATATTTTAAG--CAAATGAT------TT-CCATT---
pseudoobscura -GAACTCGGGTCTCGGCCTCGAGTC------CGGGAATGTGC------------------------CAGGCAGGCAGGCAGGCATATTTTAGG--CAAA---------------------
persimilis -GAGCTCGGGTCTCGGCCTCGAGTC------CGGGAATGTGCCAGGCAGACAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCATATTTTAGG--CAAA---------------------
virilis -GAACG---------------------------------------------------------------------------GCCCGTTCCGGG--CAGGGAACGAGGCACGACATTCGCC
mojavensis CAAACT---------------------------------------------------------------------------GCTTAATTCATATTTAGCTAAT------TGACAAACG--
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TAGCC-AACTC---TCTAATTA---------GCGA----CTAAGTCCAAGTCACCGG--CTAATTGG------CAACGCGGCACCGCAGCAATC--------------------------
simulans TAGCC-AACTC---TCTAATTA---------GCGA----CTAAGTCCAAGTCACCGG--CTAATTGG------CAACGCGGGACCGCGGCAATC--------------------------
sechellia TAGCC-AACTC---TCTAATTA---------GCGA----CTAAGTCCAAGTCACCGG--CTAATTGG------CAACGCGGGACCGCGGCAATC--------------------------
yakuba TAGCC-AACTC---TCTAATTA---------GCGA----CTAAGTCCAAGTCAGCGG--CTAATTGG------CAACTTGGTACGGCAGCGATG--------------------------
erecta TCGCCAAACTC---TCTAATTA---------GCGA----CCAAGTCCAAGTCAGCGG--CTAATTGG------CAACTCGGAATCGCAGCGGTA--------------------------
ananassae TCTCCCCACCC---CCC-----------------A----CTAGTTCCTAGGCACT----CTAATTAG------CAAGTTAGTCTCTAGAGACTC------------------TAAGTCGG
pseudoobscura TTTTC-AGCCG---TCTAATTA---------GTGGTGTTCTCGGTTC---TCAAT----CTAATTGG------CAGTGCGAACCATCCACGATAGATAGATAGATGGATAGATAGATAGG
persimilis TTTTC-AGCCG---TCTAATTA---------GTGGTGTTCTCGGTTC---TCAAT----CTAATTGG------CAGTGCGAACCATCCACGATAGATGGATAGATAGATAGATAGATAGG
virilis ATTTC-AGCCCGACTTTAATTAATATGATGAGCGC----CAAAGTTCAGAGGGCCAGTTCAAAGCAGACAGACAAACCCGAGAATGACTTAATA--------------------------
mojavensis ATTTC-TACTC----TTAGCTAAT--------TGC----C--GGCTCAGGG-------TCTAAGCCG--------AGCTGAGGTTGTTTTGCAA--------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ------------CGTAG-----------TGCTTATTAGATTTCCACACATTGTAAATTATAATT--TAATTGACC--GCCAGTAAGT-GGAGATCGTTT-GATTAA-----TTCCTA---
simulans ------------CGAAG-----------TGCTTATTAGATTTCCACACATTGTAAATTATAATT--TAATTGACC--GCCAGTAAGT-GGAGATCGTTT-GATTAA-----TTCCTA---
sechellia ------------CGAAG-----------TGCTTATTAGATTTCCACACATTGTAAATTATAATT--TAATTGACC--GCCAGTAAGT-GGAGATCGTTT-GATTAA-----TTCCTA---
yakuba ------------CGAAG-----------TGCTTATTAGATTTCCACACATTGTAAATTATAATT--TAATTGAGCGGGGCAGTAAGT-GGGGATCGCTT-GATTAA-----TTCCTA---
erecta ------------CGAAG-----------TGCCTATTAGATTTCCACACACTGTAAATTATAATT--TAATTGAGC--GGCAGTAAGT-GGAGATCGGTT-GATTAA-----TTCCTG---
ananassae --------CTGGCAAAG-----------TGCTTATTAGATTTCCACACATTGTTAATTATAATTGGTAAGTGGTA--AGTGGTAAGTGGGAGATCACTTCGATTAAGAGAGTCTATAT-A
pseudoobscura GAGAGTGACTGTCAAAG-----------TGCTTATTAGATTTCCACACATTGTAAATTATAATT--AAATTGACT--CGAAGCGG---GATGATGCTTT-GATTAA-----TTCCCATCG
persimilis GAGAGTGACTGTCAAAG-----------TGCTTATTAGATTTCCACACATTGTAAATTATAATT--AAATTGACT--CGAAGCGG---GATGATGCTTT-GATTAA-----TTCCCATCG
virilis ---------ATCCCGGC-----------TGCTTAGTA----TCGACACATTGTAAATTATAATT--TAATTGCTC--GATTGC-----TTAGATGATTT-GATTAA-----TCTCGC---
mojavensis ------------CCGGCGATTTGAATTTTGTTTAGCT----TCGACACATTGTAAATTATAATT--TAATTGCCC--GATTGC-----TTAGATAATTT-GATTAA-----TCTCGC---
grimshawi -----------------------------------------TTAACACATTGTAAATTATAATT--TAATTGCTG--GATTGC-----TTAGATAATTT-GTTTAA-----TCTCGC---
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -GCCGCGGA------------------------GTGG--GGCCATCAACGCCTCGCTTATGGG----------------CTGCC-AT---CGATTGCATCGACACCAAATTAAAAAACCA
simulans -GCCGCGGA------------------------GTGG--GGCCATCAACGCCTCGCTTATGGG----------------CTGCC-AT---CGATTGCATCGACACCAAATTAAAAAACCA
sechellia -GCCGCGGA------------------------GTGG--GGCCATCAACGCCTCGCTTATGGG----------------CTGCC-AT---CGATTGCATCGACACCAAATTAAAAAACCA
yakuba -GCCGCGGA------------------------GTGG--GGCCATCAACGCCTCGCTTATGGG----------------CTGCC-AT---CGATTGCATCGACACCAAATTAAAAAACCA
erecta -GCCGCGGA------------------------GTGG--GGCCATCAACGCCTCGCTTATGGG----------------CTGCC-AT---CGATTGCATCGACACCGAATTAAAAAACCA
ananassae TACTATAGAG------------TGTAAT-CTCTGTGG--AGCTATCAACGCCGCGGTTATGGG----------------CTGCCAAT---CGATTGCATCGACACCAAATTAAAAAACCA
pseudoobscura AGCGGCAGAGGCACTCGCACTCTGCGATAATCTGACT--GGCTATCAACGCCTCGTTTATGGG----------------ATGCC-AT---CGATTGCATCCACACCAAATTAAAAAGCCA
persimilis AGCGGCAGAGGCACTC-CACTCTGCGATAATCTGACT--GGCTATCAACGCCTCGTTTATGGG----------------ATGCC-AT---CGATTGCATCCACACCAAATTAAAAAGCCA
virilis -AGCCGCTA------------------------ATCGCTGGCTATCAACGCCTTGTTGTTAGT-----------GGCTGTTTCT-ATAC--GATTTCATCGACACCAAATTAAAAAACCA
mojavensis -GCTACGTA------------------------ATCGCCGGCTATCAACGCCTTGTTGTTAGT-----------GGATCTTGTT-GGGC-TGTTTCCATCGACACCAAATTAAAAAACCA
grimshawi -TGCGAGTA------------------------ATCGTCGGCTATCAACGCCTTGTTGTTAGTTGTAGTCTATCGACTCTTTCT-ATATACGATTCCATCGACACCAAATTAAAAACCCA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTGCCGACCATAAAAAAGCACTTAACTCGTCAATTAACAC-ACGAT----CTA------------AGAAG-AGCTGCAAG--GAAA-ATCTCCGC----TTGT-CAATGGAAAA------
simulans TTGCCGACCATAAAAAAGCACTTAACTCGTCAATTAACAC-ACGAT----CTA------------AGAAG-AGCTGCAAG--GAAA-ATCTCCGC----TTGT-CAATGGAAAA------
sechellia TTGCCGGCCATAAAAAAGCACTTAACTCGTCAATTAACAC-ACGAT----CTA------------AGAAG-AGCTGCAAG--GAAA-ATCTCCGC----TTGT-CAATGGAAAA------
yakuba TTGCCAGCCATAAAAAAGCACTTAACTCGTCAATTAACAC-ACGAT----CTA------------AGAAG-CGCTGCAAG--GAAA-ATCTCCGC----TTGT-CAATGGAAAA------
erecta TTGCCAGCCATAAAAAAGCACTTAACTCGTCAATTAACAC-TCGCT----CTA------------AGAAG-AGCTGCCAG--GGAA-ATCTCCGC----TTGT-CAATGG-AAA------
ananassae TTGCCAGCCATAAAAAAACACTTAACTCGTCAATTAACACAACCGT----CTA------------AGAGG--------AG--AAAA-CTCTTCCC----TCTT-TCTT------------
pseudoobscura TTTCCACTCATAAAAAAGCACTTAACTTGTCAATTAACAC-AGACT----CTA------------AGAAGAAACCAAAAG--AAAA-A-------------AA-AAATGGAAAATCGGAA
persimilis TTTCCACTCATAAAAAAGCACTTAACTTGTCAATTAACAC-AGACT----CTA------------AGAAGAAACCAAAAGAAAAAA-A-------------AA-AAATGGAAAATCGGGA
virilis TTTCGAGTCATAAAAAAGCACTTAACTTGTCAATTAACGC-ATCGGAGCAATA------------ACACC-AACACACAC--ACAC-ACGCACACACAGATAC-TGCTTGGAAA------
mojavensis TTTCGAGTCATAAAAAAGCACTTAACTTGTCAATTAACGC-ATCGCAGCAATA------------ACACC-AACACACAC--ACAC-ACACACAC----ATGC-TGCTTGGAAA------
grimshawi TTTCGAGTCATAAAAAAGCACTTAACTTGTCAATTAACGC-ATCGCAGTAATAACACACTCTCACACACC-AACACACAC--ACACAACACACAC----ATGCGTAAAGAGAAA------
Summary BBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --------------------------------------------------------C-------TCTTCTCCTTTCGAAGGGGCTT-CCCCCGCCATCAT------------------AT
simulans -------------------------------------------------------AC-------TCTTCTCCTTTCGAAGGGGCTT--CCCCGCCATCAC------------------AT
sechellia -------------------------------------------------------TC-------TCTTCTCCTTTCGAAGGGGCTT-CCCCCGCCATCAC------------------AT
yakuba -------------------------------------------------------AC-------TCTTCTCCTTTC---GGTGCTT-CCCCCGCC-------------------------
erecta -------------------------------------------------------AC-------GCTTCTCCTTTC---GGGGCTT-CCCCCGCC-------------------------
ananassae ----------------------------------------------------------------TCTTTTTTTTTC--AGATTCTT-CCCCCCAC-------------------------
pseudoobscura AAAGCGGAGATGGAGGGAGAGGGAGAGTAGAGTTTTCCTGCG-------------TC-------TCTCCCTCTTTTGTGTGTGTGTGCCCCCGTA-------------------------
persimilis AAAGCGGAGACG------GAGGGAGAGTAGAGTTTTCCTGCG-------------TC-------TCTCCCTCTTTTGTGTGTGTGTGCCCCCGTA-------------------------
virilis --------------------------AATGATTTTTCCTTTG--GCAGCTTCTAGTCTTGTGTGTCTGCTCTTTA-------------------------------------------CG
mojavensis --------------------------ATAGATTTTCC------------------TGTTGCGC-TCTGCTCTTTA---------------------------------------------
grimshawi --------------------------AATGATTTTTCCTTTTCCTCGACGGCT--TCTAGTCT-TCTGCTTTTCT-------------------------GTTTCTCTGATTTTAATGGG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CTCCCCCGCACCTA--CTTTTCCCC--TGTCAATCGTCAGCGCGTTTTAGGGTCTCGGCTTCTGCGTGGC--GTGTGTGCGTGAGCG--------------GTGACCTTCGACC--TGAG
simulans CTCCCCCGCACCCG--CTTTTCCCC--TGTCAATCGTCAGCGCGTTTTAGGGTCGCTGCTTCTGCGTGGC--GTGTGTGCGTGAGCG--------------GTGACCTTCGACC--CGAG
sechellia CTCTCCCGCACCCG--ATTTTCCCC--TGTCAATCGTCAGCGCATTTTAGGGTCGCTGCTTCTGCGTGGC--GTGTGTGCGTGAGCG--------------GTGACCTTCGACC--CGAG
yakuba ----CCCGCCCCCG--CTATTCCCCCCTGTCAATCGTCAGCTCGTTTTAGGGTCGCTGCTTCTGCGTGGC--GTGTGTGCGTGACCGGGAACCGGTGACTTCTGACCTTCGACC--CGAG
erecta ----CCCGCACCCG--CCTATCCCC---ATCACTCGTCAGCGCGTTTTAGGGTCGCTGCTTCTGCGTGGCGTGTGTGTGCGTGTGTGCGTGTGCGTGCCCGGTGACCTTCGACC--CGAG
ananassae ----------------------TCT--CGTCAATCGTCAGCGGGTTTTAGG------GCTTCTGCTTGGC--GTGTGTGCGTGACTT-------GTGACCTTCGACCTTCGATC--CGAG
pseudoobscura ----CCCGTACCCGTCACCGTCCCC---GTCAATCGTCAGCACATTTTAGGTTCCCTGCGGCCCTGTGGC--GTGTGTGCCTGACTC--------------CTGACCTTCGAACTACGAT
persimilis ----CCCGTCACCGTACCCGTCCCC---GTCAATCGTCAGCACATTTTAGGTTCCCTGCGGCCCTGTGGC--GTGTGTGCGTGACTC--------------CTGACCTTCGAGCTACGAT
virilis CACGCTCGCAC-----------------GTCAATCGTCAGCGCGTTTTAGTG-----GCA------------------GCGAGAATC--------------GTGACCTGTGACCTTCGAC
mojavensis ----------------------------GTCAATCGTCAGCGCGTTTTAGTG-----GCAATCGAATATGAAGTCGATGCGTGAATC--------------GTGACCTCTGACCTTCGAC
grimshawi CACTCTCGCAA-----------------GTCAATCGTCAGCGCATTTGAGTGTC-TTGCACCAAAATCAGAAAT----TCGTGACCT--------------GTGACCTGTGACCTTCGAA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GATC-TAACAGTT--------------------------------------CCGATAGACAAGCG-----------CTGGCTCTGCGCTACATGTTGTCACATAAAGTGTCG-CTCTTC-
simulans GATC-TAACAGTT--------------------------------------CCGATAGACAAGCG-----------CTGCCTATGCGCTACATGTTGTCACATAAAGTGTCG-CTCTTC-
sechellia GATG-TAACAGTT--------------------------------------CCGATAGACAAGCG-----------CTGCCTATGCGCTACATGTTGTCACATAAAGTGTCG-CTCTTC-
yakuba GATC-TAACAGCT--------------------------------------CTGATAGTCAAGCG-----------CTGCCTCTGCGCTACATGTTGTCACATAAAGTGTCG-CTCTTC-
erecta GATC-TAACAGTT--------------------------------------CCGATAGCCAAGCG-----------CTGCCGCTGCACTACATGTTGTCACATAAAGTGTCG-CTCTTC-
ananassae GATCAGAGCAGTTGGAACTCCCACTCC----------------CCTTGTCGGCGATAAGAAAACG-----------CTGCCTGTGCGCTACATGTTGTCACATAAAGTGTCG-CTCTTC-
pseudoobscura CTTC-TGGTAGTG--TACTCCCACTCCCACTCCTATTCCGCTTCCTTGTCGGCGATAAGCAAACG-----------CTGCC--TGCGCCCCATGTTGTCACATAAAGTGTCGCCTCTTC-
persimilis CTTC-TGGTAGTG--TACTCCCACTCCCACTCCTATTCCGCTTCCTTGTCGGCGATAAGCAAACG-----------CTGCC--TGCGCCCCATGTTGTCACATAAAGTGTCGCCTCTTC-
virilis TTCT-TGTCTGCG--------------------------------------GCGATAGGCAAACGAGCCGCAGCGTCCGCC--TGCGCTGCATGTTGTCACATAAAGTGTCA--GCTTC-
mojavensis TGGC-TGT---CG--------------------------------------GCGATAGCCAAACGAG---------TCGCC--TGCGCTACATGTTGTCACATAAAGTGTCA--GCTTCA
grimshawi C------------------------------------------------------------------------------------CGATACATGTTGTCACATAAAGTGTCA--GCAAC-
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBB
melanogaster AAAAGCAGCGCAG-----CA------------CTGCGTGAGGCC------CAAAATCGGA------------TTCGGATTCGGATACGAAATGGG------------AATGGGAATGGGC
simulans AAAAGCAGCGCAG-----CA------------CTGCGTGAGGCC------CAAAATCGGA------------TTCGGATTCGGATACGAAATGGG------------AATGGGAATGGGC
sechellia AAAAGCAGCGCTG-----CA------------CTGCGTGAGGCC------CAAAATCGGA------------TTCGGATTCGGATACGAAATGGG------------AATGGGAATGGGC
yakuba AAAAGGAGCGCAG-----CA------------CTGCGTGAGGCC------CAAAATCGTT------------TTCGGATTCGGATACGAAATGGGTATGGGAATGGGAATGGGAATAGGC
erecta AAAAGGAGCGCAG-----CG------------CTGCGTGCGGCC------CAAAG------------------TCGGATTCGGATTCGGAATGGG-------------------------
ananassae AAAAGGAGCGCAGCTCCTCA------------CTGCGTGAGGCC------CGGAATCGAA-------------TCGGA-TCGGATCGG--ATGGC--------------TGGGAATA---
pseudoobscura AAACGGAGCGCTG-----CA------------CTGCGTGCGGCC------CTGAATCGGA------------A------TCGGATTCGGATTCAG------------AGTCCAAGTCCAA
persimilis AAACGGAGCGCTG-----CA------------CTGCGTGCGGCC------CTGAATCGGA------------ATCGGATTCGGATTCGGATTCAG------------AGTCCAAGTCCAA
virilis AAAGGCACA--AG-----CA------------CTGCGTGCGGCC----------------------------------------------------------------------------
mojavensis AAAGGCAGC--AG-----CAGCAGCAGCCGCGCTGCGTGCGGCCCGACCCGGAAGGCTCAATAGGGCCAAAG-----------ACCCAAAGGCCG------------AC---------AA
grimshawi AGCAACAGC--AG-----CAGCAGCAGCAGCACTGCGTGCGGC-------CAAAAGCGGA-----------------------ATACAGAAGAAG------------AAAGCAAAAAGAA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ATGGTTATAGAAAT--------------------GGGAGTC-------------------AGATTCGGGCTCATTGCCATTGTCCGCGTGTCGCC-TAATTGTGGCAGTGTCCTTCGG--
simulans ATGGTTATAGAAAT--------------------GGGAGTC-------------------AGATTCGGGCTCATTGCCATTGTCCGCGTGTCGCC-TAATTGTGGCAGTGTCCTTCGG--
sechellia ATGGTTATAGAAAT--------------------GGGAGTC-------------------AGATTCGGGCTCATTGCCATTGTCCGCGTGTCGCC-TAATTGTGGCAGTGTCCTTCGG--
yakuba ATGGTTATTGAAAT--------------------GGGAGTC-------------------AGATTCGGGCTCATTGCCATTGTCCGCGTGTCGCC-TAATTGTGGCAGTGTCCTTCGG--
erecta ATGGTTATTGAAAT--------------------GGGAGTC-------------------AGACTCGGGCTCATTGCCATTGTCCGCGTGTCGCC-TAATTGTGGCAGTGTCCTTCGG--
ananassae -----TATTAGAAC--------------------AGTAGACTCCGACTCTGACCCCGAATGGAGTCAGTTTCATTGCCATTGTCCGCGTGTCTCC-TAATTGTTGCAGTGTCCTTCGG--
pseudoobscura GTCGATGTTGAAAT--------------------TGAAGTC-------------------------------ATTGTCATTGTCCGCGTGTCTCC-TAATTGTTGCAGTGTCCTTCGA--
persimilis GTCGATGTTGAAAT--------------------TGAAGTC-------------------------------ATTGTCATTGTCCGCGTGTCTCC-TAATTGTTGCAGTGTCCTTCGA--
virilis ----------------------------------AAAGTCG-------------------ACAACTGA--------CAATTGAGCCCCGGACATT-TAATTGTCCCAGTGTCCTTCGG--
mojavensis TCGCCGATCGAGAATTGACAATTGAGAATCGACAAGAATTG-------------------AGAAATGA--------GAATCGAGCCCCGAACACC-TAATTGTTGCAGTGTCCTTCGGT-
grimshawi TACTCTGCCGACAATTGACAATTG----------ACAATTT-------------------AGAATTGAGC--CTTTGGATTGGGTCTCGGACACCGTAATTGTTGCACTGTCCTTCGGCA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBM
melanogaster ATTTATGACACAAAACAGAGC------TG----------CTTGAAAGG-CTGCCGCC-AACATAACGCTCCCCAAGGGTGGTCCCCATGTAACCATATACCATTTACCATTT--------
simulans ATTTATGACACAAAACAGAGC------TG----------CATGAAAGG-CTGCCGCC-AACATAACGCTCCCCAAGGGTGGTCCCCATGTAACCATATACCATTTACCATTT--------
sechellia ATTTATGACACAAAACAGAGC------TG----------CTTGAAAGA-CTGCCGCC-AACATAACGCTCCCCAAGGGTGGTCCCCATGTAACCATATACCATTTACCATTT--------
yakuba ATTTATGACACAAAACAGAGC------TG----------CTTGAAAGG-CTGCCGCC-ACCATAACGCTCCCCAAGGGTGGTCCCCATGTAACCATATACCATATACCATTT-TTGTGTA
erecta CTTTGTGACACAAAACAGAGC------TG----------CTTGAAAGG-CTGCCGCC-ACCATAACGCTCCCCAAGGGTGGTCCCCATGTAACCATATACCATATACCATGTACCATGTA
ananassae ATTTATGACACAAAACAGAGC------CA----------TTTCAAAGGCCTGCCGCC-GCTATTACGCTCCCCCAGGGTGGTCTT----------GAAACTTTCTTCCACTT--------
pseudoobscura ATTTATGACCCAAAACAATGC------TG----------GATAAAAGA-CTGC------------CGCTCCTTGGGGGTGGTCTCCGCGTAACGTGATCCCGTTCTTATGTG--------
persimilis ATTTATGACCCAAAACAATGC------TG----------GATAAAAGA-CTGC------------CGCTCCTT-GGGGTGGTCTCCGCGTAACGTGATCCCGTTCTTATGTG--------
virilis CTTTATGACAGACAACAAGGCAACATCCACAAACACG-GCTTGAAAGG-CTGCCGCTGCTCACAGCGTTG----GGGGTGGTCCC-----------------------------------
mojavensis TTTTATGACAGTCAACAAGACA-----CA-AAACACGTTCATGAAAGG-CTGCCGCTGCTCACAGCGTTG----GAGGTGGTCC------------------------------------
grimshawi TTTTATGACACACAACAAACCGA----TG-AGGCAAGCATATGAAAGG-CTGCCGCT------AGCATTG----GGGGTGGTCCCCAAACAACAA-ATATCATTGGCGAGTC--------
Summary MMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ------------TCACATC---------TTTTTTTTTTTAACGAACC-TTTGGGACTTCCTTGTTTTGACAACACTGAAGATGGTGCCCGACGAACCCTCTTT-----CTGACCCACTTA
simulans ------------TCACATC----------GTTTTTTTTTACCGAACCTTTTGGGACTTCCTTGTTTTGACAACGCTGAAGATGGTGCCCGACGAAGCCTCATT-----CTGACCCACTTA
sechellia ------------TCACATC----------GTTTTTTTATACCGAACC-TTTGGGACTTCCTTGTATTGACAACGCTGAAGATGGTGCCCGACGAAGCCTCATT-----CTGACCCACTTA
yakuba ----GTACTATATCACATT-----------GTTTTTTATGCCGAACC-TTTGGGAGTTCCTTGTTTTGACCA-------------GCCCTACAAACCCGCCTT-----GTGACCCACTTA
erecta CCATATACCATTTTTCATTTTCCATTTGCCATTTTTTATGCCGAACC-TTTGGCAGTTCCTTGTTTC------------------------------------------TGACCCACTGA
ananassae ------------TTTCCTT-----------------------AAATA----------------------------------------------------------------------TTA
pseudoobscura ------------TCGCATA-----------------------GAATC---TAGTATTCCTTTGTG--------------------GACTGCGGAACCATCTTTAGGCAGTTCCCCCTCTT
persimilis ------------TCGCATA-----------------------GAATC---TAGTATTCCTTTGTG--------------------GACTGCGGAACCATCTTTAGGCAGTTCCCCCTCTT
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------TTGT--------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AACGCTAGGTAATCGCATAG-----ATACTAACCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTACACCCAGGCGGGCCACATCTCGTTCTTGCCGCCCTCTGTGGTGGTGGATCCCG
simulans AACGCTAGGTAATCGCATAG-----ATACTAACCTGAGCTGGGACGATCGCTGTATCGGGTGCAGTACACCCAGGCGGGCCACATTTCGTTCTTGCCGCCCTCTGTGGTGGTGGATCCCG
sechellia CACGCTAGGTAATGGCATAG-----ATACTAACCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTACACCCAGGCGGGCCACATTTCATTCTTGCCGCCCTCTGTGGTGGTGGATCCCG
yakuba AACCCTAGGTAATCTCAAAG-----ATACTAACCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTACACCCAGGCGGGCCACATCTCATTCTTGCCGCCCTCTGTGGTGGTGGATCCCG
erecta AACCCT-GGTAATCTCAAAG-----ATACTAACCTGAGCTGGGACGGTCGCTGTAGCGGGTGCAGTACACCCAGGCGGGCCACATCTCGTTCTTGCCGCCCTCGGTGGTGGTGGATCCCG
ananassae AAAAAAAGATGA--AAATAA-----ATACTAACCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTAGACCCAGGCGGGCCACATCTCGTTCTTGCCACCTTCGGTGGTTGTGGATCCCG
pseudoobscura CACACTTTATAG--ATATAG-----CTACTAACCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTAGACCCAGGCGGGCCACATCTCGTTCTTGCCGCCTTCGGTGGTCGTGGAGCCCG
persimilis CACACTTTATTG--ATATAT-----CTACTAACCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTAGACCCAGGCGGGCCACATCTCGTTCTTGCCGCCTTCGGTGGTCGTGGAGCCCG
virilis -------------------------ATACACACCTGAGCTGGGACGGTCGCTGTACCGGGTGCAGTACACCCACGCGGGCCACATCTCGTTCTTGCCGCCGTCGGTGGTGGTGGAGCCTG
mojavensis ---------TAACCATATAGAAAGAATACACACCTGAGCTGGGACGATCGCTGTAGCGCGTGCAGTAGACCCACGCGGGCCACATCTCATTTTTGCCGCCGTCGGTGGTGGTGGAGCCCG
grimshawi -----------------------ATATACACACCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTAGACCCACGCTGGCCACATCTCGTTCTTGCCGCCGTCGGTGGTTGTGGAGCCCG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TCTCGGAACGCGTGTCATCCGAGGACTCCATTCCGGAATCTCGGCTAACGGCGGATGGCGGCGGGATTGGCTGCGGCTGGGGACTGCTGGCA------------TTGACTCCGGATCCAC
simulans TCTCGGAACGCGTGTCATCCGAGGACTCCATGCCGGAATCTCGGCTAACGGCGGATGGCGGCGGGATTGGCTGCGGCTGGGGACTGCTGGCA------------TTGACTCCGGATCCAC
sechellia TCTCGGAACGCGTGTCATCCGAGGACTCCATGCCGGAATCTCGGCTAACGGCGGATGGCGGCGGGATTGGCTGCGGCTGGGGACTGCTGGCA------------TTGACTCCGGATCCAC
yakuba TCTCGGAACGCGTGTCATCCGAGGACTCCATGCCGGAATCCCGGCTAACGGCGGATGGCGGAGGAATTGGCTGCGGCTGGGGACTGCTGGCA------------TTGACTCCGGATCCAC
erecta TCTCGGAACGCGTATCATCGGAGGACTCCATGCCGGAGTCCCGGCTAACGGCGGATGGCGGAGGAATGGGCTGCGGCTGGGGACTGCTGGCA------------CTGACGCCGGAGCCAC
ananassae TCTCCGAGCGTGTATCATCCGAGGACTCCATACCAGAGTCCCGACTAACGGCGGAGGGCGGTGGAATCGGCTGGGGCTGTGGACTGCTGGCA------------TTGGCCACAGCGGAGG
pseudoobscura TCTCGGAGCGGGTGTCGTCCGAGGACTCCATGCCAGAGTCGCGGCTCACGGCAGAGGGTGGTGGAATCGGCTGGGGCTGGGGACTGCTGGCG------------TTGGCCGCTG---CAC
persimilis TCTCGGAGCGGGTGTCGTCCGAGGACTCCATGCCAGAGTCGCGGCTCACGGCAGAGGGTGGTGGAATCGGCTGGGGCTGGGGACTGCTGGCG------------TTGGCCGCTG---CAC
virilis TCTCGGAGCGGGTGTCGTCCGAGGACTCCATGCCGGAGTCGCGGCTGACAGCGGAGGGTGGCGGTATGGGCTGC------GGGCTGCTGGCATTG---------TTGGCTCCG-------
mojavensis TCTCGGAGCGCGTGTCGTCCGAGGACTCCATGCCGGAGTCACGGCTAACGGCCGATGGAGGGGGTATGGGCTGC------GGGCTGCTGGCATTGTTGGCATTATTGGCTCCG-------
grimshawi TCTCGGAGCGGGTGTCATCCGAGGATTCCATGCCCGAGTCTCGACTAACCGCCGAGGGTGGTGGAATGGGCTGG------GGACTGTTAGCGGCA---------TTGGCGCCACCTCCAT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TGGCT------------------CCCAGTCGGCTACTGGGCGAGGAGTTCAAGGAACTGGCCGCCGAGGAGCA---------------ACCCGACGA---GGAGGAGCTCGAGCTGGTGG
simulans TGGCT------------------CCCAGTCGGCTACTGGGCGAGGAGTTCAAAGAGCTGGCCGCCGAGGAGCA---------------ACCCGACGA---GGAGGAGCTCGAGCTGGTGG
sechellia TGGCT------------------CCCAGTCGGCTACTGGGCGAGGAGTTCAAGGAGCTGGTCGCCGAGGAGCA---------------ACCCGACGA---GGAGGAGCTCGAGCTGGTGG
yakuba TGGCT------------------CCCAGGCGGCTGCTGGGCGATGAGTTCAAGGAGCTAGCCGCCGAGGAGCA---------------ACCCGACGA---GGAGGAGCTCGAGCTGGTGG
erecta TGGCT------------------CCCAGGCGGCTGCTGGGCGAGGAGTTCAAGGAGCTGGCCGCCGAGGAGCA---------------ACCCGACGA---GGCGGAGCTCGAGCTGGTGG
ananassae TGGCTCCCATTCCCACTCCCACACCCAGGCGACTGCTGGGCGAGGAGTTGAGCGAACTGGAGGCCGAGGAGCA---------------GCCGGAGGA---TGAGGAACTTGAACTGGTAG
pseudoobscura TGCCT------------------CCCAGGCGACTGCTGGGCGAGGAGTTCAGCGAACTGGGGGCCGAGGAGCA---------------GCCCGAGGAGCTGGAGGATGAGGAGCTGGTGG
persimilis TGCCT------------------CCCAGGCGACTGCTGGGCGAGGAGTTCAGCGAGCTGGGGGCCGAGGAGCA---------------GCCCGAGGAGCTGGAGGATGAGGAGCTGGTGG
virilis -----------------------GCCAGGCGACTGCTGGGCGACGAGTTCAGCGAGCTTGCCGCCGAGGAGCA---------------GCCGGAGGAGGAGGAGGCGCTGCAGCTGGCTG
mojavensis -----------------------GTCAGGCGGCTGCTGGGCGAGGAGTTGAGCGAGCTGGCGGAGGAGGAGCA---------------GGCGCTGCTGCTGCTGCTGTTGCTGCTGGCCG
grimshawi T---T------------------GCCAAACGACTGCTGGGCGAGGAGTTCAGCGAGCTGGTCGACGAGGAGCAGCCCGATGAGGAGGCGCCACTGCTGCTGCTGCTGCTGCTGCTGGCTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CCACGGAAGA---------GGTGCTGCTAATGGTCGAGGCATTGGAGGCGGGTGGCGGACTGGCCAAGCTGCTGGC------ACTG---C-------------TAC--------TCAGCG
simulans CCACGGAGGA---------GGTGCTGCTGATGGTGGAGGCATTGGAGGCGGGAGGCGGACTGGCCAAGCTGCTGGC------ACTG---C-------------TGC--------TCAGCG
sechellia CCACGGAGGA---------GGTGCTGCTGATGGTGGAGGCATTGGAGGCGGGTGGCGGACTGGCCAAGCTGCTGGC------ACTG---C-------------TGC--------TCAGCG
yakuba CCACGGAGGA---------GGTGCTGCTGATGGTGGAGGCATTGGAGGCGGGTGGCGGACTGGCCAAGCTGCTGGC------ACTG---C-------------TGC--------TTAGCG
erecta CCACGGAGGA---------GGTGCTGCTGATGGTGGAGGCATTGGAGGCGGGCGGCGGACTGGCCAGGCTGCTGGC------ACTG---C-------------TGC--------TCAGCG
ananassae CTGTGGAGGAA------CTGGAACTGCTGATGGTGGAGGCGTTGGAGGCGGGCGGCGGGCTGGCCAGGCTGCTGGC------ACTG-------------------C--------TCAACG
pseudoobscura CCGTCGAGGT---------GGA---GCTGATGGTGGAGGCATTCGAGGCGGGCGGTGGACTGGCCAGGTTGTTGGCCAGGCTGCTGGAGC-------------TGC--------TCAGCT
persimilis CCGTCGAGGT---------GGA---GCTGATAGTGGAGGCATTCGAGGCGGGCGGTGGACTGGCCAGGTTGTTGGCCAGGCTGCTGGAGC-------------TGC--------TCAGCT
virilis CTGTGGAGGA---------ACTGCTGCTGATGGTGGATGCATTCGAGGCGGGCGGAGGACTGGCCAGCTGGCTGGC------GCTG---C-------------TGC--------TTGGCG
mojavensis CTGTGGAGGAG------CTGCTGCTGCTGATGGTGGATGCATTGGAGGCGGGTGGCGGACTGGCCAGCTGGCTGGC------GCTG---CTGCTACT-GCTGTTGC--------TCGGCG
grimshawi CTGCGGAGGAGGAACTACTGCTGCTGCTGATGGTGGAGGCATTCGAGGCGGGCGGTGGACTGGCCAAATGACAGGC------GCTG---CTGCTGCTCGAGGATGCGGCACCAACTGGTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GAGGTTG---GGTCATCGTAGGGGCAGCAGGTTGTCCGATCTGCGAGACCGCCTTGCACAGGGATCCCAGAGCAGATTTCTCTGGATTGGCATCGCTCATCTTGGAGCTCATGGGCGGCG
simulans GAGGTTG---GGTCATCGTTGGGGCAGCAGGTTGTCCGATCTGCGAGACCGCCTTGCACAGTGATCCCAGAGCGGATTTCTCGGGATTGGCATCGCTCATCTTGGAGCTCATGGGCGGCG
sechellia GAGGTTG---GGTCATCGTCGGGGCAGCAGGTTGTCCGATCTGCGAGACCGCCTTGCACAGGGATCCCAGAGCGGATTTCTCGGGATTGGCATCGCTCATCTTGGAGCTCATGGGCGGCG
yakuba GCGGTTG---GGTCATCGTGGGGGCAGAAGGTTGTCCGATCTGCGAGACCGCCTTGCACAGGGATCCCAGAGCGGATTTCTCGGGATTGGCATCGCTCATCTTGGAGCTCATGGGCGGCG
erecta GCGGTTG---GGTCATGGTGGGGGCAGAAGGTTGTCCGATCTGCGAGACCGCCTTGCACAGGGATCCCAGAGCGGATTTCTCGGGATTGGCATCGCTCATCTTGGAGCTCATGGGCGGCG
ananassae GTGGCTG---GGTCATCGTGGGAACGGCCGGCTGACCGATCTGGGAGACCGCCTTGCACAGGCTGCCCAGAGCCGACTTCTCCGGGTTGGGCTCGCTCATCTTGG------TCGGCGGCG
pseudoobscura GCGGGGG---CAAGGTCGTGGTCGTTGTGGGCTGGCCGATTTGGGAGACGGTCTTGCAGAGCGAGCCCAGGGCGGACTTTTCAGCGCAGGACTCGCTCATCTTGGAG------GCCGGAG
persimilis GCGGGGG---CAAGGTCGTGGTCGTTGTGGGCTGGCCGATTTGGGAGACGGTCTTGCAGAGCGAGCCCAGGGCGGACTTTTCAGCGCAGGACTCGCTCATCTTGGAG------GCCGGAG
virilis TCGTCAC---GGGCGTCGTCGACTGCGC---TTGGCCAATTTGCGAGACCGTCTTGCACAACGAGCCCAGGGCCGACTTCTCCACGCTGGGCTCCGTCAGCTT------CGCCGTCGGCG
mojavensis TTGTTGCCGGGGGCAGCGTCGACTGTGC---TTGGCCAATCTGGGAGACGGTCTTGCACAGTGATCCCAGAGCGGACTTCTCCATGCTGGACTCCGTCAGCTT------AGCCGTCGGCG
grimshawi TCGTCAT---CGCCGTCGTCGTCGTTGA---CTGGCCGATCTGGGAGACCGTCTTGCACAACGAGCCCAACGCGGACTTCTCCATGCCACCCGACTCCAGCTT------GGCCGTCGGCG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GGATGACGGCATT------------GGCTGCACTCCTGCGCAGCCGACTCTGCACGATTTCCTCGTGTATCCTGGGATAGGCAGCCGGATTGAAGCAGTTAAGGAAGTTGGCCCGTTCCA
simulans GGATTACGGCATT------------GGCTGCACTCCTGCGCAGGCGACTCTGCACGATTTCCTCGTGTATCCTGGGATAAGCAGCCGGATTGAAGCAGTTAAGGAAGTTGGCCCGTTCCA
sechellia GGATGACGGCATT------------GGCTGCACTCCTGCGCAGGCGACTCTGCACGATTTCCTCGTGTATCCTGGGATAAGCAGCCGGATTGAAGCAGTTAAGGAAGTTGGCCCGTTCCA
yakuba GGATGACGGCATT------------GGCAGCACTCCTGCGCAGGCGACTCTGCACGATCTCCTCGTGTATCCTGGGATAGGCAGCCGGATTGAAGCAGTTGAGGAAGTTGGCCCGCTCCA
erecta GGATGACGGCGTT------------GGCTGCACTCCTGCGCAGGCGACTCTGCACGATTTCCTCGTGTATCCGGGGATAGGCAGCCGGATTGAAGCAGTTGAGGAAGTTGGCCCGCTCCA
ananassae GAATCACCGCATT------------GGCGGCACTCCGGCGCAGGCGGCTCTGGACGAGCTCCTCGTGTATCCTGGGATAGGCCACCGGATTGAAGCAGTTGAGGAAGTTGGCCCGCTCAA
pseudoobscura GGATCACCGTGTT------------GGCGGCGCTCCGGCGCAGACGGCTCTGGACAATCTCCTCGTGGATGCGCGGGTAGGCGGCCGGGTTGAAGCAATTGAGGAAGTTAGCCCGCTCGA
persimilis GGATCACCGTGTT------------GGCGGCGCTCCGGCGCAGACGGCTCTGGACAATCTCCTCGTGGATGCGCGGGTAGGCGGCCGGGTTGAAGCAATTGAGGAAGTTAGCCCGCTCGA
virilis GCAGCACAGCATTCGG---ATTGCCAGCGGCGCTGCGCCGCAGCCGACTTTGGACAAGCTCCTCATGGATGCGCGGATACGCGGCCGGGTTAAAGCAGTTCAGCAGATTGGCGCGCTCCA
mojavensis GCAGCACAGCATTCGG---ATTGCCAGCGGCGCTGCGGCGTAGCCGGCTCTGCACGAGCTCCTCGTGGATGCGTGGATAGGCAGCCGGATTGAAGCAGTTGAGCAGATTGGCTCGCTCCA
grimshawi GCAACACTGCATTGGGATTATTGTTGGCGGCACTCCGTCGCAGGCGACTCTGGACGAGCTCCTCGTGGATGCGCGGATAGGCGGCGGGATTGAAGCAGTTGAGCAGATTGGCTCGCTCCA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GCATCATGGCCGCAGTAGCGGCTGCGGCGGCAGCCTGCTGTTGCCG---GCTAAACTCCAGCAGATCCACTCTTGTAAAGGCGGAGGGCGTGGCAGTCTGGGAACGACT---CGCCTCGA
simulans GCATCATGGCCGCAGTAGCGGCTGCGGCGGCAGCCTGCTGTTGCCG---GCTAAACTCGAGCAGATCCACTCTTGTGAAGGCGGAGGGCGTGGCAGTCTGGGAACGATT---CGCCTCGA
sechellia GCATCATGGCCGCAGTAGCGGCTGCGGCAGCAGCCTGCTGTTGCCG---GCTGAACTCCAGCAGATCCACTCTTGTGAAGGCGGAGGGCGTGGCAGTCTGGGAGCGATT---CGCCTCGA
yakuba GCATCATGGCCGCGGTGGCGGCTGCGGCGGCGGCCTGCTGCTGCCG---GCTGAACTCCAGCAGATCCACTCTCGTGAAGGCGGAGGGCGTGGCTGTCTGGGAGCGATT---CGCCTCGA
erecta GCATCATGGCCGCAGTGGCGGCTGCGGCGGCCGCCTGCTGTTGCCG---GCTGAACTCCAGCAGATCCACTCTCGTGAAGGCGGAGGGCGTGGCTGTCTGGGAGCGATT---CGCCTCGA
ananassae TCATCATGGCCGCAGTGGCGGCTGCGGCGGCGGCCTGCTGCTGGCG---ACTAAACTCCAGGAGATCCACCCGCGTAAAGGCGGAGGGTGTGGCCGCCTGGGAGCGGTTGGCCGCCTCGA
pseudoobscura TCATCATGGCGGCGGTGGCTGCGGCAGCCGCCGCCTGCTGCTGCCT---ACTGAACTCCAGAAGATCCACCCGCGTGAAGGCGGAGGGCGTGGCAGCGGCTGCTCGGCT---GGCCTCGA
persimilis TCATCATGGCGGCGGTGGCTGCGGCAGCCGCCGCCTGCTGCTGCCT---ACTGAACTCCAGAAGATCCACCCGCGTGAAGGCGGAGGGCGTGGCAGCGGCTGCTCGGCT---GGCCTCGA
virilis GCATCATCGCAGCGGTGGCAGCTGCGGCAGCTGCCTGCTGCTGCCG---GCTAAACTCCAGCAGATCGACGCGAGTGAACGCGGAGGGCGTGGCTGCAGCAGCGCGACT---CGCCTCGA
mojavensis GCATCATTGCAGCGGTGGCTGCGGCGGCCGCCGCCTGCTGCTGCCG---GCTAAACTCTAGCAGATCCACACGCGTAAAGGCGGAGGGCGTGGCAGCGGCGGCTCGATT---CGCCTCGA
grimshawi GCATCATGGCTGCTGTGGCCGCTGCGGCGGCTGCCTGCTGCTGCTGCCTGCTGAACTCCAGCAGATCCACACGCGTGAAGGCGGAGGGCGTGGCAGCTGCAGCGCGACT---CGCCTCAA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AGGGGCGGAATATGCTG---GCC----------TGGT-----------------------------------------TCTCCATCGA----CTTG-----CCCGGCTTCTGGA------
simulans AGGGGCGGAAGATGCTG---GCC----------TGAT-----------------------------------------TCTCCATGGA----CTTG-----CCCGGCTTCTGGA------
sechellia AGGGGCGGAAGATGCTG---GCC----------TGGT-----------------------------------------TCTCCATGGA----CTTG-----CCCGGCTTCTGGA------
yakuba AGGGGCGGAAGATGCTG---GCC----------TGGT-----------------------------------------TCTCCATTGA----CTTG-----CCCGGCTTCTGGA------
erecta AGGGGCGGAAGATGCTG---GCC----------TGGT-----------------------------------------TCTCCAGCGA----CTTG-----CCCGGCTTCTGGA------
ananassae AGGGCCGGAAGATGCTG---GCC----------TGGT-----------------------------------------TGTCGGGCTG----CTTG-----CCCTGCTTCTGGG------
pseudoobscura AGGGGCGGAAAATGCTG---GCC----------TGGG-----------------------------------------ACTCCAGCGAGGCGTTTGGGGATCCTGGCTTCTTTAGTGTCT
persimilis AGGGGCGGAAAATGCTG---GCC----------TGGG-----------------------------------------ACTCCAGCGAGGCGTTTGGGGATCCTGGCTTCTTTAGTGTCT
virilis ACGGGCGAAAGATGCTG---GCCGCAGCAGCGGCAGC------------------------------GGAGACGGAAACGCCAGTGGA----GTCG-----CCTTGTTTGGTCT------
mojavensis AGGGGCGAAAGATGCTG---GCCGCAGCCGCAGCCGC------------------------------TGAGACGG---CGCTCGATGG----TTCG-----CCCTGCTTGGTCT------
grimshawi AGGGGCGAAAGATGAAGGATGCCGCTGCTGCGGCAGCCGCCGCCGACGAGGAGGAGGATGTGGAGGATGAGGTAGAGGAGGAAGTGGA----TTCG-----CCTTGCTTGCATT------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---------------CATCTCCGAAACGATCGCTCAGGATGTTGGAGATGGAAAAGGCCAGCGAGGGCTTGGC---CGTCGACTGCTGCT
simulans ---------------CATCTCCAAAACGATCGCTCAGGATGTTGGAGATGGAAAAGGCCAGCGATGGTTTGGC---CGTCGACTGCTGCT
sechellia ---------------CATCTCCAAAACGATCGCTCAGGATGTTGGAGATGGAAAAGGCCAGCGATGGTTTGGC---CGTCGACTGCTGCT
yakuba ---------------CATCGCCGAAACGATCGCTCAGGATGTTGGAAATGGAAAAGGCCAGCGAGGGCTTGGC---CGTCGACTGCTGCT
erecta ---------------CATCGCCGAAGCGATCGCTCAGGATGTTGGAGATGGAAAAGGCCAGCGAGGGCTTGGC---CGTCGACTGCTGCT
ananassae ---------------CGTCGCCGAAGCGATCCGAGAGGATGTTGGAAATGGAGAAGGCCAGCGAGGGCTTGGC---CGTCGACTGTTGCT
pseudoobscura GCTGCTTGGGTGCTGCGTCTCCGAAGCGGTCGCTGAGGATGTTCGAGATGGAGAAGGCCAGCGAGGGCTTGGC---CGTGGAC---TGCT
persimilis GCTGCTTGGGTGCTGCGTCTCCGAAGCGGTCGCTGAGGATGTTCGAGATGGAGAAGGCCAGCGAGGGCTTGGC---CGTGGAC---TGCT
virilis ---GTTTGGCGG---CATCGCCGAAGCGGTCGCTGAGGATGTTGGAGATGGAGAAGGCCAGCGAGGGCTTCGACTGCTTGGAC---TGCT
mojavensis ---GCTTGGCCG---CATCCCCGAATCGATCGCTGAGTATGTTTGAGATGGAGAAAGCCAGCGATGGTTTCGATTGCTTGGAC---TGCT
grimshawi ---GCTTGGCAG---CATCGCCAAATCGATCGCTGAGTATGTTGGAAATGGAGAAGGCCAGCGATGGCTTCGATTGTTTCGAC---TGCT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
cau