melanogaster ACGG-AACTATCCGTT-CAAGGGTCACCAAA--GGGTTCGTGAGGATC------TGGAACGAACACCCGAACTAGGTCACTGGATCG-TTGG----GCACAAAAAACGCACAATGCCGGC
simulans ACGG-AACTATCCGCT-CAAGGGTCACCAAAAGGGGTTTGCGAGGATC------AGGAATGGACACCCGAACTAGGTCACTGGATCG-TCGG----ACACAAAAAACGCACAATGCCGGC
sechellia ACGG-AACTATCCGCT-CAAGGGTCAGCTAAAGGGGTTTGCGAGGATC------AGGAACGAAAACCCGAACTAGGTCACTGGATCG-ACGG----GCACAAAAAACGCACAATGCTGGC
yakuba ACGG-AACTATTCGCTAAAAGGGTCACCAAA--GGGTTGGCGAGGTTC------GGGATCGAACACCCGAACTAGGTCACTGGATCG-TTGG----GCACAAAAAACGCACAATGCGGGC
erecta ACGGAAACCATCCGCT-GAAGGGTCACCAAA--GGGTTCGCGAGGATG------AGGATCGAACACCCGAACTAGGTCACTGGATCG-TCGG----GCACAAAAAACGCACAATGCCGGC
ananassae --GA-AAAAATA-----CAAGGGTT----AA--GGGTTA--AAGGATCGTTTCTGGGCCAGAACACCCGAACTAGGTCACTAGATCG--CGG----GCACAAAAAACGCACAATGCCGGA
pseudoobscura --GT-GATCGTG-----CAGGGGTT----AA--GGGTTA---------------AG----GGACACCCGAACTAGGTCACTGGATCG-CCGC----CAACAAAAAA-----------GGA
persimilis --GT-GATCGTG-----CAGGGGTT----AA--GGGTTA---------------AG----GGACACCCGAACTAGGTCACTGGATCG-CCGC----CAACAAAAAA-----------GGA
virilis ---------------T------------AAA--GGGT-----------------ATACA-GAACACCCGAACTAGACCAGTCGATCGGTCGGACACACA-AAAAAACGCACAAAGCGGCA
mojavensis ---------------T------------AAA--GGCT-------------------------ACACCCGAACTAGATCGCCCGA------------ACA-AAAAAGTGAACAAAGCGCGA
grimshawi ---------------T-AA-------TAAAA--GGGTTT-TACGGATC------GTGCT-GAACACCCGAACTAGACCACTCTGTCGATC------ACACAAAAAACACACAATGCGGCA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBB
melanogaster CAA-TAAAAAAGTAGAGC-GCATCGCAGGACATCATTGTCCTG----ACCGA-AACCCTTTCTCG-GG----------TTTTACGATAC----AGAGC-----------------TGCTT
simulans TAA-TAAAAAAGTAGAGC-GCATCGCAGGACATCATTGTCCTG----GCGGA-AACCCTTTCTCG-GG----------TTTTACGATAC----AGAGC-----------------GGCTT
sechellia CAA-TAAAAAAGTAGAGC-GCATCGCAGGACATCATTGTCCTG----GCCGA-AACCCTTTCTCG-GG----------TTTTACGATAC----AGAGC-----------------GGCTT
yakuba CAA-TAAAAAAGTAGAGC-GCATCCCAGGACATCATTGTCCTG----GCGGACAACCCTTTTTCG-GG----------TTTTACAATGT----CGAGC-----------------GGCTT
erecta CAA-TAAAAAAGTAGAGC-GCAGCCCAGGACATCATTGTCCTG----GCGG--AAACCCTTTCCG-AA----------ATTTACGATACAGAGCGAAC-----------------GGCTT
ananassae TCA-TAAAAAAGTAGAGC-GTATCCCACGGTGATATTGTCCTGTTTTTTGGA-AACCCTTTTTCGAAG----------TTTTACGATGT----CCTTC-----------------TTTTT
pseudoobscura CCA-TAAAAAAGTAGAGC-GCATCCCACAGCGA---------G----GAGGG-AACCCTTTCTGG-AAGCCCTCTGCTCTTTACGATCT----AGAGCATGACGGATCTTCTTTAGGTTT
persimilis CCA-TAAAAAAGTAGAGC-GCATCCCACAGCGA---------G----GAGGG-AACCCTTTCTGG-AAGCCCTCTGCTCTTTACGATCT----AGAGCATGACGGATCTTCTTTAGGTTT
virilis TCGTTAAAAAAGGAGAGC-GCTGCGTGCTGGGACATTGT--------GCGCG------TTTTTCT-GAACC-------CTTTCCGACTT----GC--C-----------------AGTTT
mojavensis TCGTTAAAAAAGGAGAGC-GCTACGTGCTGAGACTTTGT--------GCGTG------TTTT-----------------------GTGT----GC-GT-----------------GGCTT
grimshawi TCGTTAAAAAAGGAGAGCGGATACGTGCTGAGATATTGT--------ATGAG------TTTTTGG-GAACC-------CTTTCGGAATT----G---T-----------------ACTTT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---TTTGTGTCCT------------TTTTTTTTTTGG--------AAACTTCTTCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA----------
simulans ---TTTGTGTCC---------------TTTTTTTTGG--------AAACTTCTCCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA----------
sechellia ---TTTGTGTCC--------------TTTTTTTTTGG--------AAACTTCTCCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA----------
yakuba ---TTTGTGTCC-----------------TTTTTTGG--------AAACTTCTGCATAATTGTAGCAAAAAATTAGTGCAC--ATCTTTTGGAATTTACATAGAACGCGA----------
erecta ---TTTGTGTCC-----------------TTTTTTGG--------AAACTTCCTCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA----------
ananassae ---TGGGTGTCT------------------TTTTGAA--------AATCTTCCCGATAATTGTAGCAAAAAATTAGTGCAAGGAAT-TTGGAAATTTACATAGAACTCGA----------
pseudoobscura ATTTTTGTTTTTCTT----T----CTTTTTTTTTTCGTTGGGCATAGTATTCCCGATAATTGTGGCAAAAAATTAGTGCAC--GAC------GATTTACATAGAACTCGACAACTGGCGA
persimilis ATATTTGTTTCTCTT----------CTTTTTTTTCGGTTGGGTATAGTATTCCCGATAATTGTGGCAAAAAATTAGTGCAC--GAC------GATTTACATAGAACTCGACAACTGGCGA
virilis ---TATGTCATTTTC----TTTGATTTTTTTTTTCCC--------CGTTTCGGGAAAAATTGTAGCAAAAAATTGGTGCAG--C--------AATTTACATAGAACT-GA----------
mojavensis ---AAAAACCCTTTCGGAATTTGAGTTTCATCTC-------------------AAGAAATTGTAACAAAAAATTGGTGC--------------ATTTACGTAGAAGT-GA----------
grimshawi ---TATGTCAAC-----------ACTCTTGTTTTTTC--------GGGAACTGGCAAAATTGTAGCAAAAAATTGGTTCAC--TCTTTTTCGAATTTACATAGAAGT-GG----------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
simulans ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
sechellia ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
yakuba ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
erecta ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
ananassae ----------------------------------------------------------------------------------------------------------------------GT
pseudoobscura G-------CTACGACCTACGACCTACGACCTTCGATC------------------------------------------------------------------------CATGGTTTGAC
persimilis GCTACGACCTACGACCTACGACCTACGACCTTCGATC------------------------------------------------------------------------CATGGGTTGAC
virilis ----------------------------CCTTGGCGG----------GAGCAGCGGAATG-------------------GACATGTACGATAATGATAATGCCGCTGA-CAT------AT
mojavensis ----------------------------CCTTGGCCAAGGGCGACTCGAGTAACTGAGTAGC----------------TGGCCTGTA----------------GCTGGCCAT---TTGAC
grimshawi ----------------------------CCTTCGAAA----------GAGCA-CTGAGAGATGATGATGATATTGCCGTGGCCAGCT--AAACTAGCAAGGATACTC--TGT---GTGAC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTGAGTTCGAAGGAGAAGGGGAAAAAAAATGT------AAAA-TGGTGG--------CGGGAAAG---------------------
simulans ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTGAGTTCGACGGAGCAGGGG-AAAAAATTGTATTGTAAAAA-TGGTGG--------CGGGAAAG---------------------
sechellia ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTGAGTTTGACGGAGCAGGAG-AAAAAATTGT------AAAA-TGGTGG--------CGGGAAAG---------------------
yakuba ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTG-------------AGGGG-CAAAAA-TGT---TGGAAAA-TGGTGGCGGA----CGGGAAGG---------------------
erecta ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTGAGTACGGC-CACCAGGGG-AATAGA-TGC------AAAA-TGGTGG--------CGGGAAAG---------------------
ananassae ATGACCTTTAACTTTTGATTTG---GCATATTGACTGGCGGAGGGCGAGAGTTGG-CGGAGT-TGG------AAAA-TGGCGGGAAATGTCAGCGAAAG---------------------
pseudoobscura ATTGCATTTAACTTTTGATTTGACAGCATCTTGACTG-------------AGAGG-GAAAAC-TGA-TGAGGGGAA-GGATGC--------AGGGAAAG---------------------
persimilis ATTGCATTTAACTTTTGATTTGACAGCATCTTGACTG-------------AGAGG-GAAAAC-TGA-TGAGGGGAA-GGATGC--------AGGGAAAG---------------------
virilis ATTTCATTTAACTTTTGATTTG---GCATCTTGACTG---------------TCG-GACTGC-TGT------TGAGCGGATTT--------TTGGGAAAACTG-----------------
mojavensis ATTTCATTTAACTTTTGATTTG---GCATGTTGAC---------------------GACG---TGT------TTAA-GGATTT--------TTGGGAAAATCGCTCTATGTGGACGTATG
grimshawi AACTCATTTAACTTTTGATTTG---GCATCTTGAA---------------------GAGT-----T------TTAA--GGCGT--------TTGGGAAACCAGTCGAATATGG-------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ------------------------------------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
simulans ------------------------------------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
sechellia ------------------------------------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
yakuba ------------------------------------------------G------------CTGGATGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
erecta ------------------------------------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
ananassae ------------------------------------------------GATGGCGTAGCGAC----TGGTT---------AATGGCTTTACAACTTGTTGTCTATAATTATGGTTAAAAT
pseudoobscura ------------------------------------------------GATGTTGC-----C----TGGTT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTTAAAAT
persimilis ------------------------------------------------GATGTTGC-----C----TGGTT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTTAAAAT
virilis ------------------------------------------------G------------C----TACGA---------AATGGCTTTACAACTTGTTGTCACTAATTATGGTCGAAAT
mojavensis TATGTGTGTATGTATATGTGTATGCATGTATGTATGCATGTGGCTGTAG------------C----TATAGCTTTGCCTCGGCAACTTTACAACTTGTTGTCTCTAATTATGGTTGAAAT
grimshawi ------------------------------------------------C------------C----GACCA---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTTGAAAT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBB
melanogaster GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGC-CACGAATTCC-------AGTTC------ATCCGAGTG-----------------
simulans GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGC-CACGAATTCC-------AGTTC------TTCCGAGTG-----------------
sechellia GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGC-CACGAATTCC-------AGTTC------TTCCGAGTG-----------------
yakuba GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGCACAGTTCTTCC-------AGTTC------TTCCGAGTG-----------------
erecta GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGC-CAGTTC--CC-------AGTTC------TTCAGCGTG-----------------
ananassae GGGCCGTAATCCTTT-GCTAAATGCAGC--ACACAG-ACCGCCC------------CCTGCTCGCCCAAAAATTCC--GTCCGAATTC----AGTTCCGAGTGAAATGAAACCAAAAGTC
pseudoobscura GGGCCGTAATCCTTT-GCTAAATGCAGCA-ACACAGCAACGCCC------------CAG-----C-CGAGCATCCCACGAAAGAGCCCGGAGAGATCCGAGAG-----------------
persimilis GGGCCGTAATCCTTT-GCTAAATGCAGCA-ACACAGCAACGCCC------------CAG-----C-CGAGCATCCCACGAAAGAGCCCGGAGAGATCCGAGAG-----------------
virilis GGGCCGTAATCCTTT-GCTAAATGCAGCAAACAGAG-TACGCCC------------CGT-TTCCC-------------------------------------------------------
mojavensis GGGCCGTAATCCTTTAGCTAAACGT-GCA---------ACGCCT------------CGT-TTCGC-------------------------------------------------------
grimshawi GGGCCGTAATCCTTT-GCTAAATGCAGCAAACAGAG-AACGCCCCGAGGCAGCCAGCGA-TTCGC-------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --------------GCC----GAAT-CCAT-TGAGTTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
simulans --------------GCC----GAAT-CCAT-TGAGTTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
sechellia --------------GCC----GAAT-CCAT-TGAGTTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
yakuba --------------TCCGGCTGAAT--CAT-TGAGTTTCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
erecta --------------GCT-GCGGAAT--CAT-TGAGTTTCCGCGAAATCCATGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
ananassae CTGCAGTCAGGATTGCA----GGATATCGTATGGATTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CAGTAAGCC-------------------
pseudoobscura --------------ATG----GAAA------T---TTCACGCGAATTCCGCGTCATGGTTAAACGCGACTAATCCTTCCG------------CAGTAAGCC-------------------
persimilis --------------ATG----GAAA------T---TTCACGCGAATTCCGCGTCATGGTTAAACGCGACTAATCCTTCCG------------CAGTAAGCC-------------------
virilis --------------ACG----AAAT-------------------------CGTCATGGTTAAACGCGGCTAATCCTTGC------CCAGGACCAGTACTCAGGCTCAGGAAACAGTTCCA
mojavensis --------------TAG----AA----------------------------TTCATGGTTAAATGTGACTAATCCTTTTG-----CCACGAACAGCAATCC--------------TTGCA
grimshawi --------------GGG----AAAT-------------------------CGTCATGGTTAAATGCGACTAATCCTTCCGAGCAACCAAGCCAACCAAGCC--------------AACCA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTTCACGGCAGTTCAG-TTCGGTGGGCGTTTTTGTTTAGTTTCGAAATC
simulans --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTTCACGGCAGTTCAG-TTCGGTGGGCGTTTTTGTTTAGTTTCGAAATC
sechellia --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTTCACGTCAGTTCAG-TTCGGTGGGCGTTTTTGTTTAGTTTCGAAATC
yakuba --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTGCACGGCAGTTCAGTTTTGGTGGGCGTTATTGTTTAGTTTCGAAATC
erecta --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTTCACGGCAGTTCAG-TTTGGTGGGCGTTTTTGTTTAGTTTCGAAATC
ananassae --------------CTTCGC-------------------------------TCCGACCTGGACCTGG---------------------TTCGGTGGGCG-TATTGTTTAGTTTCGAAATC
pseudoobscura --------------CTT----------------------------------------TCGGACTCGGGCCAGGACTCGG---------T--GGTGGGCG-TATTGTTTTGTTTCGAAATC
persimilis --------------CTT----------------------------------------TCGGACTCGGGCCAGGACTCGG---------T--GGTGGGCG-TATTGTTTTGTTTCGAAATC
virilis GCCA------AGCCCTTCACTGAACTCCGACTGTCCGACTGTCCGACTGTCGGTGACCTGAACCCG--------------------G-TTCGGTGGGCG-TATTGTTTATTTTCGAAATC
mojavensis GCAG------CATCCTTCGC------------------CCGCCCGCCGGCTGCTGACCTGGACTCGCT----AGC-----------G-CTCTGTGGGCG-TATTGTTTATTTTCGAAATC
grimshawi GCCAGCAATCCCTTCTTCACTGAACT------------TTATGCTCCGGCTGCTGACCTGAACCCGGTTCGGAGC----------AG-TTCGGTGGGCG-TATTGTTTAGTTTCGAAATC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AAAATATTAGCAAA---CAC----------------GCTGAAG-----GCAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGA-------------ACA
simulans AAAATATTGGCAAA---CAC----------------GCTGAA------GGAATACG-------CCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGA-------------ACA
sechellia AAAATATTGGCAAA---CAC----------------GCTGAAG-----GGAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGA-------------ACA
yakuba AAAATATTGGCAAA---CAC----------------GCTGAG------GGAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGAACCCGA------CACA
erecta AAAATATTGGCAAA---CAC----------------GCTGAG------GGAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGAA------------ACA
ananassae AAAATATTAGCAAA---CAC---------------TGACGAAAAGGGCGAAATACG-------G-T------GAAAGGGCAAATG--TGCAAGGATTAAGCCGA-------------GC-
pseudoobscura AAAATATTAGCAAATGTCGG----------------CCTGAA------AGGGCAAG-------GAT------GTGCCGG--ACTG--TGCAAGGATTAAGCCGCGAACGAGAACACGGCA
persimilis AAAATATTAGCAAATGTCGT----------------CCTGAA------AGGGCAAG-------GATGTGCCGGTGCCGG--GCTG--TGCAAGGATTAAGCCGCGAACGAGAACACAGCA
virilis AAAATATTGGCAAA---CAC----------------ACACGG------CGAATACG-------GGT------AAACG---CGGCG--TGCAAGGATTAAGCCGCCGA----------GCA
mojavensis AAAATATTTGCAAA---CACTGCGAATAACCTAGAACCGAGG------CGAGGAAGAAGAAGTGGT------AGGCG--TCGTCGATTGCAAGGATTAAGACG-----------------
grimshawi AAAATATTAGCAAA---CAC-------------------TGG------CGAATACT-------GGA------GAA-----CTGTG--TGCAAGGATTAGCGCG--------------ATA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTTC----TAACC------CGAA----------
simulans CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TTTCC----TAACC------CGAA----------
sechellia CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGTG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTCC----TAACC------CGAA----------
yakuba CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTCC----TAACCCGAATGCGTT----------
erecta CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTCC---------------CGAT----------
ananassae CATCCTTTCG--------CAACCTTGAGCC-------------A-GGCACGCTCGC--AATTTTATGA-CTT--------------TCGCC----CAACC------CGCC----------
pseudoobscura CATCCTTTCG--------CAACCTTGG------CAGCCTTGGGA-CACACGCTCGC--AATTTTACGA-TC---------------------------CC------TGAA----------
persimilis CATCCTTTCG--------CAACCTTGG------CAGCCTTGGGA-CACACGCTCGC--AATTTTACGA-TC---------------------------CC------TGAA----------
virilis CATCCTTTCG--------CAACCTTGGCA----------------AACACGCTCGC-GACTTTTATGA-CGT--------------TTGCTGCCACATGC------CACAAACTAGCTGC
mojavensis CATCCTTTCGCCTTGACACAACCTTGAC------------------ACACGCTCGC-TGATTTTATGG-CATTTCATTGGCAAAAGTTGTTGCCACATGC------CACA----------
grimshawi CATCCTTTCG--------CAACCTTGGAAGC--ACATTTCTGCAGAGCACGCTCGCTTGATTTTATGACCAC--------------TACTTGCCACATGC------CAAA----------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---------TGCGAT---------TTCGATTCCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCTAAGATCCT
simulans ---------TGCGAT---------TTCGATTTCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCTACGATCCT
sechellia ---------TGCGAT---------TTTGATTTCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCAACGATCCTACGATCCT
yakuba ---------TGCGAT---------TGCGATTCCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCT-------T
erecta ---------TCCGAT---------TCCGATTCCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCT-------T
ananassae ---------GCCGAT---------TCTGAATCCGAATCCTCGAATTCCTTCTCTATATTGACTTTGTCTTTGGCGAAAA--CATGGCTCGCGGA--TCCTTGGCCCGTTCACGCGACACA
pseudoobscura ---------TGC--T---------TGCCTCCTTGC--------------------------------CTCTGCCAC-----TCTGCCA---------CTCTGCCACATGCGCGCGTCTCT
persimilis ---------TCC--T---------TGCCTCCTTGC--------------------------------CTC------------CTGGC----------CTCTGCCACATGCGCGCGTCTCT
virilis GACTGCGACTGCGACTGCGCCTGCCTCATTCTTGG--------------------------------TCCTGGCTAATA-ATGTGCAAT-TGTTCA-----GCGAAGAGTTGACTTTCGT
mojavensis ---------TGCCAC-ACAGCTAACTATGTTTTCC--------------------------------TCCTGCCTC---------------------------------CTGCCTCCTGT
grimshawi -----TCATCGCATC-----CTTCTTCGTCCGCAG--------------------------------TCCTGGCTAATA-ATGTGCAATGCGCACG-------------CTGCTTTTGTT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CGATTG--------------------TTTCGTCCTAAGAGTTGACTTTCG--TTTTTTAAC-----------------TCGTCCCGTGCCGAAG--------GACAATC--CTTTGC---
simulans CAATTG--------------------TTTCGCCCTCCGAGTTGACTTTCG--TTTTTTAAC-----------------TCGTCCCG-GCCGAAG--------GACAATC--CTTTGC---
sechellia CAATTG--------------------TTTCGCCCTCCGAGTTGACTTTCG--TTTTTTAAT-----------------TCGTCCCG-GTCGAAG--------GACAATC--CTTTGC---
yakuba CGACT-----------------------------------TTGACTTTCG--TTTTTTAAC-----------------TCGTCCCT-GGCGAAG--------GACAATC--CTTTGC---
erecta CGATTG--------------------TTTCGTCCTCCGAGTTGACTTTCG--TTTTTTAAC-----------------TCGTCCCT-GCCGTAG--------GACAATC--CTTTGCCCA
ananassae CCATTGTCCTGCGATTCGCAGGACCCTTTCAGTCGCAGGATTGACTTTCG--TTTTTTAAC-----------------TCGTCCTT-GCCGTGC--------AACAAGC--CTTTGC---
pseudoobscura CATTTG--------------------T-------------TTGACTTTCG--TTTTTTAA---------------------------GC--------------GTAGCC--CTTCGA---
persimilis CATTTG--------------------T-------------TTGACTTTCG--TTTTTTAA---------------------------GC--------------GTAGCC--CTTCGA---
virilis TTTTTT--------------------CC---------------GCTTTTTACTTTTTTAACC----------CGCGCGTTGTCCTT-GCCCAA---------GCCTTTC--CCCTGC---
mojavensis CTCCTG--------------------CC---------------ACCTTCGTCCTGGCTAATAATGTGCAATGCGCACGCTGCCTTT-GTTGCACTTCTAGTTGACTTTCGTTTTTTC---
grimshawi CAGTTT--------------------TC-----AGCAATGTTGACTTTCAGTTTTTTTAACC-----CGACCCACGGCATGTCCTT-GCCAAGCCTTTTTCCGGCTGCC--TTTGGC---
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---CGATTTGCCCAT--TGTTGCGGTTGTCTCGACTCC--TTT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGCGTCCCCTTTGTGGCGAATTTCG
simulans ---CGATTTGCCCAT--TGTTGCGGTTGTCTCGACTCC---TT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGCGT--CCTTTGTGGCGAATTTCG
sechellia ---CGATTTGGCCAT--TGTTGCGGTTGTCTCGACTCC---TT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGCGT--CCTTTGTGGCGAATTTCG
yakuba ---CGATTTGTCCAT--TGTTGCGGTTGTCTCAACTCC---TT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGTGT--CCTTTGTGGCAAATTTCG
erecta ATGCGATTGGCCCAT--TGTTGCGGTTGTCTCAACTCC--TTT------TTTTGCCAGAGGG---TTACG---GCCC-TTTGTGGTGGCGATTGTCGAGT--CCTTTGTGGCGAATTTCG
ananassae ---CGATTTTTCCAT--TGTTGCGGTTGTCACAACTCCTTTTT------TTGTGCCAGAGGG---TTGCA---TCCT-TTTGTGGTGGCGATTGTT-TAT--CCTTTGTGGCCATCCTC-
pseudoobscura ---TGGCATATCCTT--TGTTGCGGTTCTTTCTACTCT--TTTTTTTTCTTTTTAGAGAGGG---TTGCA---ATCCTTTTGTGGTGACAATTGTGTC----CCTGTGTGTCGTGCTCC-
persimilis ---TGGCATATCCTT--TGTTGCGGTTCTTTCTACTCT--TTT------TTTTTAGAGAGGG---TTGCA---ATCCTTTTGTGGTGACAATTGTGTC----CCTGTGTGTCGTGCTCC-
virilis ---AGCCCTTT------TGTTGCGGT--------CGCA--TTT------TTTA-----CGGG---TTGCACACGGCA-----------CAATTGCCAC----CTTTTGTGGCAATTGTCG
mojavensis ---AGCCTTTTTTATCCTTTTTTCCT--------CACA--TTT------TTTAGCC--CGCGTCCTTGCCCGAAGCC-TTT-------CGCCTGCAGC----CTTTTGTTGCGGTCGCAT
grimshawi ---AAGCCTTT------TGTTGCGGT--------CGCA--TTT------TTTA-----CGGG---TTGCAC--GGCA-----------CAATTGCCGC----CTTTTGTGGCAATTGTCG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ------ACCCGG-----GATC-----GCAGTTTTTTACGATCCTCAACGG----G----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTG
simulans ------ACCCGG-----GATC-----GCTGTTTTTTACGATCCTCAACGG----G----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTG
sechellia ------ACCCGG-----GATC-----GCTGTTTTTTACGATCCTCAACGG----G----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTG
yakuba ------ACCCGG-----GATC-----GCTGTTTTTTACGATCCTCAACGG----C----------------TTTTACG------ACC--------TCCGCCCGTTTTTTAAGCCTTTCTG
erecta ------ACCCGG-----GATC-----GCCGTTTTTTACGATCCTCAGCGG----C----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTG
ananassae -------CCGGG-----GTTC-----GCTGTTTTT-----TTCTCAATAC----G----------------TTTATGG---TGCATC--------CGCGTCCGTTTTTTAAGCCTTTTTG
pseudoobscura -------TCGGG-----GTTCCCTCAGCCTTTTTTTACGAACCTCAAAGGATGCG----------------TTTTATG------GCCGTCCGCCGTCCGCTCGTTTTTTAAGCCTTTCTG
persimilis -------TCGGG-----GTTCCCTCAGCGTTTTTTTACAAACCTCAAAGGATGCG----------------TTTTATG------GCCGTCCGCCGCCCGCTCGTTTTTTAAGCCTTTCTG
virilis ----TCATTGTGCTGCCGGCT-----GC-------------TCGCAGTGC----G------AAGGTCCTTTTTTTGCA--------------------GCGTTTTTTTTAAGCCTTTTTG
mojavensis ----TTTTTATG-----GGTT-----GCAATCCTTT----GTGGCAAATC----GGTTGACATGGTCGATGTCCTGCAG----GACC--------TTCGCTTGTTTTTTAAGCCTTTCTG
grimshawi GCAATTGTAGTA-----GCTC-----GT-------------CCTCGATCC----G------CACGTCTTTTTTTTATGGCGAAGGTC--------CTTCCTTTTTTGTCAAGCCTTTCTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMM
melanogaster CTCTGCCATCCTCTGACCCGTTCAGTTCAAA-----TCAGTTCGGTG-TCAA---CTCTTTCGG------GTTCTCATAGCGGGTTGT--------AAAATCC----GGCTGGAACAATA
simulans CTCTGCCATCCTCTGACCCGTCCAGTTCTGATCAGTTCAGTTCGGTG-TCAA---CTCTTTCGG------GTCCTCTTCGCGGGTTGT--------AAAATCC----GGCTGGAACAATA
sechellia CTCTGCCATCCTCTGACCCGTCCAGTTCAGATCAGTTCAGTTCGGTG-TCAA---CTCTTTCGG------GTCCTCTTCGCGGGTTGT--------AAAATCC----GGCTGGAACAATA
yakuba CTCTGCTCTGCTCTGACCCGTTCAGTTCAGA-----TCAGTTCGGGG-TCAA---CTCTTTCGG------GTTCTCTTCGCGGGTTGT--------AAAATCC----CTCTGGAACAATA
erecta CTCTGCTCTCCTCTGACCCGTTCAGT----------TCAGTTCGATG-TCAA---CTCTTTCTG------GTCCTCTTCGCGGGTTGT--------AAAATCC----GTCAGGAACAATA
ananassae CTCTGCTCTCCTCTGACCCGTTCAGT----------TCAGTTCGGGG-TCAA---CTCTTTAGG------ACTTTCT----GGGCTGT--------AAAATCCT---TTCCCAAACAATC
pseudoobscura CTCTGCTCTGCTCTCTCC---TCAGATCAGA-----GCTCTCCGAAGATCAG---TTTTTTGGG------CTGCT------GGGTTGT--------AAAATCTCTCGCGCTGGAATAATA
persimilis CTCTGCTCTGCTCTCTCC---TCAGATCAGA-----GCTCTCTGAAGATCAGTTTTTTTTTGGG------CTGCT------GGGTTGT--------AAAATCTCTCGCGCTGGAATAATA
virilis CTCTGCTC----------------------------------------TCAA---CTCTTTCTG-CCAGAGTTCAGGTCGAGAGTTGTCTGTATCGTAAATAT----TAATGGAAGAATG
mojavensis CTCTGCTCTGCT----------------------------------G-TCAA---CTCTTTTTGCCCAGAGTTCAGTTCGAGCCGTGTTTTT----------------------------
grimshawi CTCTGCTC----------------------------------------TCAA---CTCTTTTTG-CCAGAGTTCAGGTCAGGAGTTGT---------AAATAT----CACTAGAATAATA
Summary MMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AAG-TTTTTGACCAGATTCCGGGAA-----GTGTGTA-GCGAT----------TTTTTAAAA--------------TG------------------TTTTTTTTTTTTTGTT--------
simulans AAG-TTTTTTACCAGATTCCGGGAA-----GTTTGTA-GCGAT----------TTTTTAAAA--------------TG------------------TTTTT---------TT--------
sechellia AAG-TTTTTTACCAGATTCCGGGAA-----GTTTGTA-GCGAT----------TTTTTAAAA--------------TG---------------------TT---------TT--------
yakuba ACA-TTTTTTACCAGATTCCCGGAA-----GTTTGTA-GCGAT----------TTTTTAAGA-------------ATG------------------TTTTG---------GT--------
erecta ACA-TTTTTTACCAGATTCTGGGAA-----GTTTGTA-GCGAT----------TTTTTAAAA-------------------------------------CA---------TT--------
ananassae A-A-TTTTTTATAAATTTCCTGGAAATTTTATTTAAG-GCTAT----------TTTTTAGTC--------------GA------------------TTTTT---------TG--GGCTGC
pseudoobscura AAA-CTTTTTACCAAATTCCTGGAA-----ATTTTCGTGCGATTTTTAGTTTGTTTTTAAAC--------------CAATTTTTGGGCCTGTGA--TTTTT---------TTTGGACAGC
persimilis AAA-CTTTTTATCAAATTCCTGGAA-----ATTTTCGTGCGATTTTTTGTTTGTTTTTAAAC--------------CAATTTTTGGGCCTGTGATTTTTTT---------TTTGGACAGC
virilis GAACTTTTTTATGGACTTCGCAGAA--------CCGA-GCTGC----------TTTTTGCTCGATCTTTTTGGCTAGG--------------------------------TT--------
mojavensis ----TATTTTAGCCACTTCTCAGAA--------GGAA-GTCAC----------TTTTTTACC--------------CG--------------------------------TT--------
grimshawi GCA-TTTTTTGTGCATTTCGCAGAA--------CTCA-ACTCG----------TTTTTTACT--------------AG--------------------------------GA--------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --TTTTTTAGAAGTGCAATCTTTATTTTGGCAAATTGTAGGAACTTAAGCGGAATTTA-------------------------------------------TTAG-GTTTCTCGG--AA-
simulans --TTTTTTAGAAGTGCAATCTTTATTTTGGCAAATTGTAGGGGCTTAAGCGGAATTTA-------------------------------------------TTAG-GTTTCTCGG--AA-
sechellia --TTTTTTAGAAGTGCAATCTTTATTTTGGCAAATTGTAGGGGCTTAAGCGGAATTTA-------------------------------------------TTAG-GTTTCTCGG--AA-
yakuba --TTTTTTAGAAGTGCAATCTTTATTTTGGCAAATTATAGGGACTTAAGCGGAATTTA-------------------------------------------TTAG-GTTTCTCAG--AA-
erecta --TTTTTAAGAAGTGCAATCTGTATTTTGGCAAATTGTAGGGGCTTAAGCGGAATCTA-------------------------------------------TCAG-GTTTCTCGG--AA-
ananassae GATTTTTTAGAAGAGCAATTATT-TTTCGCCAAATTGCAAGGGGTTAGGATGAATTTT-------------------------------------------TGGA-GTTTCCTGGAAAA-
pseudoobscura TATTTTTTAGAAGAGCAG-TTTTTTTTTGGCAA-----AGGGTTTTTAGTGGAATTTT-------------------------------------------TTTGTGATTCGCAG--AAT
persimilis TATTTTTTAGAAGAGCAGTTTTTTTTTTGGCAA-----AGGGTTTTTAGTGGAATTTT-------------------------------------------TCTGTGATTCGCAG--AAT
virilis --TTCTTTAGCGAAACGATT----TTTTAGCAA-------CGGGTTAAGCAGAATTCT---------------------------------------GGAACTAT-GTTTCCCGG--AA-
mojavensis --TTTTTATGCATCGCGATT----TTTT-GCTG-------GAACTTTTCTGGAATTCT---------------------------------------GTAACTGG-ACTTCGCGG--AA-
grimshawi --TTTTTTAGTGAAGCACTT----TTTTAGCAA-------CGGGTTAAGCGGAATTCTTCCATCAGCTTCGTGGAATGCTGCTTTGATTAGCACAGCTCAAATAG-TTTTCT-----AA-
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTT-CC-----------------------------------------ACA------TTTTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
simulans TTT-CC-----------------------------------------ACA------TTTTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
sechellia TTT-CC-----------------------------------------ACA------TTTTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
yakuba TTT-CA-----------------------------------------GCATTTTTTTTTTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
erecta TTT-CA-----------------------------------------CCA------TATTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
ananassae TGT-CC-----------------------------------------TCT------TTCTTTAA------------T-TAGCCAA-----------------AAAGGCTTAAAAAACTAA
pseudoobscura TTT-CC-----------------------------------------CCT------TTTCTTGA------------T-TAAAA-A-----------------ACAGG------------A
persimilis TTT-CC-----------------------------------------CCT------TTTCTTGA------------T-TAAAA-A-----------------ACAGG------------A
virilis TTC-GC----TTTGATTAGCACGGGTTAAACGGTTTTTTCTAATTTTCAG------TTTTTTACGAGCATTTTCTTT-CATTT-G-----------------AAAGGCTTAAAAAAT---
mojavensis TCCTGC----TTTGATAAG----------------------------CAG------CGCATAAAGTGTTTTCTAATT-TAGTT-TTTTTCTTTTTTACAAGCAAAGGCTTAAAAAAC---
grimshawi TTT-ACAATTTTTTACTCG----------------------------CTA------TTTTTTGTTTATATTTTTTTTGTAGCA-A-----------------AAAGGCTTAAAAAATA--
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CCGCAACCTTGGTGTT---AATTGAGATGGATAGATAAAGAAGATGTCCTTA---GGAAA-----------CTATCTTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
simulans CCGCAACCTTGGTGTT---AATTGAGTTGGATAGATAAAGAAGATGTCCTTA---GGAAA-----------CTATGTTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
sechellia CCGCAACCTTGGTGTT---AATTGAGTTGGATAGATAAAGAAGATGTCCTTA---GGGAA-----------CTATGTTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
yakuba CCGCAACCTTGGTGTT---AATTGAGATGGTTAGATAAAGGAGATGTCCTTA---GAAAA-----------CTATGTTTTTAAGTCGAAAAGCCAGAAAGTCA-----------------
erecta CCGCAACCTTGGTGTT---AATTGAGACGAATAGATAAAGAAGATGTCCTTA---GGAAA-----------CTATGTTTTTAAGTCGAAAAGCCAGAAAGTCA-----------------
ananassae ATTCAGCCTTGGTGTT---AGCTGAAAGAGATAGAAAAGG-----------A---CAAAA-----------CAATGTCCTTAAGTCGAAAAGCCAAAAAGTCA-----------------
pseudoobscura CCTCAGCCTTGG------------------------AAAAGTAATTTTCTCATTTGTAAATTGTTTATTTTTTGTATTTTTAAGTCGAAAAGCCAAAAAGTCACTTTTTTGTGCGTGTGT
persimilis CCTCAGCCTTGG------------------------AAAAGTAATTTTCTCATTTGTAAATTGTTTA-TTTTTGTATTTTTAAGTCGAAAAGCCAAAAAGTCACTTTTTTGTGTGTGTGT
virilis --GCAGCCTTGATTTTAAGAGTTCTCTCTTA---------------TTTTTT------TA-----TTTCTTATTTATTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
mojavensis --GCAGCCTTGAGTTT------------------------------TTCCTT------TA-----------GTTTGTCTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
grimshawi --GCAGCCTTGAGTTTAATGGCCAAACCGTACATAATTGGTAGGTGTTTTTC------AA-----------TCTTTTTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBB
melanogaster ---AATGCGATTTTTTATGGGAAC-AAGAC--AAAA--AAGGGTTTTGCGGAG--ATATCACGTG--GCGTGGTATCAGTTT---------------------------TTTTTTTCCGA
simulans ---AATGTGATTTTTTATGGGAAC-AAGAC-AAAAA--AAGGGTTTTGCGGAG--ATATCACGTG--GCGTGGTATCAG------------------------------TTTTTTCCAGA
sechellia ---AATGTGATTTTTTATGGGAAC-GAGAC--AAAA--AAGGGTTTTGCGGAG--ATTTCACGTG--GAGTGGTATCAG------------------------------TTTTTTCCAGA
yakuba ---AATGCTATTTTTTATGGGAAC-AAGACAAAAAA--AAGGGTTTTGCGGAG--ATTTCACGTG--GCGCGGAATCAG-------------------------------TTTTTTCAGA
erecta ---AATAC-GTTTTTTATGGAAAC-AAGAC--AAAA--AAGGGTTTTGCGGAG--ATTTCACGTG--GCGCGGTATCAG-------------------------------TTTTTTCAGA
ananassae ---AAAGTAGTTTTTTATCGGAAT-GAGACAAAAAG--AAGCCTTTTTTAGAG--GTTTCATGGA--GTGAGGCATTGG-------------------------------GTTTTCAGAA
pseudoobscura GTGGGTGTTTTTTTTTATCGAAATGGAAAC--AAAA--AAGGGTTTTGTGGAAACACTTCATGGGGTGTGTGGTATGACTTTT----------------------CCCCTTTTTTTAAGG
persimilis GTGTGT-TTTTTTTTTATCGAAATGGAAAC--AAAA--AAGGGTTTTGTGGAAACACTTCATGGGGTGTGTGGTATGACTTTT----------------------CCCCTTTTTTTAAGG
virilis ---AATGTTGCCCGT----GGACA-GCGAC--AAAG--AAA----TGCCGAAG--GCTGCGCTGA--GAGCGTGAAAAATTTGATTGCCTCAAA-----------AAATTGTGGCCAAAA
mojavensis ---AAAGTAGCCTGT----GGATT-GGTAT--AAAGCAAAA----TCCTCAAG--GCTTCGGTGA--GAGCGTGAAAAAATTGATTTGCACAAAAAACAAAACACAAATTGTGGCTAAAA
grimshawi ---AATG--GAATGT----GGAGA-GCGAC--AAAG--AAA----TTCTCGAG--ATTTCGTT-----AGCGGAAAAATTGTGG------------------------------CTAAAA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CAT--GTTGTGAA----CTTACAAAGACGAT-CATAAAGT--AGAT--------CTTA-ACC-CAAAGTTAA-TCT-GCTTTCGGAGAAAA-AAAC-TGCGGG-----CTCAAACGAAAG
simulans CAT--GTTGTGAA----TTTACAAAGACGAT-CGTAAGGT--AGAT--------CTTA-ACC-CAAAGTTAA-TCT-GCTTTCGGAGAAAA-ACGC-TGCGGG-----CTTAAACGAAAG
sechellia CAT--GTTGTGAA----CTTACAAAGACGAT-CGTAAAGT--AGAT--------CTTA-ACA-CAAAGTTAA-TCT-GCTTTCGGAGAAAA-ACGC-TGCGGC-----CTTAAACGTAAG
yakuba CAC--GTTGGTAA----CTTACAAAGACGAT-CATAAAGT--AGAT--------CCTA-ACC-CAAAGTTAA-TCT-GCTTTCTGGGAAAA-TCAC-TG---------------CGAAGA
erecta CACTTTTTAGGAA----CTTACAAAGACGAC-CATAAAGT--AGAT--------CTTA-ACC-CAAAGTTAA-TCT-GCTTTCTGGGAAAA-ACAC-TGCGG------CTTAAACGAAGG
ananassae TTT--ATTTTAAACAGGCTTACAAAGACGATCCATAAAGG--CAAT--------ACTA-ACC-CAAAGTTAA-TCTGGCTTACAAGGAAAA-ACTC-CATGGG-----CC----------
pseudoobscura TTT--TTTTTC------TTTAAAGGGAATAT-AATAAAGC--AGAT--------AGAA-ACC-GAAAGTTAA-TCT-GGTTTCGAGGGAAAGTCAT-CAGGGGAGGTCGCTAAACGA--G
persimilis --T--TTTTTC------TTTAAAGGGAATAT-AATAAAGC--AGAT--------AGAA-ACC-GAAAGTTAA-TCT-GGTTTCGAGGGAAA-----------------------------
virilis -----GTTAAAGG----CTTAGA------CT-CGTAAAAAAGAAATGCGCCTACAATA-GCC-ACAAGTCAA-TTT-TCAACCAAGTGAAA-TTCC-AG---------------------
mojavensis -----GTTAAAGG----CTTAGA------AT-CGTAAATA--AAATGGTTTTGTAAAAGGCT-AGAAGTTAATTTT-TTAACCAAGCAAAA-TTTCGAG---------------------
grimshawi -----GTTAAAGG----CTTAGAG-----GT-CGTAAA----AAACGTACTTA-AATA-GCTGAAAAGTTAA-TTT-TTCATTAGGTGAAA-TTCT-TA---------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GAAATGAAATCTAAACAACAGAGC-AA--GTCTTACTAAAAAT---AAATGAAAACCA---ATATAAGTTTATAAATT------TCAATTAGTAAATTTGTT-AACTCAACTATACAAAT
simulans GAAATGAAATGTAAATAGCATAGC-AA--GTCCAACTTAAAAT---AAATGAAAACCA---AGATAAAATTATAAATT----TTGCAATTATTAAATTTGTT-AATTCAGCTATACAAAT
sechellia GAGATGAAATCTAAGTAACATAGC-AA--GTCTAACTTAAAAT---AAATGAAAACCA---AGATAAATTTATAAATT------------------------------------------
yakuba CA---GAAATCTCAACAACTGAGA-AA--CCCTAACTTAAAGT---AAATGAAAACAA---AGATAAATGCATAAATTA--TTTACAATTATTAAATTTGCT-CACTCAATCATACAAAT
erecta CAGTTGAAATCTAAGCAACAGAGACAA--GCAAAACTTAAAAT---AAATGAAAATAT---TTATA----------------TTACTAATATTAAATTTGTT-AGCTCAATCATACTCAT
ananassae ---ATATATTTTAAG----------GG--GTAATGTTTAAAAG---ACATGCAGTTTT---TGGTAAAC----------------------GTGATTTTTCC-CACAAAACT--------
pseudoobscura GAGGTGGCTGCCACAAAGGAGAGG-AA--TTGCCACCGAGAGT---GGAAAAGTCACA---GAAGAAGGCTA------------------------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis ----TGAAAAGAAAAT---------TGGCTTCAAAATGAAATA---ATAGGCGAGCTA---AGATTGAGGAGAAAAATGAAATGTAAGCTAAGGAATTCAAG--------CAAACTCCAC
mojavensis ----AGAAAGCAAAAT---------TA--TGGAGAATGGCAGAGGCACAGAAAAACTAGATAAATAGAGGGAATAACTTAAATATAAATTTAAAAATTTTGT----------ATTTAAAT
grimshawi ----TGAAAGGAAAACA--------CA--TTTCAAATGAAATT---GTAG-----------CCATAGA----CTAATTCTAAAAATAATTTATGATTTCTTTCCCTTCCTCAATTTATAT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CGTGCCCGAT--TTTGAATAGCAATTACTGGAACCTGATAGACAATTATAATTAATCCCTCAAAATTAATATTCAGT-GCAGTTAGCTCAAAATTATACCAACT---CAT-----TG---
simulans CGTGTCCGAC--TTTGAATAGCAATTACTGGAACCTGATAGACAATTATAATTAATCCCTCAAAATTAATATTCAGT-GCAGTTAGCTCAAAAATATACCAACT---CAT-----TG---
sechellia -----------------------------------TGATAAACAATTATAATTAATCCCTCAAAATTAATATTCAGT-GCAGTTAGCTCAAAATTATTCCAACT---CAT-----TG---
yakuba CGTGCCCGCC--TTTGAACAACAATATCAGGTTCCATACAAATAATTATAATTAGTTCCTCATACTTGAAATTCAGT-GCAGTAAGCTCAAAATAATACCAACT---CAT-----TG---
erecta CGTGCCCTAC--TTTGAATTACAATATCTGGTGCC--TCAGATAATTATAATTGGTCCCCCATACTTGAAATTCGGT-GCAGCAAGCTTACAAATTTACCAACT---CAT-----TG---
ananassae -----------------------------------------GCAACCACAAATCATCAAACATA-TGGATGGGGGAG-ATCGTAAATTGAAAAGTTTAGCAACT---CATACTGGTT---
pseudoobscura ------------------------------------------------------------------------------------------AAATTTCGCCAACT---CAT-----TGACA
persimilis ------------------------------------------------------------------------------------------AAATTTCGCCAACT---CAT-----TGACA
virilis T-----------TTTCAGCACTTGGTAGAGGGCCCAGAT-----------------------------ATGTCCAAA-ATGATTAGTTCC-AACCATAGTCGCA---TAT-----AT---
mojavensis T-----------TTTCCATATTT---------------------------ACTTATCTATTAT--TTAATGTTTGACTATAATTTTGTGC-TACTTCAATTTTG---TAT-----AT---
grimshawi TTAGCCCATCGCTTTTAAAAGTTGTTTGACAGATCCACT--CTATTGCGCAACAGCCCATGATCATTATCGTCTGGCCAATATCTCGTCT-GAGCCATGTCTAACATTAT-----TG---
Summary BBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---------------AAGCACAAAATTTC--------AAAGCTAAGACTTAGC-----------CGTTTTTTG---ATTGCCTTCATAAATTGTA-------------------------
simulans ---------------AAGCACAAAATTTC--------A-----AAGACTTAGC-----------CGTTTTTTG----------------ATTGTA-------------------------
sechellia ---------------AAGCACAAAATTTC--------A-----AAGACTTGGC-----------CGTTTTTTG----------------ATTGTA-------------------------
yakuba ---------------AAGCACAAAATTTC--------AAAGCTACAACCTAGC-----------CATTTTTTG---ATTGCCTTCATAAATTGTGC------------------------
erecta ---------------AAGCACAACATTTC--------AAAGCTACGTCTTAGC-----------CATTTTTTG---ATTGCCTTCATAAATTGTA-------------------------
ananassae ---------------AATC-CGAAATTT---------------ACATCTCAGA-----------TGATTTTTG---ATTAGATTCATAAATTGAA-------------------------
pseudoobscura GATACAGATACAAACAGCCACAGAGCTAC--------AGATACATTCCATGGCAGATACAAGCACAGTTTTTGATGATTGCCTTCATAAATTGAATGTTTTGGG-TTTTTTTTTTGAGGA
persimilis GATACAGATACAAACAGCCACAGAGATAC--------AGATACATTCCATGGCAGATACAACCACAGTTTTTGATGATTGCCTTCATAAATTGAATGTTTTGGGTTTTTTTTTTTTAGGA
virilis ---------------ATACATACATGTTTTTTAAGCA-----------GCAGG-----------CGTGTCGCG---GTCGTATTCATAAATTGAA-------------------------
mojavensis ---------------AATTAAAACAATTTC------------------TCAGG-----------CGTGTCTCA---CTCACATTCATAAATTCAA-------------------------
grimshawi ---------------GTTCCGAACAATTC-------------------CCAGG-----------CGTGTCGCG---TTCGTATTTATAAATTGAA-------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -CTTCCA-AGTTGAATCTGATTTCGGCATTTT-CCAT------------C---TATGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
simulans -CTTCCA-AATTGAATCTGATTTCGGCATTTT-CCAT------------C---TATGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
sechellia -CTTCCA-AATTGAATCTGATTTCGGCATTTT-CCAT------------C---TATGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
yakuba -CTTCCA-CTTTGGAACTGATTTCGGCATTTT-CCAT------------C---TGTGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
erecta -CTTCCA-CTTTGGAGCTGATTTCGGCATTTT-CCAA------------C---TATGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
ananassae -TTTTCA-GTTCCAGCCCGGTTTCGGCATTTT-CCAT------------C-------ACAC-TAACGGGGTTAATTATCGCT-GCCG-CATTGCTCAATA----AGAAAAAATTAACATT
pseudoobscura ATTTTCA-TTTTGA----GATTTCGGCATTTTCCCAT------------T---CATCCATCGTAACGGGGTTAATTATCGTTAGCCGATGTTGGGCAATG----GG-AAAAATTAACATT
persimilis ATTTTCA-TTTTGA----GATTTCGGCATTTTCCCAT------------T---CATCCATCGTAACGGGGTTAATTATCGTTAGCCGATGTTGGGCAATG----GG-AAAAATTAACATT
virilis -ATTCAA-TTTTCAGC--AGCCCGATCAATTT-TCATGCCGGTCAGCCGC---CGTAACAC-CAACGAGGTTAATTATC----GGTG-CATTGCTCAATG---GGA-AAAAATTAACATT
mojavensis -TTTCAATTTTTCAGC--AACTGGATCGATTT-TCAT-----------GC---CGTAACAC-CAACGAGGTTAATTATC----GTCG-CATTGCCCAATGTGAAGA-AAAAATTAACATT
grimshawi -TTTCAA-TTTTCAGC--AACTCGATCAATTT-TCATGCCGGCCAGCAGCAGGCGTAGCAT-CAACGAGGTTAATTATC----GGCG-CATTGCCCAATG----GG-AAAAATTAACATT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTCTC-------------------------------------------------------------------------------------------------------------------
simulans TTCTC-------------------------------------------------------------------------------------------------------------------
sechellia TTCTC-------------------------------------------------------------------------------------------------------------------
yakuba TTCTC-------------------------------------------------------------------------------------------------------------------
erecta TTCTG-------------------------------------------------------------------------------------------------------------------
ananassae TTCTC-------------------------------------------------------------------------------------------------------------------
pseudoobscura TGCCCCTCCCCCTCCCCCTCCCCCACAGCCCCGCACCCACCCTTCCACTCCTTTTCATTCCTCTGCGATCTTTCCTGCTC----------------------------------------
persimilis TGCCCCTCCCCCTCAGC-----------CCCCGCCCCCACCCTTCCACTCCTTTTCATTCCTCTGCGATCTTTCCTGCTC----------------------------------------
virilis TTTTT--------------------------------------------GCTGTTGTTGTTGTTGCTTTTTTGTCTGTTTGGTCGGGCAGTCAGTCAGTTAGGCAGTCAGGCAAT---GC
mojavensis TTTTC---------------------------------------------CCCTCTTCGTCTTCGTCTTCTTCTCCTTCT--------------TCTGC------GTCAGTCACTTGGGC
grimshawi TTTTG---------------------------------------------TTTCTTTGGTTTCTTACTTTTTGTGTGTTC--GCAGTCAGTTAGTCAGTCAGGCAGTCAGTCAGTTAGTC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -----------------GGTGG-TG---------CGACTTCCTTTTGGGA---CCAGACAAAGAGAAGATCGGACCCTGGCAGAGATCCCCTCCCCCCCTCCATCACCCATTCAATTCGG
simulans -----------------GGTGG-TG---------CGACTTCCTTTTGGGG---CCAGACAAAGAGAAGATCGGACCCTGGCAGAGATGCCC---------CTATCCTCCATTCAATTCGG
sechellia -----------------GGTGG-TG---------CGACTTCCTTTTGGGG---CCAGACAAAGAGAA-----GACCCTGGCAGAGATACCC---------CCATCCCCCATTCAATTCGG
yakuba -----------------GCTGG-TG---------CGACTTCCTTTTTGGGGGCCCAGACAAAGCGAAGATCGGACCCTGACTGAGTCCCCA---------------CCCATTCGT-----
erecta -----------------GCTGG-TG---------CGACTTCCCTTTGGGG---CCAGACAAAGAGAAGATCGGACCCTCACTGAGTCCCCT---------------CCCATTCGC--CGG
ananassae -----------------GATGG-TG---------CGACTTCCTTTTGGGG---GCAAACAAAGAGAAGATCAGACCCTGGTCGGACCCCAT---------------CTCCTCCAC--TGG
pseudoobscura -------------TTCGGGTGTCTG---------CCACTTCCTTTGGGGA------GACAAAGAGAATATCAGACCCTGCC-----CCCTG---------------CCGCCTC----CAC
persimilis -------------TTCGGGTGTCTG---------CCACTTCCTTTGGGGA------GACAAAGAGAATATCAGACCCTGCC-----CCCTG---------------CCCCCTCCCCACCC
virilis GACGACTTCCTTTTGCAACAGA-AGACAAAGAGAAGAT----------CA---TAAGCCCCAG-------C---CCCAGCCGCAGTCCCAG---------------TCCGTGAAG-----
mojavensis AGTCAGGCAGTCAGGCAGTCGA-CGGCAATGCGACGACTTCCTTTT-GCA---ACAGACAAAGAGAAGATC---ATAAGCCTCAGTCCCGG---------------TCCATG--------
grimshawi ATTCAGTTAGCCAGTCATCCAA-TG---------CGACTTCCTTTT-GCA---ACAGACAATGAGAAGATC---ATAAGCCTCAGACCCGG---------------TCCATGGAG-----
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TGCCCCCAGA-----------TCTGCACCTC---CGCCACT----------------CGCCATATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGG
simulans TGCCCCCAGA-----------TCTGCACCTC---CGCCACT-------------CGCCGCCATATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGG
sechellia TGCCCCCAGA-----------TCTGCACCTC---CGCCACT-------------CGCCGCCATATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGG
yakuba TGCCCCCAAAAGCTGCACCTCCCCTCTCCCCACTCGCCACT----------------CGCCACATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGG
erecta TGCCCCCAAA-----------TCCGCTCCTC---CGCCACT----------------CGCCACATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGC
ananassae CCCCCTTGGA------GCAACTCCATCCCGC---CTCCATC----------------AGAGGGGCGGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAATCCCGGG
pseudoobscura CTCCCCCCCT-----------GCAGCCACTC---CACCCCT-------------CACCGTCCTGTGGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGTAAAAAT--CTGG
persimilis CCCCCCCCTT-----------GCAGCCACTC---CACCCCT-------------CACCGTCCTGTGGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGTAAAAAT--CTCG
virilis ---CTGCAGA-----------G--------C---TGCAGTC------------------------AGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAGACAAGT-TAAAT--CTGT
mojavensis --------GA-----------G--------C---TGCAGTT------------------------GGCTCATTACGCGGGTCGTGACTTGCCAAAATGAAAAACAAGT-CAAAT--CTGT
grimshawi ---CCGCGGA-----------G-----ACTC---TGCAGTCTTAGTCTCCATCTCCGTCTCAGTTAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-CAACG--CAGT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CAG------------GGGAGCAGAACAC-AA----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----ATATCT------------
simulans CAG------------GGGAGCAGAACAC-AA----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----ATATCT------------
sechellia CAG------------GGGAGCAGAACAC-AA----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----ATATCT------------
yakuba CAG------------GGGAGCAGAACAC-AG----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----CTATCT------------
erecta CAG------------GGGAGCAGAACAC-AA----------GAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----CTATCT------------
ananassae CAG------------GGGAGCAGAACACAAA----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCAG----AGATGCTG----ATATCT------------
pseudoobscura CAACACACAACAGAAAGAAACAGAAAGA-AA---------CAAAAACTTTATTGCAAC---------------GGATGCTTGTCAGAAGAAGATGCTGCAGCAGATCTGCCACCAGCAGG
persimilis CAACACAC----------AACAGAAAGA-AA---------CAAAAACTTTATTGCAAC---------------GGATGCTTGTCAGAAGAAGATGCTGCAGCAGATCTGCCACCAGCAGG
virilis AAG------------GGAGCCCGAA--C-AACAATAAAAT--------TTATTGCAGC-GACAGCGGATGCTTGGATGCTTGTC------AGATGCTG----ATATCA------------
mojavensis AAG------------GG-------------------------------TTATTGCAGCGGACAGCGGATGCTTGGATGCTTGTC------AGATGCTG----ATATCA------------
grimshawi AAG------------AGCGACTAAAAGC-AA-----------------TTATTGCAGC-------GGATGCTTGGATGCTTGTC------AGATGCTG----ATATCA------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---------------AAGAA---GGGGAAC----TTGGGAGGGGTCTTCGGAGAGGATGGGGT------------------------------------------------GGGGGT---
simulans ---------------AAGAA---GGGGAGC----TTGGGAGGGGTCTTCGGAGGGGATTGGGTG-----------------------------------------------GGGGGT---
sechellia ---------------AAGAA---GGGGAGC----TTGGGAGGTGTCTTCGGAGGGAATGGGGTG-----------------------------------------------GGGGGT---
yakuba ---------------AAGAA---GGGGAGC----CTGATGGGGGGCTTC-AAGGGGGTGGAGAGGT------------AGGGGGCT---------------------TCGAGGGAGT---
erecta ---------------AAGGA----GGGAGC----CTGGGAGGGGTCTTC-GAGGGGGCGTCGCG-----------------------------------------------GGGAGG---
ananassae ---------------GCGGATCAGGGGGGG----ATGCCAGG-GTCTTAAGAGCGGGTCAGGGGGTGTACAA-----AGGCGGGCTGGTGCG--------GCTGGTGGGGAAGGGGCCAA
pseudoobscura GGCGGCAGGAG----GGGAG---GGGGGGCGGCACCACAAGGGGTACAAAGAGTAGTTGGAGAGGGGGCAAGGGGGCACGGGGG------------GACTGCCACTGACAGGGCGGC---
persimilis GGCGGCAGGGGCGGCAGGGA---GGGGGGCGGCACCACAAGGGGTACAAAGAGAAGTTGGAGAGGGGGCAAGGGGGCAAGGGGGCACGGGGGGGTAGACTGCCACTGACAGGGCGGC---
virilis ---------------GTCGA---AGGCGGC----------GGCGT------------CGGCGGC-----------------------------------------------GACGGC---
mojavensis ---------------GTCGA---AGGCGGC----------GGCGGCGTCGGCGGCGACGGCGGC-----------------------------------------------GACGGC---
grimshawi ---------------GTTGA---AGGCGGC----------GGTGG------------CGGTGGC--------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --------ACGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGATCGCTCGCCAGCCTCAA-----------------
simulans --------TCGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGATCGCTCGCCAGCCTCAA-----------------
sechellia -------GCCGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGATCGCTCGCCAGCCTCAA-----------------
yakuba ---GGGGGCCGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGCTCGCTCGCCAGCCTCAA-----------------
erecta ---GGCAGCCGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGGTCGCTCGCCAGCCTCAA-----------------
ananassae ATCGACGGACGGGTGGCA---------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGATCGCTCGCCAGTCTCAA-----------------
pseudoobscura -------AGCGGGTGGCAGATGCAGACGCAGACGCAGCAAAAAATGTTAATCTCCATAAAATGGAAACAATGCGCCGGCGCAAAGA----------------------------------
persimilis -------AGCGGGTGGCAGATGCAGACGCAGACGCAGCAAAAAATGTTAATCTCCATAAAATGGAAACAATGCGCCGGCGCAAAGA----------------------------------
virilis -----------GTTG------------GCAGACGCAA-----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGA--------------CCAC----------------
mojavensis -----------GTTG------------GCAGACGCAA-----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGA--------------CCGATCAGC-ATC-------
grimshawi --------------G------------GCAGACGCAG-----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGA--------------CGATCGGGCGATCGAGGGCC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ----ATGTTTGGGCTCTGCAGC------TCCCGAAAG-------GCACTGGAAAA----AAAGCGAGTAT------CTATTTGAGAAAAAAATTATAGC-TGTATTATTA----------
simulans ----ATGTTTCAGCTCTGCAGC------TCCCGAAAG-------GCACTGGG-AA----AAAACAAGTAT------CTATTTAAG--AAAAATTATTAT-TATACTATTA----------
sechellia ----ATGTTTCAGTTCTGCAGC------TCCCGAAAG-------GCACTGGG--A----GAAACAAGTAC------CTATTTGAG--AAAAATTATTAT-TATACTATTA----------
yakuba ----ATGTTTGAGCTCTGCAGC------TCCCGAAAG-------GCACTGAG-AGAAATAAAATTAATATTTAAAACT-TTTTATTTACAACACGTTTT-TATGCTATTAAAATGCGTGG
erecta ----ATGTTTGAGCTCTGCAGC------TCCCGAAAG-------GCACTGGG-AA----AAAATGCATATAAACACCTATTTTAGTTGCAATTCCTTTTATATGTTATTAAAATGAATGG
ananassae ----CTGTTTTGAGCTTCCAGCAAACGGCCCCCATGGTCTCCTTACACTGGC-AA----AA-------AT------ATATTT-----------TATTTT-TATAAGGTTA----------
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi TCGA--------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ----------------------CT----------------------GTATTA-------------------TTATAATATTACATACTTTATCAATTTAATATAAAGATATCCAAGTCC-
simulans ----------------------TTACAAGAGAATATTATTTATAAAGTATTA-------------------TTATAACTT-AAATGCATACATACTTTCATATAAAGATATCCAAACTC-
sechellia ----------------------TTACAAGAGGATATTATTTCAAAAGTATTA-------------------TTATAACAT------------TACTTTGATATTTAGATATCCATCTTC-
yakuba TTGCA--------ATATTGCACTTACTAGAGAGTATTATTTTAAAAGTATCA-------------------GTGTA---------ACTTTATTATTAAAAGATTTAATTATCCATTTTCA
erecta TGGCATTAGCATTATATTACACTTATTAGTGAATATTTTTTCAAAATTATTATTCCAACTCTTTTGCTTATGTGTATATT----TACTTTATTAATACAAGTTTAAGATGCCCAATCGCT
ananassae ----------------------T--------AGGTTTATGTTAAAAAGACCA------------------------------AGTCCTCTGATAGAAGCACAAAAAGAGGTCAAAATATT
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -AGCAAAAATGTAT-------------------AATAATGTTGTTTAAATAAGAGAAAAATATCGAATCTCAGTT------CTTGTTGTGTTT-ATA-TATTATGG-------CA
simulans -AGCAAAAATGTAT-------------------AATAGTGTTCTTTAAATAAAAGAAACATCTGGAATCTCAGTT------CATGAAGTGTTT-ATA-TTTTGTGG-------CA
sechellia -AGCAAAAATGTAT-------------------AATAGTGTTATTTAAATAACAGAAAAATCTGGAATCTCATTT------CTTGAAGTGTTTAATA-TTTTATGA-------TA
yakuba TAGTAAAAATGTGGCAAGTGTTTATATGATTTTAAAAGTATTATTGCACAAAGACAGTTAACTCGAATCTTATTT------CATTAGGTGCCT-TTATTTTTTTGG-------CA
erecta TGGTAAAAATGTAGA------------------AAACTCGTTATTAAAATAAGAGCAAAAAATCGAAACTTGTTT------CTTGAAGTGCTT-TTA-TTTTGTGG-------CA
ananassae TTTACAAAATATATC------------------ATACATATTAC------------ATTATATCACACATTATTTTATTTCCATGTTATGTTT-AGT-TTTTATTAAATTTCTCA
pseudoobscura -------------------------------------------------------------------------------------------------------------------
persimilis -------------------------------------------------------------------------------------------------------------------
virilis -------------------------------------------------------------------------------------------------------------------
mojavensis -------------------------------------------------------------------------------------------------------------------
grimshawi -------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
cau