melanogaster CCG-ATTCTGGCTGTCAAATCCCGACAAAAGTTGCTCAACTTTCTGCCGGCGT-------GTCCTCCCGACTTGCGCAA-TTTTTCCG----AGGATATTCGAGCACTTTAATTTCATG-
simulans CCG-AATCTGGCTGTCAAATCCCGACAAAAGTTGCTCAACTTTCTGCCGGCGT-------GTCCTCCCGACTTGCGCAA-TTTTTCCG----AAGATATTCGAGCACTTTAATTTCATG-
sechellia CCG-ATCCTGGCTGTCAAATCCCGACAAAAGTTGCTCAACTTTCTGCCGGCGT-------GTCCTCCCGACTTGCGCAA-TTTTTCCG----AAGATATTCGAGCACTTTAATTTCATG-
yakuba CCGAAATCTGGCTGTCAAATCCCGAGAAAAGTTGCTCAACTTTCTGCCGGCAT-------GTCCTACCGACTTGCGCAATTTTTTCCA----AAGATATTCGAGCACTTTAATTTCATGT
erecta CCG-AATCTGGCTGTCAAATCCCGACAAAAGTTGCTCAACTTTCTGCCGGCAT-------GTCCTCCCGACTTGCGCAA-TTTTTCCA----AAGATATTCGAGCACTTTAATTTCATG-
ananassae AAA-AAACTGTTTGTCAAA-CCCGACAAAAGTTGTTCAACTTTCTGCCTGCAG-----AAGTCCTACCGACTTGAGCAA-TTTTTTTG--TAAGGATATTTGAGCACTTTAATATTATG-
pseudoobscura ----A---CGGCTG---------AGCAAAAGTTGCTCAACTTTCTGCCGTCAT--------CCGTGCGTCCTTACGCAA-TTCGTCGGCTCCCAGATATTTGAGCACTTTAATTTCATG-
persimilis ----A---CGGCTG---------AGCAAAAGTTGCTCAACTTTCTGCCGTCAT--------CCGTGCGTCCTTACGCAA-TTCGTCGGCTCCCAGATATTTGAGCACTTTAATTTCATG-
virilis CTG-TGTCTGTTTGTCAAA-CCCGACAAAAGTTGCTCAACTTTCTGCCGTCATTTGCGTCGGGCTCCTACTTTACGCAA-TTTCGGG-----TCGACATTTGAGCACTTTAATTTCATG-
mojavensis CTG-TATCTGTTTGTCAAA-CCCGACAAAAGTTGCTCAACTTTGTGCCGTCATTTGCCTC-GGCTCCTACTTTACGCAA-TTTCGAG-----CCGACATTTGAGCACTTTAATTTCATG-
grimshawi CTG-TCGCTGTTTGTCAAA-CCCGACAAAAGTTGCTCAACTTTCT-----------------GCTCCTACTTTACGCAA-TTTTGGGT----TCGACATTTGAGCACTTTAATTTCATG-
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTT---GGGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
simulans TTT---GCGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
sechellia TTT---GGGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
yakuba TTT---GGGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
erecta TTT---GGGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
ananassae TTT---GGGATTGTTCACATGATTTCTATAGATCAGATTGCTTATCGTCCCCTTGGATCCTG-----------------------------AGTCCTGTCTTCAGGC---CCTG------
pseudoobscura TTT---TGGATTGTTCACATGATTTCTCAAGATCAGATTGC-TAT--------------CTGCCTCGGTTCCTGC----CCCTTCCTCTC-TGTCT----------C---TGTC------
persimilis TTT---TGGATTGTTCACATGATTTCTCAAGATCAGATTGC-TAT--------------CTGCCTCGGTTCCTGC----CCCTGCCTCTC-TGTCT----------C---TGTC------
virilis TTTTCATGAATTGTTCAAATGATTTCTCAAGATCAGATTGCCTAT--------------CTG--------TCAGC----TACCATGTCCC-TGTTC----------CCAGCTCT------
mojavensis TTTTTATGAATTGTTCAAATGATTTCTCAAGATCAGATTGCTTAT--------------CTG--------TCAGCTACGTACCTTGTCCCTTATCC----------CCTACTCTGTCTCT
grimshawi TTTTCATTTATTGTTCAGCTGATTTCACAAGATCAGATTGCTTAT--------------CTT--------ACATT----TATCTTCGCCC-TATTT----------CCT-CGCT------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ------CCCCTGATTCAATTTG----------CCCGCCGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
simulans ------CCCCTGATTCAATTTG----------CCCTCTGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
sechellia ------CCCCTGATTCAATTTG----------CCCTCTGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
yakuba ------CCCCTGATTCAATTTG----------CCCGCCGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
erecta ------CCCCTGATTCAATTTGTCCGCCTGATCCCGCCGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
ananassae ------TTTCTGATTCAATTTG----------CTGGCCGTGTAATTATTGCGCTTTTA--------CTA------------G------------CTGCTTGTCCT----CTTTTT-----
pseudoobscura ------CCTCTGTCCC----TG----------TTCCTGATTCAATTATTGCGCTTTTT--------CTAGCTGTT------GTCGTCCCTGTTTCTGTTTCTCCTGATGC-CTCG-----
persimilis ------CCTCTGTCCC----TG----------TTCCTGATTCAATTATTGCGCTTTTT--------CTAGCTGTTGTCGTCGTCGTCCCTGTTTCTGTTTCTTCTGATGC-CTCG-----
virilis ------GCCCTGATTCAATTTG----------TGCACTGTGTAATTATTGCGCTTTTT--------GTA------------G------------TTGT-TGTACC----T-TTTATTTCT
mojavensis GCTTCAGCCCTGATTCAATTTA----------TGCACTGTGTAATTATTGCGCTTTTTCGTAGTTCGTA------------G------------TTGT-TGTACC----T-TTTG-----
grimshawi ------GCCCTGATTCAAT-------------------------TTATTGCGCTTTTTCT------GTA------------G------------CTATGTGTACC----T-TTTT-----
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --------------------GGG--TCTAATAGTCCACTTCCTGCCTT----TCAAGCCT------CTTGGG------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--GCG
simulans --------------------GGG--TCTAATAGTCCACTTCCTGCCTT----CCAAGCCT------CTTGGG------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--GCG
sechellia --------------------GGG--TCTAATAGTCCACTTCCTGCCTT----CCAAGCCT------CTTGGG------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--GCG
yakuba --------------------GGG--TCTAATAGTCCACTTCCTGCCCT----TTGGGCCT------CTTGGG------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--GCG
erecta --------------------GGG--TCTAATAGTCCACTTCCTGCCCT----TTAGGCCT------CTTGGC------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--TCG
ananassae --------------------GGG--TCTAATAGTTCACTTCCGGCCTC----CGGGG--T------TTTGGG------------GTTCCATTTGCACTTCAATTTGACGTGATTTCGCTG
pseudoobscura --------------------GGA--TCTAATAGTTCATTTCCTGCCTCGGGACTGGG-GT------C------------------TTCCATTTGCACTTCGTTTTGACGTGATTTC-GTG
persimilis --------------------GGG--TCTAATAGTTCATTTCCTGCCTCGGGACTGGGCCT------C------------------TTCCATTTGCACTTCGTTTTGACGTGATTTC-GTG
virilis ATATTATTTTATTTCTTTTTGGGACTCTAATAGTTTACTTCCTGGGTT----CCCTCCATGCTTGCACGCAA------------GCTTGGCTGCTCAGCCATTTGGATGTGATTT--CTG
mojavensis ---------AGATTTTGTTCGGGACTATAATAGTTTACTTCCTGGGTA----ACATCCTT------ACGAAA------CTAGC-ACTTGGTTGCTTAGCCATTTCGACGTGATCT--CTG
grimshawi --------------------AGACCTCTAATAGTTTACTTCCTGGGTT----CCATCCAG------CCAAAAAGGAGCTCAGCAGCTCGGCTCCTTGGCCATTTTGACGTGATTT--CTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AGTCGCTTCCTGTGGATCT------CGTTCTC--GGGA------AAGGATATT--CGGAGCTATCT--CC---------TTTACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
simulans AGTCGCTTCCTGTGGATCT------CGTTCCC--GGGA------AAGGATATT--CGGGGCTATCT--CC---------TTCACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
sechellia AGTCGCTTCCTGTGGATCT------CGTTCCC--GCGA------AAGGATATT--CGGGGCTATCT--CC---------TTCACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
yakuba AGTCGCTTCCTGTGGATCT------CGTTCCC--GGGA------AAGGATATT--CGGAGTTATCTTCCC---------TTCACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
erecta AGTCGCTTCCTGTGGATCT------CGTCCCC--GAGA------AAGGATATT--CGAAGTTATCT--CC---------TTCACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
ananassae AGTCGCTTCCTGTAGATCT------TGTTCTC--AGAACTCGACAAGGATATTCACGGACTTGTGT--CT---------CTGCCTTCCCC------TCTATCTGTTGTGCACT------T
pseudoobscura AGTCGCTTCCTGTGGATGT------CG---CC--GTGG------ATTGTCTCT--C---CTCCTCT--CCTGCGTGGCGTTCCCT---CC------CCTGTCTGTT-TGCACT------T
persimilis AGTCGCTTCCTGTGGATGT------CG---CC--GTGG------ATTGTCTCT--C---CTCCTCT--CCTGCGTGGCGTTCCCT---CC------CCTGTCTGTT-TGCACT------T
virilis AGTCGCTTCCTGTTGATGTTGCAGCCGCCTCG--CCTT------ATGAATCCT--TCAATCCTTTT--GT---------CTGACT---CTTGGAGACTTGTCTGTT-TGTACT-------
mojavensis AGTCGCTTCCTGTTGATGTGGCAGTCGGCTCGTTTCTC------ATG---CAC--TCAATCCTTTT--GT---------TTGGCT---TTTGGGGACTTGTCTGTT-TTTACT-------
grimshawi AGTCGCTTCCTGTTGATGT------CGCTTTG--GCTT------TTG---TCT--TC---CCTTTT--TT---------TTGGC-------GCGGACTTGTCTGTT-TGTCCT------C
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTGG-GTTTGACAGGCTTTTTGCTTTTACGAACTG------------GTGA--------ACTTTGCTGTCTCGCTCCGGCGGAAGTTGTCGTTAAAGGTTT-TCGTTTCCGCAGTTT-CT
simulans TTGG-ATTTGACAGGCTTTTTGCTTTTATGAACTG------------GTGA--------ACTTTGCTGTCTCGTTTCGGCGGAAGTTGTCGTCAAAGGTTT-TCGTTTCCGCAGTTT-CT
sechellia TTGG-ATTTGACAGGCTTTTTGCTCTTATGAACTG------------GTGA--------ACTTTGCTGCCTCGCTTCGGCGGAAGTTGTCGTCAAAGGTTT-TCGTTTCCGCAGTTT-CT
yakuba TTTGCGTTTGCCAGGCTTTTTGCTTTTATGAACTT------------TGCT--------GCTCTGCTGTCTTGCTCCGGCGGAAGTTGTCGTCAAAGGTTT-TCGTTTCCGCAGTTT-CT
erecta TTGG-GTTTGACAGGCTTTTTGCTTTTATGAACTT----------------------------TGCTGTCTCGCTCCGGCGGAAGTTGTCCACAAAGGTTT-TCGTTTCCGCAGTTT-CT
ananassae TTGG-TTTTGACATGCTTTTTGCTTTTATGAACTT----------------------------TGCTATCTCGCTCCAGCGGATGTTGTCTTCAAAGGATA-TCATTTCCGCCTTTTCCT
pseudoobscura TTGG-GTTTGATTCGCTTTTTGCTTTTATGAACTT----------------------------TGATGACTCGTTCCAGCGGAAGTTGTCCTCAAAGGATT-CCATTTCCGCAGTGC-CC
persimilis TTGG-GTTTGATTCGCTTTTTGCTTTTATGAACTT----------------------------TGATGACTCGTTCCAGCGGAAGTTGTCCTCAAAGGATT-CCATTTCCGCAGTGC-CC
virilis TTCG-GGTTGACATGCTTTTTGCTTTTATGAACTTTACTTTAACT--GCTG----AGCTGCATTGATTTCTCGTTTCAACGGAAGTTGCCCGAAACGGTTTCCCATTTCCGCACATT-GG
mojavensis TTCG-GGTTGACGTGCTTTTTGCTTTTATGAACTCTGCTTTGACTGAGCGG----AGTTGCATTGGTTTCTTGTTCGAGCGGAAGTTGCCTGAAACGTATTTTCATTTCCGCTGATT-TT
grimshawi TTTG-GATTGACATGGTTTTTGCTTTTATGAACTTTGCTGTATTT--GTTGTTGTAGTTGCATTAATTT--------AGCGGAAGTTGCTCGAAACGGTTTTTCATTTCCGCACATT-GG
Summary BBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GGGTGCA----------------TTTGCATATTATGAGCGC---CAA---------AAGACTTCTG----------ATTCTTTGTCTTCTTGGCGCC-AAAAGGGA--TAATTGATGGTT
simulans GGGTGCA----------------TTTGCATATAATGAGCGC---CAA---------AAGACTTGTG----------ATTCTTTGTCTTCTTGGCGCC-AAAAGGTA--TAATTGATGGTT
sechellia GGGTGCA----------------TTTGCATATTATGAGCGC---CAA---------AGGACTTCTG----------ATTCTTTGTCTTCTTGGCGCC-AAAAGGTA--TAATTGATGGAT
yakuba GGGTGCA----------------TTTGCATATTGTGAGCGC---CAA---------AGGACTTCTG----------ATTGTTTGTCTTCTTGGCGCC-AAAACGGA--TAATTGATGGTT
erecta GGGTGCA----------------TTTGCATATTATGAGCGC---CAA---------AAGACTACTG----------ATTCTTTGTCTTCTTGGCGCC-AAATCGGA--TAATTGATGGTT
ananassae GGGTGCA----------------TTTGCATATTTAGAGCGCGAAAAA---------AAAACTTTAG----------AAAATTTGTCTTCTTGCCGCCAAAAACAGA--TAATTGATGGTT
pseudoobscura GACTGCA----------------TTTGCATAAACCGAGCGC---CAAAATCTCGGTAAAATGTTTGCTTT------AATTCTACTTTTCTTGGCGCC-AAAAAAGA--TAATTGCTGGGC
persimilis GACTGCA----------------TTTGCATAAACCGAGCGC---CAAAATCTCGGTAAAATGTTTGCTTT------AATTCTCCTTTTCTTGGCGCC-AAAAAAGA--TAATTGCTGGGC
virilis ATGCGTA-TTTTTCTAAAATAAATTAACATAATATGGGCGC---CAA---------AA--------------------------------------------------------------
mojavensis ATGCATA---CTTAAAAAATAAATTTACATAATATAGGCGC---CAA---------AA----------TTATAAGAATTTTATGACAAAATGCTAGC-AAACTGCAGATAAC--------
grimshawi ATGCATAATTCACAAAAACTTAATTTACATACCATGAGCAC---CAA---------A---------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -----AC------------GCAATCGGGTTTGGTTAC-------AGTTTGGG-----------AAAGAGTTAAGCC----CGCCAAAAATG-TAGATTTATTTG--------AATA----
simulans -----TC------------TCAATCGGGTTTGGTTAC-------AGTTTGGG-----------AAAGAGTTAGGCC----CGCCAAAAATG-TAGATTTATTTG--------GATA----
sechellia -----TC------------TCAATCGGATTTGGTTAC-------AGTTTGGG-----------AAAGAGTTAGGCC----CGCCAAAAATG-TAGATTTATTTG--------GATA----
yakuba ----GTC------------TCAACTGGATTTGGTTAC-------AGTTTGGG-----------AAAGAGTTAAGCC----CGCCAAATATG-TAGATTTATTTGTAATTTCAAAGTGTTG
erecta ----GTC------------TCAAATGGATTTGGTTAC-------AGTTTGGG-----------AAAGACTTAAGCC----CGCCAAATATG-TAGATTTGCTTTTTCTTTCCAATT----
ananassae ----GTCATTTAAAGGTATTGAAATGTATTCGGTTAC-------ATTTTGGC-----------AAAGAGTTAAGCG----CGGTGCATATT-TGATTTTATTATTTTTTTAAAGGA----
pseudoobscura TGTCATC------------TTCGGAAGATTTGGTTACTTTTAATGGTTTGAGTTTGTCCCTTCCAAGTAGTACCCC----CGAAATCTTTT-TCGATTTCCATGTCAATGG-CATG----
persimilis TGTCATC------------TTGGGAAGATTTGGTTACTTTTAATGGTTTGAGTTTGTCCCTTCCAAGTAGTACCCC----CGAAATCTTTT-TCGATTTCCATGTCAATGG-CATG----
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------AAAATTAGGG-----------AGAAAATAAAGAGGAAAAGACACATATGATAAATGTATCAA--------AATA----
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -GTTATTCGCT----CTGAATTTTTATTC------TGATCCGAAATAAATC-TAATTCGTG---GATTTGCAAATCTTTAGAGATTAGTAATGT-GTCGAGACTAACGGCGGCCTTTAGG
simulans -ATAAATTGCT----CTGAATTTTTATTCATTGTGTGATCCAAAATATATC-TAATTCGTG---GATTTGCAAATCTTTGGAGATTAGTACTT------------GCGGCGGCCTTTAGA
sechellia -ATGAATTGCT----CTGAAATTTTATTCATTGTCTGATCCAAAATAAATC-TAATTCGTG---GATTTTGACATCTTCAGAGATTAGTACTGT-GTCGAGACTAGCGGCGGCCTTTAGA
yakuba TATTGATCGCC----CTGAAATGTTATA--------------ACAGAAATC-CTATTCAAG---GATTTGTAAATCTTTAGAGATTAGTATTTTAGTCTAGACT-CTGCTAGCTTTCAGG
erecta ----------T----CTGAAATGTTATAGAATGTCTGATTTTACATAAGTG-CGATTCGTG---GATTTGTAACTCTTTAGAGATTAGTATTGTGGTCTAGAC-----------------
ananassae -GTTGGGCACT-AGGCTTAAAGGTGAAGCA-----TGACT--------ATA-TGATACCTG---GAACCACTCACCAACGATATTTTTTATTATAATC----------------------
pseudoobscura -GATATCCGCT----CTGGGATATGCTTTGTGCT-AGATGGAAGATAGATC---------------------------------------------------------------------
persimilis -GATATCCGCT----C-GGGATATGCTTTGTGCT--------------------------------------------------------------------------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis -TATAAACACAAAGACTGAACTAATAATC--TGTATCAATGTAAGCAAATCACATTTTCTGCCCTATTTTCTCATCTATGATCA--AATATTT---------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMM
melanogaster ACTTGAAGGGTTTGACAGTG-------GGTG-----TGGGACTTCTTAAAGATTAAGTCCAATTTCTGTGTCTTTAAACCTAAGCATTC----------TA------TATATTTTACATG
simulans ACTTGAAGGGTTTGACAGTGGGTGTATGGTGT---ATGGGACTTCATAAAGATTATGCCCAATTTTTATGTCATGAATCCTAAGCAGTT----------TA------CATATTTTGCATG
sechellia ACTTGAAGGGTTTGACAGTG-------GGTGT---ATGGGACTTCAAAAAGATTATGCCCAATTTCTATGTCATGAATCCTAAGCAATT----------TA------CATATTTTGCATG
yakuba GGTTGAGAGGTTTGACTG-----------------TGGGGACTTCATAAAGATTAGGCCCATATCCCAAGTTAGG------AAATATTCAATATGATCCTA------TATATTTTACATG
erecta --TTCAGAGGTTTGAATGCG-------GGTGT-GTTGGGGACTTCATGAAAATGAAGCCCAATTCCGAGGTAAAGCAAACTAAACCTTCAGTATGATCACATTCAAGTATATTTTACAAG
ananassae -----ATATGTTTTAAAATG-------GTAAT-TTAGTAAAATAATTAAAAAAAAATTTAATTTATCATTCGAAGCATACTAATTTTTC-------CAACA------CTTGTCTGAATAG
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis --CTAGAGGCTTACATAACG------CGTTATCGACCTGAAATTTGAAAAGCACATGTTTCTTATCCAA------------------------------TA------CATGATCTACATA
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary MMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster A------------------ACATTCC-------TACGCATTTGTGAGGACATGTGCACTGAAATGCAAAA-ATTTTTCTGCGACACCAGATA-GCGACGTGCCATAAAACTGAAGCAAAA
simulans A-------------------------------------ATTTGTGAGGACATGTGCACTGAACTGCAAT------------------AGATA-GCGACGTGTCATAAAACTGTAACAAAA
sechellia A-------------------------------------ATTTGTGAGGACATGTGCACTGAACTGCAATA----TTTCTGCGGCACCAGATA-GCGACGTGCCATAAAACTGAAACAAAA
yakuba C------------------ATATTCC-------TACGCATTTGTGAGGACATGTGTACTGAACTGCAATT----GTTCTGCTGCACCAGATA-GCGACAAGCCATAAAACTGAAACAAAA
erecta A------------------ATGTTCC-------TACGTATTTGTGAAAACATGTGTTCTGAACTGCAATA----TTTCTGCTGCACCAGATA-GCGACAAGCAATAAAACTGAAACAAAA
ananassae AAACCAGAAAATAGTGGTCACACTCC-------TACACATCTCAATAGATATGGGTA---AAATTCAACCAAAATTTTCGGTGCACCAGATA-GCGACAAGCCATAAAACTGGAACAAAA
pseudoobscura ---------------------------------TACACAT-TATACGAGTGTGTGCA--------CAAAA------TCTGTTCTACCAGATATGCAGTATGCCATAAAACGGGAACAAAA
persimilis ---------------------------------TACACAT-TATACGAGTGTGTGCA--------CAAAA------TCTGTTCTACCAGATATGCAGTATGCCATAAAACGGGAACAAAA
virilis ----------------------------------------------------------------------------------------------------GCCATAAACAAAATACAAAA
mojavensis A-------------------------GGTGGAATATGTAAATATACGAAACTACGTTCGGCACG------------------------------------GTCATAAACGAAATACAAAG
grimshawi ----------------------------------------------------------------------------------------------------GCCATAAACCGAACACAAAA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBB
melanogaster CACTCATCTAATGACATTTCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--AAGCGCAGG-------GTCAGCGGTAGAATATCTCGGGAAATAACCAT-------G
simulans CACTCATCTAATGACATTCCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--AAGCGCAGG-------GTCAGCGGTAGAATATCTGGGGAAATAACCAT-------G
sechellia CACTCAACTAATGACATTCCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--AAGCGCAGG-------GTCAGCGGTAGAATATCTGGGGAAATAACCAT-------G
yakuba CACTCATCTAATGACATTTCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--AAGCGCAGG-------GTCAGAGCTAAAATACCTGGGGAAATAACCAT-------G
erecta CACTCATCTAATGACATTTCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--ATGCGCAGG-------GTCAGAGGTAAAATACCTGGGGAAATAACAAG-------G
ananassae CATTCACCTAATGATATTTCGGGTCTTTCCCACCAAAAGTCTGGCGCGATTCATAATGACCAAGAATTGAGGG-------ATCGCGGAGAGTATAGGACGGG------------------
pseudoobscura CACTCACCTAATGACATTTCGGGTCTTTCCCACCAAAAGTCTGGCGCGATTCATAATGAGGC--AAAGGTAAG-------G---GGAATGGAAAACTAGGGAACAGAAGCCG-------A
persimilis CACTCACCTAATGACATTTCGGGTCTTTCCCACCAAAAGTCTGGCGCGATTCATAATGAGGC--AAAGGTAAG-------G---GGAATGGAAAACTAGGGAACAGAAGCCG-------A
virilis CGTTCACCTAATGACATTTCGGGAGTTTCCCATCAAAAGTCTGGCGCGATTCATAATGATAGGCAATGGCAAG-GGTGCGGGTGCGGGTG--CGGCTGCGGGTGCGGCTGAT-------G
mojavensis AGTTCACCTAATGACATTTCGGGACTTTCCCATCAAAAGTCTGGCGCGATTCATAATGATGGGCGAGGGTAAG----------------------------------------------G
grimshawi CGTTCACCTAATGACATTTCGGGACTTTCCCATCAAAAGTCTGGCGCGATTCATAATGATGGTTAAGGGTGAGAGATATTGGTGAGGGTGGAAGGTGATGGGTAGGGATGATGGGTGAGG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GAA--ATAGGG------TCGGTCTTCCCT----CGAAGAGT----------------TTAC-------------TCAATGCTCAATGAAT--TCGGAGCGGCGGC---------GGCAAC
simulans GAA--ATAGGG------TCGGTCTTCCCT----CGAAGAGT----------------TTGC-------------TCAATGCTCAATGAAT--TCGGAGCGACGGC---------GGCAAC
sechellia GAA--ATAGGG------TCGGTCTTCCCT----CGAAGAGT----------------TTGC-------------TCAATGCTCAATGAAT--TCGGAGCGACGGC---------GGCAAC
yakuba GAA--ATAGGGTCGGTTTCGGTCTTCCCT----CGAAGAGT----------------TTGC-------------TCAATGCTCAATGAAT--TCGGAGCGACGGCGTCGGCGATGGCAAC
erecta GAA--ATAGGGTCGGTCTCGGTCTTCCCT----CAAAGAGT----------------TTGC-------------TCAATGCTCAATGAAT--TCGGACCGGCGGC---------GGCAAC
ananassae ------TAGGATCTCTCATCCTCATCCCT---------AGA----------------TTGC-----------------TGCTGAATGAAA--CGCATGCGTCGGC---------GGCAAC
pseudoobscura ACATCGTAGAG-------CACCCGTCCTCATAGCGACAGGCGGCAGGCGGCAGGTCATTGCGATCCTATCCGATCCGATCCTCAATGAATGCTGGAAGCGTCGGC---------GGCAAC
persimilis GCATCGTAGAG-------CAGCCGTCCTCATAGCGACAGGCGGCAGGCGGCAGGTCATTGCGATCCTATCCGATCCGATCCTCAATGAATGCTGGAAGCGTCGGC---------GGCAAC
virilis GAA---------------CAGC-----------CGGCGATG----------------GTTC-------------GCGCTGCTCAATGAAC------------GGT---------ATCAAC
mojavensis GAA---------------CAGC-----------CGGCAAAT----------------GTTC-------------TTGCTGCTCAATGAAC------------GGT---------GCCAAC
grimshawi GAA---------------CAGC-----------CGGTGATC----------------CTTT-----------CAACGCTGCTCAATGAAC------------GTT---------GCCAAC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTTT------GGGCCATAAAAGCGAAGAGCGGGATTTTTCCAC--CT-CCAGCATGCAAATGAAGTGAATTTCCCAGCTA----T--T----------TAACCC-TTTCATTTCGCTCGA
simulans TTTT------GGGCCATAAAAGCGAAGAGCGGGAATTTTCCAC--CT-CCAGCATGCAAATGAAGTGAATTTCCCAGCTA----T--T----------TAACCC-TTTCATTTCGCTCGA
sechellia TTTT------GGGCCAT-AAAGCGAAGAGCGGGAATTTTCCAC--CT-CCAGCATGCAAATTAAGTGAATTTCCCAGCTA----T--T----------TAACCC-TTTCATTTCGCTCGA
yakuba TTTT------GGGCCATAAAAGCGAGGAGCGGGAATTTTCCAC--CT-CCAGCATGCAAATGAAGTGAATTTCCCAGCTA----T--TTAACACTGTATAACCC-TTTCATTTCGCTCGA
erecta TTTT------GGGCCATAAAAGCGAAGAGCGGGAAATTTCCAC--CT-CCAGCATGCAAATGAAGTGAATTTCCCAGCTA----T--T----------TAACCC-TTTCAATTCGCTCGA
ananassae TTTT------GGGCCATAAAATCGAGCAA-GGGAATTTTCCAC--CTCCCGGCATGCAAATGAAGTGAATTTCCCAAACA----T--T----------TAACCCTTTTCCTTTCTTTCG-
pseudoobscura TTTTGGGCCCGGGCCGTAAAACCGAATCGCAA----------------ATGAAATGCAAATGAAGTGAATTTCCCAAATGTATCT--T----------TAACCC-TTTCACTTTGTTCAG
persimilis TTTTGGGCCCGGGCCGTAAAACCGAATCGCAA----------------ATGAAATGCAAATGAAGTGAATTTCCCAAATGTATCT--T----------TAACCC-TTTCACTTTGTTCAG
virilis TTTT------CGGCCATAAACATTAAAATACGAAATTTTCCGCTCTG-CGCCAAAGCAAATGAACAAAATTTCCCAAATG---CC--T----------TAACCC-TTTCGTTTCG-----
mojavensis TTTT------GGGCCATAAACAGTAAAACATGAAATTTTCCGCTCCA-AACCAAAGTAAATGAAGGAAATTTCCCAAATT---CT--C----------TAACCCTTTTTGGTTCT-----
grimshawi TTTT------TGGCCATAAAATACAAAA---AAAATGT--------A-TACATATTTAAATGAAGGAAATTTCCCAAAAT---GTTGC----------TAACCCTTTTCTGTTCG-----
Summary BBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AC--------------------CTCGAATTGCCATTAGCCGTGTGGCGTC----------------------------------------------------------------------
simulans AC--------------------CTCGAATCGCCATTAGCCGTGTGGCGTC----------------------------------------------------------------------
sechellia AC--------------------CT----------------------CGTC----------------------------------------------------------------------
yakuba AC--------------------CTCGAATTGCCATTAGCCGTGTGGCGTC----------------------------------------------------------------------
erecta AC--------------------CTCGCATTGCCATTAGCTGTGTGGCGTC----------------------------------------------------------------------
ananassae ----------------------TCCGAAATACCATTACGTGGATGGCGTC----------------------------------------------------------------------
pseudoobscura CTCTGGTTTTCTTTTTGTTTCGCTCGAAGTGTCATTAGGTCCATGGCGTC----------------------------------------------------------------------
persimilis CTCTGGTTTTCTTTTTGTTTCGCTCGAAGTGTCATTAGGTCCATGGCGTC----------------------------------------------------------------------
virilis ----------------------GCCGAAGCGTAATTAGGACTGTGGCGTCGTCAGACGCCTAACAACAATGTCATACAATGGCATAACTGTAGTTACA----------------------
mojavensis ----------------------GCCGAACTGTCATTAGGTTTGTGGCGTCGTCAGACGCCTGACAACAATGTCATACA-----------------GTAGTGGCATGTATTCTTATATAGT
grimshawi ----------------------GCCGAAGTGTCATTAGGAATGTGGCGTCGTCAGACGCCTGACAACAATGTCATATA------------------TA----------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --------------------------------------TTAACCCTT--TTCT--------CCGAGCCG--------------TCG--------------A-----------G-CAATTC
simulans --------------------------------------TTAACCCTT--TTCT--------CCTAGCCG--------------TCG--------------A-----------G-CAATTC
sechellia --------------------------------------TTAACCCTT--TTCT--------CCTAGCCG--------------TCG--------------A-----------G-CAATTC
yakuba --------------------------------------TTAACCCTT--TCTT--------CCGAGCCG--------------TCG--------------A-----------G-CAATTC
erecta --------------------------------------TTAACCCTT--TCTT--------CCAAGCCG--------------TCG--------------A-----------G-CAATTC
ananassae ----------------------------------------GACTGTA--TTTTATGACC-CCCGACCCGATCGCAGCCATGTCTCG--------------G-----------GCCAATTC
pseudoobscura ----------------------------------------GACTGTG--TTTTATGGCTACCCTAACCC--------------TTA--------------ACCCTTTCGATGG-CGATTC
persimilis ----------------------------------------GACTGTG--TTTTATGGTTACCCTAACCC--------------TTA--------------ACCCTTTCGATGG-CGATTC
virilis ----CCGAT----------------------------TTTGGTGCAC--GTTTATGAGT--CTTAACCC--------------TTTCGCTCACTATCAGCG-----------G-CGATTC
mojavensis GGCTGCGAT----------------------------TTTGATGCAT--GTTTATGAGT--GCTAACCC--------------TTTCGGCCACTATCAACT-----------G-TGATTC
grimshawi ----TGAATATATTATATACCCATATAGTAGCACCGATTTGTTGCTTTGTTTTATGAGC--TTTAACCC--------------TTTCGCT----------G-----------G-CGATTC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRR
melanogaster ATAAAAACG-------CAGCGAAAGTG----------CCATAAAAATCGAAGCCAACCCAAA--CGGTAGC-ACCT----------------GCATTCTTCGAAGACAAAAAGGTGCTAA
simulans ATAAAAACG-------CAGCGAAAGTG----------GCATAAAAATCGAAGCCAACCCAAA--CGGTAGCTACCT----------------GCATTCTTCGAAGACAAAAAGGTGCTAA
sechellia ATAAAAACG-------CAGCGAAAGTG----------GCAAAAAAATCGAAGCCAACCCAAA--CGGTAGCTACCT----------------GCATTCTTCGAAGAC-AAAAGGTGGTAA
yakuba ATAAAAACG-------CAGCGAAAGTG----------GCACAAAAAGCGAAGCCAACCCGTA--CAGTAGCTACCT----------------GCATTCTTCGAACACAAAAAGGTGCTAA
erecta ATAAAAACG-------CAGCGAAAGTG----------GCATAAAAATCGAAGCCAACCCGAA--CAGTAGCTACCT----------------GCATTCTTCGAAGACAAAAAGGTGCTAA
ananassae ATAAAAATG-------CAACGAAAGTG----------GCAAAAAAATCGAAGCCA--CCAAA--CGGTGGCTACCT----------------ACATTCTTCCAGGACAAAAAGGTGCTAA
pseudoobscura ATGAAAGCGAGTTGTCCAGCGAAAGTG----------GCATAAAAATCGAA--------AAG--AAACAGCTACCTG-GTGGCAG------GGCATTCTTCGAAGACAAAAAGGTGCTAA
persimilis ATGAAAGCGAGTTGTCCAGCGAAAGTG----------GCATAAAAATCGAA--------AAG--AAACAGCTACCTG-GTGGCAG------GGCATTCTTCGAAGACAAAAAGGTGCTAA
virilis ATAAAAATG-------CAGCGAAAGTG----------CCATAAAGATTGG---TAGCTCGAAACA-----CTACCTG-GTAGCCATTCTC-GGCATTCTTCGAAGACAAAAAGGTGCTAA
mojavensis ATAAAAATG-------CAACGAAAGTGCCAATGAGGACCATAAAACTTTG---CTGCCCAATGCAGCTCGCTACCTA-ACAGCCATTCTT-GGCATTCTTCGAAGACAAAAAGGTGCTAA
grimshawi ATAAAAATG-------CAGCGAAAGTGCCAATGAGCATCATAAAAATTGA--------------AATTCGTTACCTGCTTTTCTATTCTCTGGCATTCTTCGAAGACAAAAAGGTGCTAA
Summary RRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBB
melanogaster C---------------TCGTAATTAA-----------------------GACGA-ATAATCGCTACCT----------------------------------------------------
simulans C---------------TCGTCATTAA-----------------------GACGA-ATAATCGCTACCT----------------------------------------------------
sechellia C---------------TCGTCATTAA-----------------------GACGA-ATAATCGCTACCT----------------------------------------------------
yakuba C---------------TCGTCATTAA-----------------------GACGT-ATAATCGCTACCTAAACCG----AAGGCCCATA--------------------------------
erecta C---------------TCGTCATTAA-----------------------GACGA-ATAATCGCTACCTAAACCA----AAGCCCCATA--------------------------------
ananassae C---------------TAGGCTGTCT-----------------------AAC-A-ATAATCATTATCTCCTTTA----CCTGTATATG-------T------------------------
pseudoobscura CTAAAGTGCTCCGACATCATCATTAGCCGGAT--------------GACCACGC-ACGACCACGACCACGACGA----CGGCTACACA-------TA--GTAGCGGCAACACCTTCTCCC
persimilis CTACAGTGCTCCGACATCATCATTAGCCGGAT--------------GACCACGC-ACGACCACGACCACGACGA----CGGCTACACA-------TA--GTAGCGGCAACACCTTCTCCC
virilis CTACAGTTTTTAAACATCATCATTAGCCGCAGCCGACCTCTGGCCAGGCGACTATGGGTCGGCTGCCGTGCCTA-----GTCTATACC-------TGGCGCAGTCGTAACACCCGAGC--
mojavensis CTACAGTTTTTGTGAACCATCATTAGCCTTAG-----CTCTACCCAGGCGACGACGCGTCGGCTGCTGCGCCCGCTTGCGCCCCTACC------------------TACCACCCGCTC--
grimshawi CTACAATTTCTCAATATCAATATGATAATTAG-----CCTTAGACAGACTACG--GTGCCCGTTG-TGTGCCCC---TCTTCTCTACCTAAGACTTAAGGCAGTTGTGACACCCGCTC--
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -AGATCCTTTCGCTTTT----CG--------------------------------------------TCCTCAAGGAACTTTGT---AAAAAAGTCGCA-----------AAAATTCTGG
simulans -AAGTCCTTTCGCTTTT----CG--------------------------------------------TCCTCAAGGAACTTTGT---AAAAAAGTCGCA-----------AAAATTCTGG
sechellia -AAATCCTTTCGCTTTT----CG--------------------------------------------TCCTCAAGGAACTTTGT---AAAAAAGTCGCA-----------AAAATTCGGG
yakuba AAAATCCTTTCGCTTTT----CG--------------------------------------------TCCTCAACGAACTTTGT---AAAAAAGTCGCA-----------AAAATTCGGG
erecta AAAATCCTTTCGCTTTT----CG--------------------------------------------TCCTCAAAGAACTTTGTTAAAAAAAAGTCGCA-----------AAAATTCTGG
ananassae ACAACCCTTTCGCTTTC----AG--------------------------------------------ACCTGCTCAAACTTTGC---TAAAAAGTCATATGCTTTCCTCCATTTTTCCAA
pseudoobscura AAAATCCTTTCGCTTTT----CGCAGCA-GCATG-----------TCCTGCAG-------------CCCTCCAATAAACTTTGC---TAAAAAGTCATA-----------GGATTCGGGG
persimilis AAAATCCTTTCGCTTTT----CGCAGCA-GCATG-----------TCCTGCAG-------------CCCTCCAATAAACTTTGC---TAAAAAGTCATA-----------GGATTCGGGG
virilis -AAACCCTTTCGCTTT-----CGCAAGGCGCAAGTCGGCCGCTCAACCTGCATTTCATTTTTTATTGTTTTGAAGGAATTTTGC---TAAAAAGTCATATGTTGAACGC--TTTTCCCCG
mojavensis --AACCCTTTCGCTTT-----CGCAAGGCGCAAG------GCTTAACCTGCA--------------GTCTTTAAGGAATTTTGC---TAAAAAGTCATATGCTGTATGC--TTTTCGCCG
grimshawi --AATCCTTTCGCTTTTCCTCCGCTGCCCGCAAA------------CCTGCAATTG----------AACCATAGAAATTTTTGC---TAAAAAGTCAGATGCTTTGCGCGATTTTCCCAG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GAA-TTTTTTATTCA-----------CTTT--------------TATTCAT----------------CGGCGACCTTGAATGGCCGTTTTGATGGCGGTGGGTGG-----TTACCT----
simulans GAA-TTTTTTATTCA-----------CTTT--------------TATTCAT----------------GGGCGACCTTGAATGGCCGTTATGTTGTCGGTGGGTGG-----TTACCT----
sechellia GAA-TTTTTTATTCA-----------CTTT--------------TATTCAT----------------GGGCGACCTTGAATGGCCGTTATGTTGTCGGTGGGTGG-----TTACCT----
yakuba GAA-TTTTTTATTCA-----------CTTT--------------TATTCAT----------------CGGCGACCTTGAATGGCCGTTGGGTTGGCAGTGGGTGG-TTGCTTACCT----
erecta GAATTTTTTTATTCA-----------CTTT--------------TATTCAT----------------CGGCGACCTTGAATGGCCGTTGGGTAGGCAGTGGGTGG-----TTACCT----
ananassae GAACTTTTTTATTCATCATTTTTATTTTTT--------------TATTAGC----------------TAGCGACCTTGAATGGCCAGTGGGATGAAAGCGGGTTGCCTACCTATGT----
pseudoobscura CGA-ATTTTCATGGA----------ATTTT--------------TATTCATTTTTTAGGCTGCGGTACTGCGACCTTGAATGGTCGT--------CAGTGGGTCG-----GTACCT----
persimilis CGA-ATTTTCATAGA----------ATTTT--------------TATTCATTTTTTAGGCTGCGGTACTGCGACCTTGAATGGTCGT--------CAGTGGGTCG-----GTACCT----
virilis GAATTGGTTTATTCA-----------TTTT---------------------------------------TTGGCCTTCAAGT--------------------------------------
mojavensis GAATATCATTATTGA-----------CTATGCTTCTTCTTCTGTTTTCCA-----------------AGTTGACCTTCAATTGGCAT----------ATGACCAT-----ATGCGTCTTA
grimshawi AATCAGTTCTATTCA-----------CTTT--------------TTTCCA-----------------CTCTGACCTTGAATG-----------------GGGTGT-----GTACGTGTT-
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GGCTTAGGTAGGCG-----ATAGACTGAAATATTCCGACCTGCCG----GTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCC----------CGGATTAGCGACTGA-
simulans GGCTTAGGTATGCGA-TATATAGACTGCAATATTCCGACCTGCCG----GTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCC----------CGGATTAGCGACTGG-
sechellia GGCTTAGGTATGCGA-CATATAGACTGCAATATTCCGACCTGCCG----GTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCC----------CGGATTAGCGACTGG-
yakuba GGCATAGGTAGGCGA-TATATGGTCTGCAATATTCCGACCTGCCG----GTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCC----------CGGATTAGCGACTTG-
erecta GGCATAGGGACGCGA-TATATAGACTGCTATATTCGGACCTGCCG----CTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGTTAATCCCC----------CGGATTAGCGACTCG-
ananassae AGCTCAGGTATAAGC-TGTATA--------------GGCCTGCTG----CTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCGG----------GGGATTAGCAGATGG-
pseudoobscura GAGTGTTGTGCAGGACTGTGTAG------------------GTCT----CTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCCG---------CGGATTAGCAGCTTG-
persimilis GAGTGTTGTGCAGGGCTGTGTAG------------------GTCT----CTGACTGATGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCCG---------CGGATTAGCAGCTTG-
virilis AGGCTACCTACGTCCTTACCTGCA---------GCTCGGCTGCCTGAGTGCGACTGCTGTTTAAGGACTTGTGGTGGATTTATCGCTAATCCACTGGGATTAGCGGAATTAGCAACTCG-
mojavensis GGCCTACCTGAGTGTCGATCTGTA---------TCTTGGCTGCCTGCGCGCGACTGCTGTTTAAGGACTTGTGGTGGATTTAGCGGTAATCCGCGGGGATTAGCGGGATTAGCAGTTCG-
grimshawi GGTTTACCTGTGAATTTACCT-----------------GCTGCCTGC-------------TTAAAGTCTTGTGGTGGATTT-GCGCTAATCCACGGGGATTAGTGGTATTAGGCGCTCAC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ACGGCGTTCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAAGGAAAGGGGAAA-----------TCACTACCA-----AACTCA------------
simulans CCGGCGTCCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAGGGAAAGGGGAAA-----------TCACTACCA-----AACTCA------------
sechellia CCGGCGTCCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAAGGAAAGGGGAAA-----------TCACTACCA-----AACTCA------------
yakuba CCGGCGTCCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAGCGAAAGGGGAAA-----------TCACCACAG-----CGCTCA------------
erecta CCGGCGTCCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAAGGAAAGGGGAAA-----------TTACTGCA------CACTCA------------
ananassae CCGGCGTTCCGAT-------------TTCATTAAGTACGGGAGCT-ATACGTAGACTGAATGAAAGGAAAAGGGGAA-------AATTTTACTACTATTTTTAACTGAACTGCTCCGACG
pseudoobscura CCGGCATTTCGCATATTTCGGCATTTTTCATTAAGTACGGGAGCT-GTACTTGGTCTCAATGAAA-GCGAGGGCAAA-------------------------------------------
persimilis CCTTCATTTCGCATATTTCAGCATTTTTCATTAAGTACGGGAGCT-GTACTTGGTCTCAATGAAA-GCGAGGGCAAACGGGGGAAAAATTACTATAT-----------------------
virilis CCGGGGTTGCGAT-----------ACTTCATTAAGTAATGGAGCT-GTACTTAACTTGAATGAATG-----------------------TACTGCTC----------------------G
mojavensis CCGGCGTTACAGA-----------ATTTCATTAAGTAATGGAGCG-CTACTTAACTTGAATGAAAG-----------------------TCGCGCTC----------------------G
grimshawi CCGGCGTTACGAT-----------CTTTCATTAAGTAATGGGGCT-GTACTTAACTTGAATGAAAG------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --AACTTCCTAAAGTCATATATTCCGTAACTACAACTTGATGAATGACAAATTGCTTTATTGCCACAA-----TCAAGAAATGTTATCTCTAAAATTC-CAAATTAATTAAATAGTAATT
simulans --AACTTCCTAAAGTCGTATATTCCGTAACTACAACTTGATGAATGACAAATTGCTTTATTGCCACAA-----TCAAGAAATGTTATCTCTAAAACCC-C-GATTAATTAAGAG------
sechellia --AACTTCCTAAAGTCGTATATTCCGTAACTACAACTTGATGAATGACAAATTGCTTTATTGCCACAA-----TCAAGAAATATTATCCCAAAAACCC-C-GATTAGTTAAAAACTGTTC
yakuba --AACTTCCTAAAGTCGTATATTCCTCAACTACGACTTGATGAATGACGAATTGCTTTATTGCCATAA-----------------------GAAAACT-C-GCTACATTCAGAAGCAG--
erecta --AACTTCCTAAAGTCGTATATTCCGTAACTACGACTTGATGAATGACAAATTGCTTTATTGCCACAA-----TCAAGACAGGTTGTATCTAAGAACC-C-GATAAATTCATAAGCTGTA
ananassae GCAACTTCCTAAAGTCATATATTCTGTA---------------------GATCGTTTTATTACAATAAAAATATGAAAATGTGTTTTTTATTAATA-----GATATATTTTAAACAAATT
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis GCGTTTTCCTG------------------------------------CAAATTTC-------CC-----------------------------------T-GGTAAGTTCA--------A
mojavensis GAGATTTCCTG------------------------------------CGAATTTC-------CCTTAG-----GTA--AATTCAATTGAA-------ATT-GG--AGCCCAGGA---ATA
grimshawi -----------------------------------------------CAAATTTTTGCACCACCTGAG-----TTAATAAATAATTTGCAAAAAAGTATT-TGTCATTTCTTAACGTGTT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TT--AAATGTATTGGCC---------------CTTGGA---------------------------AACTGTTTAAAGAAC--TATGCGAATT----GACTATTACCACATATTAGTTGTT
simulans ----AAGAGTATTGGCC---------------TTTGGA---------------------------AACTGTTTTCAAAAC--TATACGAATT----------------------ATTATT
sechellia TT--AAATAAATTGGGC----------------TTGGA---------------------------GACTGTTCCTAAAAC--TATA----------------------------GTTGTT
yakuba -----------------------------------------------------------------TACAGTTTCCAAAAC--TATACATA---------TACTAC--ATTATTGTTTGTG
erecta TT--GAATATTTTAGCA---------------ATACAAAGTTTAAACACTTGGCTTGCAGTAGCCTACAGTTTCCAAAAC--TATATACATT----AACTATTACGAATTATTGTTCGTT
ananassae TTTAAGAAGCATTAGAC--------AGACCTCTATAAA---------------------------GAAAATCTAAGCAAC--TT-----------------------------AATTATT
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis TT--GAAAT--TGGAGCTGAGGAATTTTTGTAATTATG---------------------------AATTATGTGGGAAAG--TTTGATAACGAGTA------------------------
mojavensis TT--TATAC----GATC--------------------G---------------------------AATTATATGGGAAAG--TTAGATAATGAGAAAAATAA-------TGGGAG-----
grimshawi TT--AAAAA----GATT-----------------TTTA---------------------------AATTACAACAGGAAGTTTTTGATTAAAATTTACTTAACATTTATTGATAGGC-TT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ATGTTAAAA--GCAATGACTAAA-----------TTTTCGCTTAG--------TTGT------GAACATACTCA--------------TAC-----------AACGTGGGAAGATCG---
simulans ATACCATAC-GAGAATGACTAAA-----------TTTTCGCTTGG--------TTAT------GAACATACTCA--------------TAC-----------AACGTGGGAAGATCG---
sechellia AT---------AGCTTGGCAAAC-----------TTTTCGTTTGG--------TTAT------GAACATACTCG--------------TAC-----------AACGTGGGAAGATCA---
yakuba ATTGTA----------------------------------------------------------AACATTTTAAATATAAAACATGTTTAAC----------AACGTGGGAAGATCT---
erecta GTAGTAAGT--GCAATGACTAAA-------------TTCGTTTGG--------CTTG------GAACTTAATAAATATAAAAATTATTTAG-----------AACGTGGGAAGATCC---
ananassae TTGA-------AATATGAAAAAC----------CCTTTTATTTAAATAGATATTTTT------AAACTTACTAA------------CTTAGTCTGTGAAACGATCGTGGGAAGCTTT---
pseudoobscura -------------------------------------------------------------------------------------------------------ACGTGGGAAGCGGG---
persimilis -------------------------------------------------------------------------------------------------------ACGTGGGAAGCGGG---
virilis -----------CAGCTGT------------------------CAG--------TTAT---------------------------------------------------------------
mojavensis -TGGGAGTGGGCAGCTGG------------------------TAG--------CAAT---------------------------------------------------------------
grimshawi TTGGGAAAATAGGACTGGTTAATAAGGAGTGAAACTTTTA--TAG--------TTATTGACTG----------------------------------------ATGTGGGAAACTTTTGG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --AACAGAT----------------GCAGC--------------CTCC-----------TCATCTGCA---TATTCACGAGTTCCCACAATTATA-------------------------
simulans --AACAGAT----------------GCAGC--------------CTCC-----------TCATCTGCA---TATTCACGAGTTCCCACAATTATA-------------------------
sechellia --AACAGAT----------------GCAGC--------------CTCC-----------TCGTCTGCA---TATTCACGAGTTCCCACAATTATA-------------------------
yakuba --AGCAGAT----------------GCAGC--------------CTCC-----------TCATCTGCA---TATTCATGAGTTCCCACAATTACA-------------------------
erecta --GACAGAT----------------GCAGC--------------CTCC-----------TCATCTGCA---TACTCATGAGTTCCCACAATTATA-------------------------
ananassae --ACCGAAT----------------ACCGA--------------TTCT-----------GCTTATAAA---TATTCATGAGTTCCCACAATTAAG-------------------------
pseudoobscura --GACAGAT----------------GCTGAGGCTGCGACTGCCGCTGC-----------CTCTTTGCA---TATTCATGAGTTCCCACAATTAAGT------------------------
persimilis --GACAGAT----------------GCTGAGGCTGCGACTGCCGCTGC-----------CTCTTTGCA---TATTCCTGAGTTCCCACAATTAAGT------------------------
virilis --GCTATGG----------------ACAGC--------------ATCAACTGAAGCGAAGATCATACA---TATTCATGAGTTCCCACGACAAACCC---------TAAACCAGTCA---
mojavensis --ATTAGAG----------------ACAGC--------------ATCAATTGAAGCGAAGGTCATGCA---TATTTCTGAGTTCCCACGATAAACCCTTAGTTAGTCAGCACAGTCACAT
grimshawi TAGCAAGAGCAGCTGACAGCTGCGTGCAGC--------------ATCAATTCAATCAAATAGTCTACAAATTATTCATGAGTTCCCACGATAAAGAACACGCTAGTTGCTTCAGTCACAT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --------ATTACTTC--AAACT---CAATGAACGG-----TCAAGGGAA--TGT----C-AAAAATTGATATGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
simulans --------ATTACTCC--AAACT---CGATGAGCGG-----TCAAGGGAA--TGT----C-AAAAATTGATATGTCTTCGTCATCTGGTTTAGTAGAGCATC------------------
sechellia --------ATTACTCC--AAACT---CGATGAGCGG-----TCAAGGGAA--TGT----CAAAAAATTGATATGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
yakuba --------ATTACGCCCTGAACT---CGATGAACGG-----TCAAGGGAA--TGC----C-AAAAATTGATATGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
erecta --------ATTACTCC--AAACT---CGTTGAACGG-----TCAAGGGAA--TGC----C-AAAAATTGATATGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
ananassae --------CCGACTCCCGGAACT-----------GG-----TCAAGCGAA--TATTGACC-AAAAAGTGAAACGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
pseudoobscura --CCTCCCGCCACTCT--GGACT---CTG-GACTGG-----TCAACAGAA--TGT----C-AAAAATTGATATGTCATCGTCATCTGGTTTACTAGAGCATCATCCCACAAGGCACATCA
persimilis --CCTCCCGCCACTCT--GGACT---CTG-GACTGG-----TCAACAGAA--TGT----C-AAAAATTGATATGTCATCGTCATCTGGTTTACTAGAGCATCATCCCACAAGGCACATCA
virilis ---------------C--AAATTGACCGATGGTCAG-----AGTATAGTACTTAC----T-AAAAATTGATATGTCATCGTCATCTGGTTTACTAGAGCATC------------------
mojavensis CAC-----ATCATT-C--AAATTGACCGATGGCCAG-----AGAACAGTA--TAC----T-AAAAATGAATATGTCATCGTCATCTGGTTTACTAGAGCATC------------------
grimshawi CACATCCGATCACT-C--CAACTGACCGATGGTTAGTTGAAACAAAAAAA--AAA----A-ACAAATTGAAGTGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -------------CT-CCCCCCATGG-------------A---AG------------------------TCCA---GCTAATGAT-------CG--G-----------------------
simulans -------------CT-CCCCCT-TGG-------------A---AG------------------------TCCG---GCTAATGAT-------CG--G-----------------------
sechellia -------------CT-CCTTCT-TGG-------------A---AG------------------------TCCG---GCTAATGAT-------CG--G-----------------------
yakuba -------------CT-CCCCTT-TGG-------------AGGGAG------------------------TGCG---GCTAATGAT-------CG--G-----------------------
erecta -------------CT-CCCCCT-TGG-------------A---AG------------------------TCCA---GCTAATGAT-------CG--G-----------------------
ananassae -------------CT-CCTCCC-GGG-------------A---AC------------------------TTTG---GCTAATGAT-------CTTCA-----------------------
pseudoobscura ATACGATCATCAACTCCCCCGC-TCG-------------A---CGGCACAGGGGCACCCTCTGCCC---TCCA---GCTAATGAT-------CA--G-----------------------
persimilis ATACGATCATCAACT-CCCCGC-TGG-------------A---CGGCACAGGGGCACCCTCTGCCC---TCCA---GCTAATGAT-------CA--G-----------------------
virilis -------------AT-AATCAA-CAGAAAGAGAGAGTGAG---AT---------CCCTCTCTGACCCACTCAACGGGCTAATGATCTGCGAGCT--GCATCGT-----------------
mojavensis -------------AT-AATCAA-CAG-------------T---AT---------TCAGCATTGTACCA-TCCATGAGCTAATGAT-------CT--GAATCGT-----------------
grimshawi -------------AT-AATCAA-CAC-------------G---GT------------GCTCGCTCCCTTGCCATAGGCTAATGAT-------CT--GCAACATTTTTGGAAAATACGGGA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---------------------AATAGCAA--CACACGCAAGCGAATTCC-------CATGCAGCACACCTGAG-----------------------------------------------
simulans ---------------------AATAGCAG--CACACGCAAGCGAATTCC-------CATGCAGCGCACCTGAT-----------------------------------------------
sechellia ---------------------AATAGCAG--CACACGCAAGCGAATTCC-------CATGCAGCGCACCTGAG-----------------------------------------------
yakuba ---------------------AATAGCAG--CACACGCAAGCGAATTCC-------CATGCAGCACACCTGAG-----------------------------------------------
erecta ---------------------AATAGCAG--CACACGCAAGCGAATTCC-------CATGCAGCACACCTGAG-----------------------------------------------
ananassae ---------------------CATAGCAT--CGCACGCAAACGCATTCC-------CATGCAGTCCACCTGAG-----------------------------------------------
pseudoobscura ---------------------CATAGCAT--CACACGCAAGCGAATTCCCATGCAACATGCAACACACCTGAG-----------------------------------------------
persimilis ---------------------CATAGCAT--CACACGCAAGCGAATTCCCATGCAACATGCAACACACCTGAG-----------------------------------------------
virilis -TATGTAGGCAT---------CATAACAT--CACACGCAAACGCATTCC-------CATGCTGCACACCTGAGAAACCTAAGTTGACTGACTGACTGACGCTGGTGCTCGGTGGTGG---
mojavensis -TGCATCGG------------AATAACAT--CACACGCAAGCACATTCC-------CATGCTGCACACCTGAGAGACCAGAG---------AGACGGACA-----ACTCGCTGGTGGTGG
grimshawi ATATATAGGAATATATTTTGGAATAACATCACACACGCAAGCAAATTCC-------CATGCTGCACACCTGCGGGGGTGTGT---------AGGGTGGCA---------GCAGGGGG---
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ----------------------------TTC---CAATT------------------------AA------------CCACC--------C------------------CCTCC------
simulans ----------------------------TTC---CAATT------------------------AA------------CCACC--------C------------------CCTAC------
sechellia ----------------------------TTC---CAATT------------------------AA------------CCACC--------C------------------CCTAC------
yakuba ----------------------------TTC---CAATT------------------------AA------------CCACC--------C------------------CCTCC------
erecta ----------------------------TTC---CAATT------------------------AA------------ACACC--------C------------------CCTAC------
ananassae ----------------------------TTC---CAATT------------------------AAGAGTGGGTGAAGCCACCCTCAAAAAC------------------CTTACAATTTT
pseudoobscura -----------------------GCCAAGTC---CGATTCCCGGTCAGTCCTACAGAGAGGCAAA------------CCACC--------C------------------CCAACAGCACC
persimilis -----------------------GCCAAGTC---CGATTCCCGGTCAGTCCTACAGAGAGGCAAA------------CCACC--------CCCAACAGCACCAACAGCACCAACAGCACC
virilis GTGGGTGTCCAGGACACATGCTCATCGCACC---CAATC----------TAGACACCAAGAGGAA------------CTACC--------C------------------TCAGC------
mojavensis GTGGGTGTCCACGACACATGCTCATCGCACC---CAATC----------TAAGCACCATCAACAA------------CTACC--------C------------------TCGGC------
grimshawi GAGGGTGT---------------GTTGAATCTAACAAGC----------AGACAACAAGCCAAAA------------CCACC--------C------------------TCAGC------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ----------GATTCA-----------GCA-TCATC-------------C-----------AGGGGTTGACTAGTCCAATTAGAACCCCTGGACAT---------TG---------CAAC
simulans ----------GCGGCA-----------GCA-TCATC-------------C-----------AGGGGTTGATTAGTCCAATTAAAACCCCTGGACAT---------TG---------CAAC
sechellia ----------GGGGCA-----------GCA-TCATC-------------C-----------AGGGGTTGACTAGTCCAATTAGAACCCCTGGACAT---------TG---------CAAC
yakuba ----------TCAGCATCATCCAAAGGGCA-TCATC-------------C-----------AGGGGTTGACTAGTCCAATTAGAACCCCTGGCCAC---------TGCAACTCATTCAAC
erecta ----------AGGGCA-----------GCA-TCATC-------------C-----------AGGGGTTGACTAGTCCAATTAGAACCCCTGCCGAA---------GCCAG------CAAC
ananassae ATAAACA-AAGTGACA-----------GCA-TCATCATCGAAAAGCCGTC-----------GGGGGTTGATTAGTCCAATTAGAA----TGAGGAC---------TA---------CAAC
pseudoobscura AACAGCACCAACAGCA-----------GCA-TCATC-------------CTACTACAA-CAAGGGGTTG-CTATTCCAATTAGAGTCC-----------------TG---------CTAC
persimilis AACAGCACCAACAGCA-----------GCA-TCATC-------------CTACTACAA-CAAGGGGTTG-CTATTCCAATTAGAGTCC-----------------TG---------CTAC
virilis ------------ATCA-----------GCAGCCAGT-----------GGC-----CACTCGAGGGGTTG-CTATTCTAATTAGACCCTTTGCCCTT---------TT------------A
mojavensis ------------AACA-----------GCA-TCAGT-------------C-----CACTCGAGGGGTTG-CTATTCTAATTAGACCCTTTTCATTTTATTATTTGTT------------A
grimshawi ------------ATCA--------------------------------------------GAGGGGTTG-GCATTCTAATTAGACCCTTTTTGATG---------TT------------G
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CCC--TGG-------CGAC--TGTTGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTCT-ATCGT
simulans CCC--TGC-------CGAC--TGTTGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTCT-ATCAT
sechellia CCC--TGC-------CGAC--TGTTGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTCT-ATCGT
yakuba CCC--TGGACTCAGACGAC-----TGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTCT-ACCGT
erecta CCC--TGG-------CGAC-----TGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTAT-ATCGT
ananassae CCC------------CGAG--ATGTGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGAAATACGAATCGAA-----ATATAATTGCGCCCTTCAAGTGTCT-ATCAT
pseudoobscura CCT--CG--------CGAT--AGCTGGTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTTAAGTGTCT-ATCAT
persimilis CCT--CG--------TGAT--AGCTGGTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTTAAGTGTCT-ATCAT
virilis TTT--TG--------TTGC--TGTTGCTGCTATCATCGC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATATGAATCGAA---ATATATAATTGCTCTTTTTAAGTGTCTTGTCAT
mojavensis TTTGGTG--------TTGC--TGTTGTTGCTATCATCGC-AAGCGTTTTATTGATCAAGTTACGCATCCGTAATATGAATCGAA---ATATATAATTGCTCTTTTTAAATGTCTCGTCAT
grimshawi CTG--TG--------TTGCAGTGTTGCTGCTATCATCACTGGGCATTTTATTGATCACGTTACGCATCCGTAATATGAATCGAACATGTATATAATTGCTCACTTTAAGTGACT-GTCAT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ATATC-AA-ATGAA---TTGCATTTGCA-----TCTCCGCCC-------TTCTGCATTCGAGTCCGTTCGAGC--AGA---------------------------------GAGCTGTTC
simulans ATATC-AA-ATGAA---TTGCATTTGCA-----TCTCCGCCC-------TTCTGCATTCGAGTCCGTTCGAGC--AGA---------------------------------GAGCTGTTC
sechellia ATATC-AA-ATGAA---TTGCATTTGCA-----TCTCCGCCC-------TTCTGCAGTCGAGTCCGTTCGAGC--GGA---------------------------------GAGCTGTTC
yakuba ATATC-AA-ATGAA---TTGCATTTGCA-----TCTCCGCCCTTCCACATTCTACATTCGAGGCCGTTCGAGCTGAGA---------------------------------GAGCTGTTC
erecta ATATCAAA-ATGAA---TTGCATTTGCA-----TCTCCGCCC-------TTCTACAATCGAGTCCGTTCGAGC--AGA---------------------------------GAGCTGTTC
ananassae ATATC-AA-ATGAA---TTGCATTTGCA-----TCT---CCC-------TGCTGTGATGAATACGTTTCCATA--GTC---------------------------------GGACTGTTC
pseudoobscura ATATC-AACATGAATACTCGCACTCGCACTCGTACTCGTACT-------CCCAGCATTTG---CATTTCGAAC--ACATCACATCACCCTCTCTGAATGTGCCTCTGGGCTGATCTGTTC
persimilis ATATC-AACATGAATACTCGCACTCGC------ACTCGTACT-------CCCAGCATTTG---CATTTCGAAC--ACATCGCATCACCCTCTCTGAATGTGCCTCTGGGCTGATCTGTTC
virilis ATATC-AA-TGCGT---GCGCATTTGCA-----TTCA--------------------------------ACGC--TCA---------------------------------GG----TTC
mojavensis CTATC-AA-TGCGT---ACGCATTGGCA-----TTTG----C-------ATTTACATTTG--CGGACTCGAGC--TCG---------------------------------AG----TTC
grimshawi CTATC-AA-CTCAT---TTGCATTTGCA-----TTTA----C-------ATTTG---TCG--GCGTCTCTAGT--TCT---------------------------------GT----TTC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CCACGT----TCG------AG------------------GTCCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCG-TTGGTGCGTA
simulans CCACGT----TCG------AG------------------GTCCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCG-TTGGTGCGTA
sechellia CCACGT----TCG------GG------------------GTCCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCG-TTGGTGCGTA
yakuba CCACGT----TTG------AG------------------GTTCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCGTTTGGTGCGTA
erecta CCACGT----TCG------AG------------------GTCCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCG-TTGGTGCGTA
ananassae CCACGT----TTG------AGTGTGAGTTTTAGGAGGTCGTCGAGG---------------------ATC--AGGATCGT-ATGTCCT---------------TAGGCGTTTGGTGCGTA
pseudoobscura CCACGTATTCACG------GG------------------GTTGCGGAGTTGCGAGGTTGAGGACGGGATT--GGCCTCGT-CAGGCCT---------------TAGGCG-TTGGGTCTTA
persimilis CCACGTATTCACG------GG------------------GTTGCGG--------GGTTGAGGACGGGATT--GGCCTCGT-CAGGCCT---------------TAGGCG-TTGGGTCTTA
virilis CCACAG----CAGCGC---CG------------------GCGAGGG---------------------ATTG-ACAACCCC-TCGGCCAGGGATCGGGCCGCGCTAGGCGTTCGAGTTTTA
mojavensis TCACAG----CAGCAACAGCA------------------GCGAGGG---------------------ACTG-ACAACCCC-TCGGTCA------AGGCTGGGCTAGGCGTTCGAGTTTTA
grimshawi CCACAG----CAG------GA------------------GAGACGG---------------------ATTGAACGACCCCGTCG--CA--------------------GTTTGAGTTTAA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ATCGCACCAGACTTACAGGATCTTGCTTAACA-TT--ATTAAGTACTCGC--CCGATGCTGGGACCTC-----GCACAATGTC-------------------------T-
simulans ATCGCACCAGACTTACAGGATCTTGCTTAACA-TT--ATTAAGTACTCGC--CCGATGCTGGGACCTC-----GCACAATGTC-------------------------T-
sechellia ATCGCACCAGACTTACAGGATCTTGCTTAATA-TT--ATTAAGTACTCGC--CCGATGCTGGGACCTC-----GCACAATGTC-------------------------T-
yakuba ATCGCACCAGACTTACAGGATCTTGCTTAACA-TT--ATTAAGTACTCGC--CCGTTGCAAGGACCTC-----GCACAATGTC-------------------------C-
erecta ATCGCACCAGACTTACAGGATCTTGCTTAACA-TT--ATTAAGTACTCGT--CCGTTGCTGGGACCTC-----GTACAATGTC-------------------------T-
ananassae ATCGCACCAGACTTGCGGGATCTTGCTTAACATTT--ATTAAGTACTCTT--GGGATATTAAGTACTCTCAATGTGCAATGTC-------------------------TG
pseudoobscura ATCGCACCAGACTTGCGGGATCTTGCTTAACA-TTTCGTTAAGTACTCGA--ATG-------GCACTC-----GTGCAATGTT-------------------------C-
persimilis ATCGCACCAGACTTGCGGGATCTTGCTTAACA-TTTCGTTAAGTACTCGA--ATG-------GCACTC-----GTGCAATGTT-------------------------C-
virilis ATCGCACCAGACTTACGGGATCTTGCTTAACATTT--ATTAAGTACAATATGTTTTTCGCGTGAATTC------TATAATGCT-GGGCATTTGCTTCTGGCATTGATCC-
mojavensis ATCGCACCAGACTTACGGGATCTTGCTTAACA-TT--ATAAAGTACAATA--TTTTTCGCCCGAATTC------TATAATGCTAGAGCATTTGCCTTGGGCGTTGATCC-
grimshawi ATCGCACCAGACTTACGGGACCTTGCTTAACA-TT--ACTAAGTACAATA--TTTTTCGCATGAATTT------TGTAAATCT-------------------------C-
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBB
cau