melanogaster CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGCTTGCTATCTCGCGCGCTACACAGACGAGGAGACGAAAAATAACGCC--------------------GGACGCTG----------
simulans CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGCTTGCTTTCTCGCGCGCTACACAGACGAGGAGACGAAAAATAACGCC--------------------GGACGCTG----------
sechellia CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGCTTGCTATCTCGCGCGCTACACAGAC-AGGAGACGAAAAATAACGCC--------------------GGACGCTG----------
yakuba CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGCTTGCTATCTCGCGCGTTACACAGACGAGGAGACGAAAAA-ACCGCC--------------------GGATGCTGATCCTGGTTG
erecta CTTTACGTATTTTAGTTATCGAG-TTCATCTTCTGCTTGCTATCTCGCGCGCTACACAGACGAGGAGACGAAAAATAACGCC--------------------GGACGCTG----------
ananassae CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGGTT-TTGTTTTTTTCGCAACAAGAACGCGGATGCGAATGC----------------------------GGCGGTG----------
pseudoobscura GTTTACGTATTTTAGTTATCGAG-TTTATCTTTCGCTT------TCTCGCGCTACTCAGACGAGGAGACGAAAAAGAACGCC--------------------GAACGGCG----------
persimilis GTTTACGTATTTTAGTTATCGAG-TTTATCTTTCGCTT------TCTCGCGCTACTCAGACGAGGAGACGAAAAAGAACGCC--------------------GAACGGCG----------
virilis CTTTACGTATTTGAGTTATCAAC-TTTGT-------TT--TGTTTTTCGTATTACACAG---AAGAGACGAAAAA--ACGCCAAACTCAAGGCATCAAGCGACGACGACG----------
mojavensis CTTTACGTATTTGAGTTATCAAC-TTTGT--TTTGCTT--TGCTTTTCGCATTACACAG---AAGAGACG-AAAA--ACGCCAAACTCAAGGCATCAAGCGACGACGACG----------
grimshawi CATTACGTATTTATGTTATCAACTTTTGT--TTTGTTT--TGTTTTC--TTTTACACAG---AAGAGACGAAAAG--ACGCCAAACTATAGACATCAAGCGACGACGATG----------
Summary BBBBBBBMMMMMMMMBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --------------------ATCCGGG-CGATGGC---------------TGCGGTGGTGGTGCTAGTGGTGCGGCTGGTG--GAAGAT--------TGGCTCGTTG-----GCT-----
simulans --------------------ATCCTGG-CGGTGGC---------------TGCGGTGGTGGTGCTAGTGGTGCGGCTGGTG--GAAGAT--------TGGCTCGTTG-----GCT-----
sechellia --------------------ATCCTGG-CGGTGGC---------------TACGGTGGTGATGCTAGTGGTGCGGCTGGTG--GAAGAT--------TGGCTCGTTG-----GCT-----
yakuba ATCAGGTTTGATCCTGGCTCATCCTGG-CGGTGGC---------------TGCGGTGGTGGTGCTAGTGGTGCGGCTGGTG--GAAGAG--------TGGCTCGTTG-----GCT-----
erecta --------------------ATCCTGG-CGGTGGC---------------TGCGGTGGTGGTGCTAGTGGTGCGGTTGGTG--GAAGAA--------TGGCTCGTTG-----GCT-----
ananassae --------------------ATGGTGGTTGGTGGT---------------GGTGCTAGTGGAGCTAGTGGTGCGGCTGGTG--GAAGATTGGCTCGATGGCTCGTTG-----GCT-----
pseudoobscura ------------------------------------------------------GTGGTGGC----GTGGTGCTAGTGGCG--GAAGAT--------TGGCT------------------
persimilis --------------------GTGGTGG-CG-TGGT---------------GGC-GTGGTGGC----GTGGTGCTAGTGGCG--GAAGAT--------TGGCT------------------
virilis --------------------ACGACGA-CGACGACGACGACGATGACATTGACGATGACGATGACGATGACGATTACCGTA--GATGGT--------AGGTGGATAGTAGACGCTAGTGA
mojavensis --------------------ATGGCGA-CGATGGC---------------GACGATGGCGATGGCGATGAC----------------AT--------AGGTTGTTAG-GGGTGGTAATGA
grimshawi --------------------ATGATGA-CATTGTCGATGACGATGACGATGACGATGACGATTACAATGGCGATGGCGATGACGGTGGT--------TGTTGGATTG-TGGCGCTGGTGA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ------------------CGGCTGGG---CGA-----TGGGTGGTTGTCAGCTTAGGAGTTGACTTTGCTGACCGCCTTTAGCAGGTCGTGATTGCTCTTGTCCAGGGCGCTCATCATGC
simulans ------------------CGGCTGGG---CGA-----TGGGTTGTTATCAGCTTAAGAGTTGACCTTGCTGACCGCCTTTAGCAGGTCGTGATTGCTCTTGTCTAGGGCGCTCATCATGC
sechellia ------------------CGGCTGGG---CGA-----TGGGTTGTTATCAGCTTAAGAGTTGACCTTGCTGACCGCCTTTAGCAGGTCGTGATTGCTCTTGTCCAGGGCGCTCATCATGC
yakuba ------------------CGGCTGGG---CGA-----TGGGTGGCTATCAGCTTAGGAGTTGACCTTGCTGACCGCCTTTAGCAGGTCGTGATTGCTCTTGTCCAGGGCGCTCATCATGC
erecta ------------------CGGCTGGG---CGA-----TGGGTGGCTATCAGCTTAAGAGTTGACCTTGCTGACCGCCTTTAGCAGGTCGTGGTTGCTCTTGTCCAGGGCGCTCATCATGC
ananassae ------------------CGGCTGGGGCTCGGCTTTCCGGGGGGCCAGCTGCTTAGGAGTTAACCTTGCTGACCGCCTTCAGCAGGTCGTGATTGCTCTTGTCCAGGGCACTCATCATGC
pseudoobscura ------------------------GG---CGG-----GGG--------CAGCTTACGAGTTGACTTTACTGACAGCCTTCAGCAGATCGTGGTTGCTCTTGTCCAGGGCACTCATCATTC
persimilis ------------------------GG---CGG-----GTG--------CAGCTTACGAGTTGACTTTACTGACAGCCTTCAGCAGATCGTGGTTGCTCTTGTCCAGGGCACTCATCATTC
virilis TAGTAGCGGTAATGATGATAGTTGAG---AGA-----ATATCCACGCAACATTTAGGAGTTGACTTTACTAACCGCCTTGAGAAGATCGTGATTGTTCTTATCAAGGGCGCTCATCATTC
mojavensis CGGTAGCGGTA---ATGATAGTTGAA---GGG-----TGCTCCAGTTGCCGTTTAGGAGTTGACCTTACTGACCGCCTTGAGAAGATCGTGATTGCTCTTGTCAAGGGCGCTCATCATTC
grimshawi CAATGACGGTAATGATTGTGGCTGAC---TGA-----CGATCGGCGGCCCATTTAGGAGTTGACCTTACTGACCGCTTTGAGTAGGTCGTGATTGCTCTTGTCGAGGGCGCTCATCATAC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CCAGATTGCCGCCCAAGCCGCCACCGATGCCCGGCCCGATGC---------CGCCCACTCCG------ACGCCCACGCCCATGCCAAGGCCGAGCTTGAGATCGTTTTGACCTACCACCG
simulans CTAGATTGCCCCCCAAGCCGCCACCGATGCCCGGCCCGATGC---------CGCCCACACCT------ACGCCCACGCCCATGCCAAGGCCAAGCTTGAGATCGTTTTGACCTACCACCG
sechellia CCAGATTGCCCCCCAAGCCGCCACCGATGCCCGGCCCGATGC---------CGCCCACTCCG------ACGCCCACGCCCATGCCAAGGCCAAGCTTGAGATCGTTTTGACCTACCACCG
yakuba CCAGGTTGCCCCCCAATCCGCCACCAATGCCCGGCCCGATGC---------CGCCCACTCCG------ACGCCCACGCCCATGCCAAGGCCGAGCTTGAGATCGTTTTGACCTACCACGG
erecta CCAGATTGCCCCCCAAGCCGCCACCGATGCCCGGGCCGATGC---------CGCCCACTCCGACGCCCACGCCCACGCCCATGCCAAGGCCGAGCTTGAGATCGTTTTGACCTACCACGG
ananassae CCAGGTTGCCACCCAGGCCGCCACCGATGCCGGGGCCAATACCACCGCCCACGCCCACTCCC------ACGCCGACGCCCATTCCCAGGCCGAGCTTGAGATCGTTCTGACCCACCACGG
pseudoobscura CTAGGTTACCGCCGAGCCCGCCACCAAGACCGGGACCGATTC---------CG---GCGCCG------ACACCCACGCCCATGCCCAGGCCGAGCTTGAGATCGTTCTGGCCCACGACGG
persimilis CTAGGTTACCGCCGAGCCCGCCACCAAGACCGGGACCGATTC---------CG---GCGCCG------ACACCCACGCCCATGCCCAGGCCGAGCTTGAGATCGTTCTGGCCCACGACGG
virilis CAAGATTGCCACCAAGGCCAGCGCCAAGACCTGGTCCAATACCAGCTCCGACTCCAACGCCC------ACTCCGACACCCATGCCCAATCCAAGCTTGAGATCGTTTTGACCGACAACGG
mojavensis CCAGATTTCCGCCAAGGCCGGCTCCCAGTCCCGGCCCGAGGCCAGACCCAACGCCAACACCG------ACTCCGACGCCCATGCCCAAGCCAAGTTTGAGATCGTTCTGACCGACAACGG
grimshawi CCAGATTGCCACCAAGGCCAGCTCCCAGGCCGGGACCAATGCCAGCGCCGACACCGACGCCA------ACGCCAACACCCATGCCCAATCCAAGCTTGAGATCGTTTTGACCGACAACGG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBB
melanogaster AGTGGTGCAAGTGGCCTGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGTTGCTGCTGTTGGTGCTGTTGCTGCTGCTGCTGTTGC---------TGCTGCTGTTGCTGTT
simulans AGTGGTGCAAGTGGCCTGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGTTGCTGCTGCTGGTGCTGTTGCTGCTGCTGTTGTTGC---------TGCTGCTGTTGCTGTT
sechellia AGTGGTGCAAGTGGCCTGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGTTGCTGCTGCTGGTGCTGTTGCTGCTGCTGCTGTTGC---------TGCTGCTGTTGCTGTT
yakuba AGTGGTGCAAGTGGCCCGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGCTGCTGCTGCTGGTGCTGTTGCTGCTGCTGCTGTTGC---------TGTTGCTGCTGCTGTT
erecta AGTGGTGCAAGTGGCCCGGGTTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGCTGTTGCTGCTGCTGGTGCTGTTGCTGCTGCTGCTGTTGC---------TGCTGCTGCTGCTGTT
ananassae AGTGGTGCAAGTGGCCCGGATTGTGCGAGATGATGGAGTGGTGGTCCTGGGGCTGTTGCTGCTGCTGCTGGTGCTGTTGCTGTTGTTGTTGCTGC---------TGCTGTTGTTGCTGTT
pseudoobscura AGTGGTGCAAATGGCCTGGATTGTGTGAGATGATCGAGTGGTGGTCCTGCTGCTGTTGCTGCTGCTGCTGGTGCTGCTGTTGCTGTTGCTGCTGC---------TGCTGCTGT-------
persimilis AGTGGTGCAAATGGCCTGGATTGTGTGAGATGATCGAGTGGTGGTCCTGCTGCTGTTGCTGCTGCTGCTGGTGCTGCTGTTGCTGTTGCTGCTGC---------TGCTGCTGT-------
virilis AGTGGTGCAAGTGGCCCGGATTGTGTGTAATAATCGAATGATGATCCTGCTGCTGTTGTTGCTGTTGCTGGTGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCT
mojavensis AGTGGTGCAAGTGCCCCGGATTGTGTGAAATGATCGAGTGATGATCCTGCTGCTGTTGCTGCTGCTGCTGGTGCTGCTGTTGCTGCTGCTGCTGC---------TGTTGCTGCTGCTGTT
grimshawi AGTGGTGCAAGTGGCCCGGATTGTGTGTAATGATCGAGTGATGATCTTGTTGCTGCTGTTGCTGGTGCTGCTGTTGTTGCTGTTGCTGTTGCTGC---------TGCTGTTGCTGCTGCT
Summary BBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GCTGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATTTTCTCCTGCTCCTCTCGATCGCGTCGCGCCTT-AAAGGTAAATTAAA-----AAC
simulans GCTGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATTTTCTCCTGCTCCTCGCGATCGCGTCGCGCCTT-AAAGGTAAATT-----------
sechellia GCTGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATTTTCTCCTGCTCCTCGCGATCGCGTCGCGCCTT-AAAGGTAAATTAAA-----AAC
yakuba GCTGCTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATCTTCTCCTGCTCCTCGCGATCGCGTCGCGCCTT-AAAGTAATA-AAAA-----AGG
erecta GCTGCTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATTTTCTCCTGCTCCTCGCGATCGCGTCGCGCCTT-CATCGAATATAAAA-----AAG
ananassae GCTGCTGCTGTTGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATCTTCTCCTGCTCCTCGCGATCACGTCGCGCCTTCGAAAAGAAATCAAA-----AA-
pseudoobscura --TGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGAGCCTTCATCTTCTCCTGCTCCTCGCGGTCGCGTCGGGCCTT-AAATGGAAAGGAAACACACAAG
persimilis --TGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGAGCCTTCATCTTCTCCTGCTCCTCGCGGTCGCGTCGGGCCTT-AAATGGAAACGAAA-ACACAAG
virilis GCTGTTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATAGTCTCCTGAGCCTTCATTTTCTCTTGTTCCTCTCGGTCGCGGCGTGCCTA-AAACGTGAATATGA-----AAA
mojavensis GCTGTTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATAGTTTCCTGAGCCTTCATTTTCTCCTGCTCCTCGCGATCACGGCGTGCCTG-CAATGTGGAGATGA-----CGA
grimshawi GCTGTTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGAGCCTTCATTTTCTCTTGCTCCTCACGATCGCGTCGTGCCTA-ACAAAGGAACATGA-----AAA
Summary BBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBB
melanogaster ----------GGAAAGCAAGT------------------------------------T-------AGTT----------------------------------------AAGAGTTTAAG
simulans -------------AGTTAAGT------------------------------------T-------AGTT----------------------------------------AAGAGCTTAAG
sechellia ----------GGAAAGCAAGT------------------------------------T-------AGTT----------------------------------------AAGAGCTTAA-
yakuba ----------GGAAACCAAGT------------------------------------T-------AGTA----------------------------------------AAGAGTTAAGA
erecta ----------GGAACGCAAGT------------------------------------TAGTGGGGAGTG----------------------------------------AGGAGTTGAGG
ananassae ------------AACACCAAT------------------------------------C-------AGTT-------------------------------------------AGTTTAAT
pseudoobscura ----------GAAAAGGGTTT------------------------------------T-------AGTTTTCCGCTCGGAAGTCG--------------TTGCC-AAATGAGAGCTCTGG
persimilis ----------GAAAAGGGTTT------------------------------------T-------AGCTTTCCGCTCGAAGGTCGGTCTCTAGCC--CACTGCCAAAATGAGAGCTCTGG
virilis GAAGACGGGAGAAATGCATATTAGGCAACTATCTAGA--------------------C-------ACAT----------TGCTGGCGACCTATTTAAAAAGTCCGTCGCAATCGTT----
mojavensis TGAGGCGCATTAAAGG-ATAT------ACTATAT-----------------------C-------AATT----------TAATAGGAGCCAATAT--------CGCGATGATCGATCAAG
grimshawi -GATTCAAGACAAAAGCACATTAAACTCCTGTCCACAGTAGGTGTTCTTCAATTCCTC-------AATT----------CTCTGATGACTCATTTTAAGATGCGATAGCTATCGCT----
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GT--------GCTGCGG---AAGGACCAGCTCACCTGTTCATTTATTTCCTTGACGGCTCGTAACTCCTTCTTCAGCTTCATGCGACGGTTCTGAAACCAGATCTTGATCTGTCGCTCGG
simulans GT--------GCTGCGG---CAGGATCAGCTCACCTGTTCATTTATTTCCTTGACGGCTCGCAACTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTGATCTGTCGCTCGG
sechellia GT--------GCTGCGG---CAGGATCAGCTCACCTGTTCATTTATTTCCTTGACGGCTCGCAACTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTGATCTGTCGCTCGG
yakuba GTTAGGT--CGCTTTGC---GAGGACCAACTCACCTGTTCATTTATCTCCTTGACGGCTCGCAACTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTGATCTGCCGCTCGG
erecta GTCAAGC--CGCCCCGG---GAGGACCAACTCACCTGTTCATTTATCTCCTTGACGGCTCGCAACTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTGATCTGCCGCTCGG
ananassae TTTATCCAAATACCTGG---AAGGGCGGACTCACCTGTTCGTTTATTTCCTTGACGGCGCGCAGCTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTTATCTGTCGCTCGG
pseudoobscura AG--------AATCCTG---GGAGATCGACTCACCTGCTCGTTGATCTCCTTGACGGCGCGCAGCTCTTTCTTCAACTTCATGCGACGGTTCTGGAACCAGATCTTGATCTGGCGCTCGG
persimilis AG--------AATCCTG---GGGGATCGACTCACCTGCTCGTTGATCTCCTTGACAGCGCGCAGCTCTTTCTTCAACTTCATGCGACGGTTCTGGAACCAGATCTTGATCTGGCGCTCGG
virilis TC--------GACATGC---TTCCGATAACTTACCTGTTCGTTGATCTCTTTGACCGCGCGCAGCTCCTTCTTTAATTTCATGCGTCGATTCTGAAACCAGATCTTGATCTGTCGCTCGG
mojavensis TC--------GACTTGC---TCCGGTCAACTTACCTGTTCGTTAATCTCTTTGACAGCGCGCAGCTGTTTTTTGCTTTTCATGCGACGATTCTGGAACCAGATTTTCACTTGTCTTTCGG
grimshawi CC--------GTTATGCAAATCAGGTCAACTTACCTGTTCGTTGATCTCTTTGACCGCACGCAACTCCTTCTTCAACTTCATGCGCCGGTTCTGGAACCAGATTTTGATCTGGCGCTCAG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TCAGGCAGAGGGCATGTGCGATCTCGATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGGCGACCGCGCCTTC
simulans TCAGGCAGAGGGCATGTGCGATCTCGATACGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGACGACCGCGCCTTC
sechellia TCAGGCAGAGGGCATGTGCGATCTCGATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGCCGACCGCGCCTTC
yakuba TCAGGCAGAGGGCGTGTGCTATCTCAATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGGCGACCGCGCCTTC
erecta TCAGGCAGAGGGCATGTGCGATCTCAATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGGCGACCGCGCCTTC
ananassae TCAGGCAGAGAGCGTGGGCTATCTCGATGCGCCGCCGCCGAGTCAAGTAGTGGTTGAAGTGGAACTCCTTCTCCAGCTCGAGGGTCTGAAAGCGAGTGTAGGTCTGGCGGCCGCGTCTTC
pseudoobscura TCAGGCAGAGCGCGTGGGCGATCTCGATGCGGCGTCGCCGCGTCAAGTAGTGGTTGAAGTGGAACTCCTTCTCGAGCTCCAGCGTCTGGAAGCGCGTGTAGGTCTGCCTGCCGCGGCGGC
persimilis TCAGGCAGAGCGCGTGGGCGATCTCGATGCGGCGTCGCCGCGTCAAGTAGTGGTTGAAGTGAAACTCCTTCTCGAGCTCCAGCGTCTGGAAGCGCGTGTAGGTCTGCCTGCCGCGGCGGC
virilis TTAGGCAGAGCGCGTGTGCAATCTCTATGCGTCGTCGCCGCGTCAAGTAGTGGTTGAAGTGGAACTCTTTTTCGAGCTCCAGCGTCTGGAAGCGAGTATAAGTCTGGCGGCCGCGACGTC
mojavensis TAAGCTGCAGACGTTGAGAGATCCCGATGCGACGAGGTCTACCCAGATATTTGTTCTCATTGAACTCGCGCTCCAGCTCGAGCAGTTGGTGACTTGTGAA-----GGCGG-TGCGAGAGC
grimshawi TCAGGCAGAGGGCGTGCGCAATCTCTATGCGTCGTCGCCGCGTCAAGTAGTGGTTGAAGTGGAACTCCTTCTCCAGCTCCAATGTCTGGAAGCGGGTGTAAGTCTGGCGGCCGCGGCGAC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GTGGACAGCCGTTGGGGCCT----GCGG---AGGAGAA--AACGGAGAAAGTTGCGTCAG--ATGTTTGC------------AACGATGTT--------------TAAGAAGATGTTTT-
simulans GGGGACAACCGTTGGGGCCT----GAGG---AGAAGAA--AACGGAGAAAGTCACGTCAG--ATGCTTGA------------AATGATGTT--------------TAAGAAGATGTTTT-
sechellia GGGGACAACCGTTGGGGCCT----GAGG---AGGAGAA--AACGGAGAAAGTCACGTCAG--ATGCTTGA------------AACTATGTT--------------TAAGAAGATGTTTT-
yakuba GGGGACAGCCGTTGGGGCCT----GCGG---AGGAGAA--AACGGAGAAAGTCGCGTCAG--ATGGTGGC------------AACGATGTT--------------TAAGAAGATGTTTT-
erecta GGGGACAGCCGTTGGGGCCT----GCGG---AGGAGAA--AACGGAGAAAGTCGCGTCAG--ATGCTTGC------------AACGATGTT--------------TAAGAAGACGCTTT-
ananassae TGGGGCATCCGTTGGGGCCT----GCAA---AAAGAAACGAGAGGAGAAAGTCACGTCAG--ATGC------------------CGTCGTT--------------GATGATGATGTTGT-
pseudoobscura GAGGGCATCCGTTGGGGCCTGTGGGCGG---GAGAAAG--AACAAAGAAAGTCACGTCAG--TCACGCACTCA---------CACACTGTCTGGCTGTGCATTGGTATGATAATGTTGTT
persimilis GAGGGCATCCGTTGGGGCCTGTGGGCGG---GAGAAAG--AACAAAGAAAGTCACGTCAG--TCACGCACT-----------CACACTGTCTGGCTGTGCATTGGTATGATAATGTTGTT
virilis GCGGGCATCCGTTGGGCCCT----GCAAACGAGAGGAG--AACAAAGAAATTCGCGTTAGTCACGATTGTCACGCACACAGCTCAAGTGTT---------------GCTATAGTGCTGG-
mojavensis GCTTGCACTTGGAGGCGACT----GGAGGGCAGTGGAA--CTCGGAGGAAGTCGCGTTAGTCACGATTG-------------TCAAATGTT---------------------GTGCTAC-
grimshawi GTGGGCATCCGTTGGGCCCT----GCAAACCACAACAA--AAAAAATAAAGCAGCGTTAGTCACGATTGTCACGCACACAGCTCAAGTGGTCGGTGC--------CGGTCTGATTCTGG-
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ---------------TGCC--TTTTTCGGCA--------ACGCCT---AATGAGCTGCTAAGACGGTGTCAGACGGTCGAAAATGGTACTTTGGCCAGCT----------GCAA---CAC
simulans ---------------TGCC--TTTTTCGGCA--------ACGCCT---AATGAGCTGCTAAGGCGGTGTCAGACGGTCGAAAATGGTACTTTGGCCAGCT----------GCAA---CAC
sechellia ---------------TGCC--TTTTTCGGCA--------ACGCCT---AATGAGCTGCTAAGGCGGTGTCAGACGGTCGAAAATGGTACTTTGTCCAGCT----------GCAA---CAC
yakuba ---------------GGCC--TCTTTCGCCA--------GCGCCT---AATGACCTGCTAAGACGGTGTCAGACGGTCGCAAATGGTACTTTGGCCAGCT----------GCAA---CAC
erecta ---------------GGCC--TTTTTCGCCA--------ACGCCT---AATGACCTGCTGAGACGGTGTCGGACGGTCGAAAATGGCACTTGGGCCAGCT----------GCAG---CAC
ananassae ---------------TGCCGTTTTTTTGGCA--------GCGCTT---AATGAGCTGCAAAGACACTGGCAGACAGTCGAAAATGGAACTCTGGCTCGCCTTAATGGCCAGCAA---CAC
pseudoobscura CGGCTTCTTTGGGGCTGCC--TTTTCTGGCA--------ACTCTT---AACGAGTCGC--AGGCGCTGTCAGACAGGCGGGAATGGAACTCTGCCTCGCCGTAACGGG------------
persimilis CGGCTTCTTTGGGGCTGCC--TTTTCTGGCA--------ACTCTT---AACGAGTCGC--AGACGCTGTCAGACAGGCGGGAATGGAACTCTGCCTCGGCGTAACGGGCTGCAA---CAC
virilis ---------------TTCC--GTTTTTTGAAA-------ACTCGT---AACGAGCTGCGAAGATGCTGTCAGACTGCCAAAAACGGATTTTCGCCTCGCCTTA--TGGTTGCAA---CAC
mojavensis ---------------TCGA--ATACGCCAAAACAGTGAGACACGTGTGAGCGAGGCGT---GGCTCTGTGGGGCTGGCGA---------TGCG-------------GGGAACAA---CAG
grimshawi ---------------TTCT--GTTTTTGGAC--------ACTCTT---AACGAGCTGCGAAGAAGATGTCGCCCGGCCACAAATGGAATCTCGCCTTATGTGAACGGGTTTCAGCCTCAC
Summary BBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ATGTCAGGCGTCGACAC--ATGATTTG---------------TGCTGGGGTATGGGGGT-----TTGGAGGT------------------TGGGGG-----------------CGTACAT
simulans ATGTCAGGCGTCGACAC--ATGATTTG---------------TGCTGGGGTATGGGGGC-----TTGGGG--------------------------------------------GTACTT
sechellia ATGTCAGGCGTCGACAC--ATGATTTG---------------TGCTGGGGTATGGGGGC-----TTGGGG--------------------------------------------GTACTT
yakuba ATGTCAGGCGTCGACAC--ATGATTTG---------------TGCTATGGGATGGGGGT-----TGGGGA--------------------TGGAGG-----------------GGTACTT
erecta ATGTCAGCCGTCGACAC--ATGATTTG---------------TGCTGTGGGATGGGGGT-----TTGGGGGT-----------------TTGGGAGTTCGGT-----------GGTTCTG
ananassae ATGTCAGGCGTCGCCCC--ATGATTTG---------------TGGCTGGAGTTGGGGGT-----CTGTGGATGCCG-----------GATTAGGAGAGTGGGAAGAGGGAAGAGACACT-
pseudoobscura ---------------------------------------------CTGGGTCTGTGGAT--------GGGATCCGG-----------GATGGGGAG------------------------
persimilis ATGTCACGCGTCGCCGC--ATGATTTT---------------TGCCTGGGTCTGTGGATGGGGATCGGGGATCCGG-----------GATGGGGAG------------------------
virilis ATGT--------------------------------------------------------------------------------------------------------------------
mojavensis ATTT---------------CTGATTTG------GATATTGCTCGCTTCGCGCCAAGAAG-----TCGCGAAAGGGTGGTGGGCGCGAGAGCAGG--------------------GGGCAT
grimshawi AT--CAGGCAATAAGGCGCTTAATTTGTGTGCAGCCATTAGCCACTTTGAACTCAAAAG-----CT------------------------CAGGTA-----------------AGAACTT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTCTGAGCTGCAC-------TGCGAATG------------T-CTGACTGCAAATTAC-----GGGAA------------------------------AA-----------ACAAACAGAT
simulans TTCTGAGCTGCAC-------TGCGAATG------------T-CTGACTGCAAATTAC-----GAGAA------------------------------AA-----------ACAAACAGAT
sechellia TTCTGAGCTGCAC-------TGCGAATG------------T-CTGACTGCAAATTAC-----GAGAA------------------------------AA-----------ACTAACAGAT
yakuba TTGGGAGCTGCAC-------TGCGAATG------------T-CTGACTGCAAATTAC-----GAGAA------------------------------AA-----------ACAAACAGAA
erecta TTCGGAGCTACAC-------TGCGAATG------------T-GGGACTGCAAATTGC-----GAGAA------------------------------AA-----------ACAAACAGAT
ananassae ------GGTGCAC-------TGCGAATG------------T-CTGGCTGCAAATTAC-----GAGCC------------------------------AA-----------ACAAACAG-T
pseudoobscura TTGGGAGCGGAGAGAG----AGAGAGTG------------CACTGGCTGGAAATCAA-----GAGCC------------------------------CA-----------ACAAACAGTT
persimilis TTGGGAGTTGGGAGCGGAGAGGAGATTG------------CACTGGCTGGAAATTAA-----GAGCC------------------------------AA-----------GCAAACAGTT
virilis --------TGCAC-------TGCGAATG--------------TCTGCTGCAAATTAC-----GAGCA------------------------------AA-----------ATAAATAATT
mojavensis GGCCATGCTGCAC-------AGCGAATA-----------TC-TCTGCTGTAAATGAC-----GAGCACAAA------------------------CAAA-----------ATAAATAATT
grimshawi TGCCAGATTGCAG-------CGCTAAAGAAAAAGGGGAAAT-GCGATCGAAAGCGATAACGGGAACAGAAAGTGAGTGCCCTGCATCATCTGCTGCGAATTACGAGGAAAATAAACAGTT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TGT-TTTA-----------ACAGAGAGAGAGAGAGAAGGGAGTGATCTGATGCTA----------GAGCTGACGTCAGCA----------------------------GCCGG-CGCCCC
simulans TGT-TTCA-----------------AAAGAGCGAGAAGGGAGTGATCTGATGCTA----------GACCTGACGTCAGCA----------------------------GCCGG-CGCCCC
sechellia TGT-TTCA-----------------AAAGAGCGAGAAGGGAGTGATCTGATGCTA----------GACCTGACGTCAGCA----------------------------GCCGG-AGCCCC
yakuba TGT-TGCA-----------------AAAGAGCAAGGAGGGAGTGATCTGATGCTA----------GACCTGACGTCAGCA----------------------------GCAGG-CGCCCC
erecta TGT-TCCA-----------------AAAGAGCGAGAAGGGAGTGATCTGATGCTA----------GACCTGACGTCAGCA----------------------------GCCGG-CGCCCC
ananassae TTT-TCCA-----------GCCACCAGTCACCAGCTACCCAGCAACCTG--GCTGGGAAAAGGGTGAGTTGACGTAAGCA----------------------------GGCGGTCGCCCC
pseudoobscura TGT-CTAACAATCATGCTGGAACACGGACTGGAAGGGTGGAGAGATCTGACGTCA----------GCGACAGAG-CAGCA----------------------------GCAGG-CGCCCC
persimilis TGT-CTAACAATCATGCTGGAACACGGACTGGAAGGGTGGAGAGATCTGACGTCA----------GCGACAGAG-CAGCA----------------------------GCAGG-CGCCCC
virilis TTT-CTAA---------------CCAGGC------------CAGCTCTGACGTCA---------------ACCGTCAACTGACAGTCGACAGCGCCACACAGCGCAAGGCGAATCGCGGC
mojavensis TCTGCTAT---------------CCAGGC------------CAGCTCTGACGTCA------------------GTCCACT----------------------------GCGAATCGCGGC
grimshawi CTC-CTAA---------------CCGGGC---------GAACGTCTCTTACGTCA------------------GTCGACA-----------GCGCCACACAGT-----GCGAGGCGCGGC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCAACTGCGGATTGGCATCGCACGCAGTGCGTGAAAGGGTGAAGCTACCAA
simulans AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCCACTGCGGATTGGCATCGCACGCAGTGCGTGGAAGGGTGAAGCTACCAA
sechellia AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCCACTGCGGATTGGCATCGCACGCAGTGCGTGGAAGGGTGAAGCTACCAA
yakuba AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCCGCTGCGGATTGGCATCGCACGCAGTGCGTGGAAGGGTGAAGCTACCAA
erecta AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCCGCTGCGGATTGGCATCGCACGCAGTGCGTGGAAGGGTGAAGCTGCCAA
ananassae AGGACACCGACTCCC-CGGG-----------GTCCATTCCGGA--------------------CCTGATTCCGCTGTGGAATCGCATCTCACACAGTGCATGGAAGGGTGAAGCA-----
pseudoobscura AGGACTTGGGCTCCC-CGGGAAGCA------GGCTGACCCAGC--------------------CCTGATTCCGCCTTGGATT------GCACGCAGTGCATGGAAGGGTGAAG-------
persimilis AGGACTTGGGCTCCC-CGGGAAGCA------GGCTGACCCTGC--------------------GCTGATTCCGCCTTGGATT------GCACGCAGTGCATGGAAGGGTGAAG-------
virilis AGGACATCAGCTCCC-TGGGGGTCGGCTGACGGCTGGCCGGGT--------------------TCTGATTCCGATTTCAATGGCGATTGCACGGCATGTA---AAGGGTGAA--------
mojavensis AGGACATCAGCTCCCTTGGGGGTTGGCTGACGGCTAGCCGGGTTCTGGTTCTGATTCGGATTCTCTGATTCCGATTCCAATGGCGATTGCACGGCATGTA---AAGGGTGAAGCGGCAGC
grimshawi AGGACATTATCTCCC-TGGGGGTCGATTGTCGGCTGGCCGGGC--------------------ACTGATTC------------CGATTGCATGGCATGTA---AAGGGTGAA--------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster T---ACCGACACCGACTCGCCCAGCGGCAGGTCTCGCCCTGGTGGCCAGCAG------CCAGCGCTTTT----------CCCCGATT--TTCCC---CGCATTCCTTTCTCTACT---TT
simulans T---ACCGACACCGACTCGCCCAGCGGCAGGTCTCGCCCTGGTGGCCAGCAG------CCAGCGCTTTT----------CCCCGATT--TTCCC---CGCATTCCTTTCTCTACT---TT
sechellia T---ACCGACACCGACTCGCCCAGCGGCAGGTCTCGCCCTGGTGGCCAGCAG------CCAGCGCTTTT----------CCCCGATT--TTTCC---CGCATTCCTTTCTCTACT---TT
yakuba TACCACCGACACCGACTCACCCAGCGGCAGGTCTCGCCCTGGTGGCCGGCAG------CCAGCGCTTTT----------CGTCGATT--TTCCC---CGCATTCCTTTCCCTACT---TT
erecta T---ACCGACACCGACTCGCCCAGCGGCAGGTCTCGCCCTGGTGGCCAGCAG------ACAGCGCTTTT----------CTTCGATT--TTCCC---CGCATTCCTTTCCCTACT---TT
ananassae ----ACCGGCACCGATTCGCTCAGCAGCAGGTCTCGCCCTGGTGGC-------------CAGCGCTTTT----------CCTCAATT--TTTCCCTGCACATTCCTTTCTCTAGA---TA
pseudoobscura ----AAACACACCGGCTCCCGCTGCGGCAGGTCTCGCCGCGGTGCCCAGCAGTATGGCCCTGTGTCTTTG---------ACTCGGTT--TTCCG-----------TTTTCCTACG---CT
persimilis ----AAACACACCGGCTCCCGCTGCGGCAGGTCTCGCCGCGGTGCCCAGCAGTATGGCCCTGTGTTTTTG---------ACTCGGTT--TTCCG-----------TTTTCCTACG---CT
virilis ------CGAAAACAGCTTTCGCAGTAGTAGCTCCCGCTGGGATGA--GAAACGTTTTCCAAGCATTTTTGTCTTACTTTTCTCGATT--TTCTT-----------------TGTA---GT
mojavensis AGA-ACCAGAAGCAGCTTTTGTAGCACCGACTCCTGCTGGGTTGAGCGAAACGTTTTCCATGCATTTCTG---------TCTCGATT--TTCTT-----------------TGTT---GC
grimshawi -----CCAGGGGCGAAATTCACAACAGTAGCTCCCGCTGGGATGAG-AAAATGTTTTCCAAGCAGTTTTGTCTTGCGA-TTTCGATTTATTTTT-----------------TGTTTTGAC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CTTGT---------CTAGTTTTTTGTTTC-----TTATTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACGGTGTGCGGAGATGCG--CTCGG--------------
simulans CTTGT---------CTCGTTTTTTGTTTC-----TTATTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACGGTGTGCGGAGATGCG--CTCGG--------------
sechellia CTTGT---------CTCGTTTTTTGTTTC-----TTATTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACGGTGTGCGGAGATGCG--CTCGG--------------
yakuba CTTGT---------CTAGTTTTTTGTTTCTCTTTTTTTTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACT--GTGCGGAGATGCG--CTCGG--------------
erecta CTTGT---------CTCATTTTTTGTTTC------TTTTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACG--GTGCGGAGATGCG--CTCGG--------------
ananassae TTT---------------TTTTGTACACT-----TTTTTT-TTAGCAATTTTCCTCGCTACCTGTGTGAATTTTTTGCGCGGCA--GTGCGAAGCTGCG--CCTGG--------------
pseudoobscura CCTATGCCAGGCGATTCTTGTGTTATTTT-----CTTTTT-TTACCGATTTTCCACGCTACCTGTGCGAATTTTTTGCGCGACG--G---------------------------------
persimilis CCTATGCCAGGCGATTCTTGTGTTATTTT-----C-TTTT-TTACCGATTTTCCACGCTACCTGTGCGAATTTTTTGCGCGACG--G---------------------------------
virilis TTTCT---------CTATTTTTCTTCTTT-----TTTTTTTTTACCAATATTTCACGCTACCTGTGTGAATTTTTTGCGCGACG--GTGCGTGGATGATACAGCGA--------------
mojavensis TCTGT---------ATATGACTTTTTTTT-----TGTGTT-------GTGCTGCACGCTACCTGTGCGAATTTTTTACGCGATA--GTGCGTGGATGATGCAGCAAAGGGAGATGCAATA
grimshawi TTTTT---------TTATTTTTATTTTTC-----TTTTTT-TTAGTAATTTTTCACGCTACCTGTGCGAATTTTTTGCTTGACG--GTGCGTGGCTGATGCAGCAGAGAGAAAGGCAAC-
Summary BBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBMMMMMMMMBBBBBMMMMMMMMBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGCC
simulans ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGCC
sechellia ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGTC
yakuba ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGCC
erecta ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGCC
ananassae ----------AATGGGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTGCCAGCC-----GCCTCTCACTT----TTACCCGCTTGCC
pseudoobscura --------------TGCACAGGCTCCGTGTTTATGTTTCGGAAATC-AAAATTTCGCTATCTACAAATTGCTGCCGCATCCTCTGGATCAGAGCCTCTCACTTTGGGTCGACCGCTTGCC
persimilis --------------TGCACAGGCTCCGTGTTTATGTTTCGGAAATC-AAAATTTCGCTATCTACAAATTGCTGCCGCATCCTCTGGATCAGAGCCTCTCACTTTGGGTCGACCGCTTGCC
virilis -------GGCAATGGGAATGGGCTTCGTGTTTATGTTTCGGAAATC-AAAATTTCGCTATCTGCAAATTGCGGGC-CAGGG---------------ATCACTT-----TTCCCGCTTGCT
mojavensis GAAAAGCAGAAATGGGAATGCGTTTCGTGTTTATGTTTCGCAAATCAAAAATTTAGCTATCTGCAAATTGCATGCTCAGGC---------------ATCACTT-----TTCCCGCTTGCT
grimshawi -------TGAAATGGGAATGTGCTTCGTGTTTATGTTTCGGAAATC-AAAATTTCGCTATCTGCAAATTGCAGGC-CACGG---------------CTCACTT-----TTGCCGCTTGCT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBRRRRRRRRBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBM
melanogaster GTTTTATGG------CTTTCA---TGTC--------TCTTCTTTTTTGC--ACTGCTGCCT----TTGTGCCGAG--TTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
simulans GTTTTATGG------CTTTCA---TGTC--------TCTTCTTTTTTGC--ACTGCTGCCT----TTGTGCCGAG--TTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
sechellia GTTTTATGG------CTTTCA---TGTC--------TCTTCTTTTTTGC--ACTGCTGCCT----TTGTGCCGAG--TTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
yakuba GTTTTATGG------CTTTCT---TGTC--------TCTTCTTTTTTGC--ACTGCTGCCT----TTGTGCCGAG-TTTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
erecta GTTTTATGG------CTTTCT---TGTC--------TCTTC-TTTTTGC--ACTGCCGCCT----TTGTGCCGAG-TTTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
ananassae GTTTTATGG------TTTTTTTTCTTTT--------TCTTCCTCCTTGCCGCTTGCCGCCTGCCATTGTGCGGAG-TTTTTCTCCTAAAAGG-TTTCATGTCAACGGCA-ATTTTTTATG
pseudoobscura GTTTTATGG------CTTTTA---TGTCTCTCTGTGCCTCTCTCTCTCT--GTTCTTG-CT----TTGTGTCGAGTTTTTTCCTGTAAAATGTTTTCGTGTCGGCAGCA-ATTTTTTATG
persimilis GTTTTATGG------CTTTTA---TGTC-----GTGCCTCTCTCTCTGT---TTTTTG-CT----TTGTGTCGAG-TTTTTCCTGTAAAAGGTTTTCGTGTCGGCAGCA-ATTTTTTATG
virilis GTTTTATGACAGCACCTTTCG---TTTT--------GCTTTTTTATTTT--CCTT---ATT----TT---------TCTTTTTTTTTAAAGGTTTTCACGTCAGCGGCAAATTTTTTATG
mojavensis GTTTTACGACAGCACCTTTCG---ATCT--------GTTGTTTT---------------CG----TT---------TCTTTTTTATAAAAGGTTTTTACGTCAGCGGCATATTTTTTATG
grimshawi GTTTTATGACAGCACCTATCG---TTTT--------TTCCTTTTATTTT--ATTT-TGAGT----TT---------GTTTTTTCGTGAAAGGTTTTCACGTCAGCGGCACATTTTTTATG
Summary MMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMRRRRRRRRMMMMMMMMBBBBBBBBBBMMMMMMMMBBB
melanogaster GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--TGTTCAAGC---AGACAAAAT---AAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAA-TT--GTATATGT-------
simulans GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--CGCTCAAGC---AGACAAAAT---AAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TT--GTAAATCT-------
sechellia GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--CGCTCAAGC---AGACAAAAT--AAAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TT--GTAAATCT-------
yakuba GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--CGTTCAAGC---AGACAAAAT---AAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TT--GCAAATCT-------
erecta GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--CGTTGAAGC---AGACGAAAT---AAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TT--GTAAATTT-------
ananassae GTTT-GCAAGTTGCGACTTTCCAACATCA--------CAAGCCCGAGACAATGTTCGAAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TTTGGGAAATCT-------
pseudoobscura GTTT-TCAAGTTGCGACTTTCCCACTACAACAACATTCGAGC---CGA----AT---AAAAAAAGGACAATTTTTGCGTAATACTGTGAAAGGTGCATATCTT--GCGATTCTCCGTTGC
persimilis GTTT-TCAAGTTGCGACTTTCCCACTACAACAACATTCGAAC---CGA----AT---AAAAAAAGGACAATTTTTGCGTAATACTGTGAAAGGTGCATCTCTT--GCGATTCCTCGTTGC
virilis GTTGGGCAAGTTGCTAGTTTCCGACAACAAT--------------G------CG--------AGGGACAATTTTTGCGTAATATTTTGAAAGGTGCATTT-GT--ATGGAGTT-------
mojavensis GTTGGGCAAGTTGAGAAGTGCCGGCAACAAT--------------G------CT--------AGGGACAGATTTTGCGTAATATTTTGAAAGGTGCATTT-GT--GCAGAGTT-------
grimshawi GTTTGGCAAGTTGCGAGTTTGCAACAACAAC--------------GGAC---AA--------AGGGACATCTTTTGCGTAATATTTTGAAAGGTGCATTC-GT--CCACATTT-------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBMMMMMMMMRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -TGCTCGGCTGCAGTTGTAAATCATTGTGATTTTTTCTAGTTTCCGCTGCATTTTTTATGAGACTGAACAGT-TGGCAAAATATT-TACGGG-CGAATAAGGCCGTGACATTTGA--A--
simulans -TGCTCGGCTGCAGTTGTAAATCATTGGGATTTTTTCTAGTTTCCGCTGCATTTTTTATGAGACTGAACAGT-TGGCAAAATATT-TACGGG-CGAATAAGGCCGTGACATTTGA--A--
sechellia -TGCTCGGCTGCAGTTGTAAATCATTGGGATTTTTTCTAGTTTCCGCTGCATTTTTTATGAGACTGAATAGT-TGGCAAAATATT-TACGGG-CGAATAAGGCCGTGACATTTGA--A--
yakuba -TCCTCGGCTGCAGTTGTAAATCATTGGGATTTTGTCTAGTTTCCGCTGCATTTTTTATGAGACTGAACAGT-TGGCAAAATATT-TACGGA-CGCATGAGGCCGTGACATTTGA--A--
erecta -TGCTCGGCTGCAGTTGTAAATCACTGGGATTTTGTCTAGTTTCCGCTGCATTTTTTATGAGACTTAACAGT-TGGCAAAATATT-TACGGA-CGCATGAGGCCGTGACATTTGA--A--
ananassae -TTCTCGGCTGTGGCTGTAAATCAT---------------CTTCAGTTGCATTTTTTATGAGATTGGGCAGT-TGGCAAAATATT-TACGGC-CCGATGAGCCCGTGACAGTCAA--A--
pseudoobscura GTTCTCAGTTGCAGCTGTAAATCATTTCGGGTTTTCAAA----CCTATGCATTTTTTATGATATTCGGCAGT-TGGCAAAATATT-GACGGATCGATTGAAGCCGTGACA--TGA--ACG
persimilis ATTTTCAGTTGCAGCTGTAAATCATTTCGGGTTTTCAAA----CCTATGCATTTTTTATGATATTCGGCAGT-TGGCAAAATATT-GACGGATCGATTGAAGCCGTGACA--TGA--ACG
virilis -----CCACTGGAGTTGTAAATCATTTACTTT---------CCTCAGAATGGGTTTTA------TAAACGTTATGACCAACAATT-TACAAG-CG-------------------------
mojavensis -----CCGCTGTAGTTGTAGGCCATTTGTGGTT-----AGATTTCGATTTGCTTTTTATTTTATTGGACAAAGCAAGCGAAAACTGTTCAAA-TATTTTAAATTG-GACGTTTACTTA--
grimshawi -----CCACATGAGTTGTAAATCA-TTGTACTTTATGGAAATCTAAGGAGGTCTATTA----------------------ATATT-TGC-------------------------------
Summary BBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBRRRRRRRRMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ------TTTACCTCAACCGATAAGA-AGTATTGGTGATTCACTGG--TGGAAAATACAAAAAACCCCAGCTCCTGTTTTTCGGATGAACGGAA-CAGTGATGTTAAG----AAAAAAATT
simulans ------TTTACCTCACCCGATAAGA-AGTATTGGTGATTCACTGG--TGAAAACTTAAAAAACCCCTAGCTCCTGTTTTTCTGATGAACAGAA-CAATGATGTTAAG----ATAAAAATG
sechellia ------TTTACCTCAACCGATAAGA-AGTATTGGTGATTCACTGG--TGAAAACTCAAAAAACCCCTAGCTCCTGTTTTTCTGATGAACAGAA-CAATGATGTTAAG----ATAAAAATG
yakuba ------TTTACCTCAACCGATAAGA-AGTATCGATGATTCACTGG--TGGAA---------------------TCATCTTCTAGTGTACAAAA-TAGTGCTGTTACGCCTTAAAAAAATA
erecta ------TTTACCTCAGCCGATAACA-AGTATTGGTGATTCACTGG--TGGAAAAT--AAAAAACCCTAGCTCCTGTTTTTCTGATGTACAAGA-CAGTGTTGTTACG----AAAGAAATT
ananassae ------TTTACCTGAACTGATAAGCTTGTTGAGGTGAGTCATTAG----------------------------GATTTCTCTTTTTAACA----------TTTTAAA----GT-------
pseudoobscura GGCAGCTCTACCTGTGCTGTTCATC-AGCTCTGGTGAGTCATTAC--CAGATAAGACAA-------------------------------------------------------------
persimilis GGCAGCTCTACCTGTGCTGTTTACC-AGCTCTGGTGAGTCATTCC--CAGATAAGACAA-------------------------------------------------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------GCCACGTTAATAGTTAGCC-AGTTATGTTTATCTGCTATAATAAAAATTTAAG------------------------AAATACAAAATTAGTATTCCCCTT----CTATTAATT
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TATATGTATGG-----ACGCC----------------------------------------------------GA--------------------A-TGGTCCCAAATGTCTTA---AAA
simulans TATATGTATTGCATTTACACCTT------------------------AATAAAA------TATATTT-----AGAAATTGTTCTAG---CATGTCA-CGGACCCAAATGTTTTA---AAA
sechellia TATATGTATTGCATTTACGCCTT------------------------AATAAAA------TGTATTT-----AGAAATTGTTCTAG---CATGTCA-CGGACCCAAATGTTTTA---AAA
yakuba AAT--------AAATTAC-----------------------------AAAAGAA------AATAGTTACATAAGAACTAGTTACAGGTTTCTGGCA-CTTGCTCCAATG-ATTA---AAA
erecta GATTTGTATTAAATTTACGTTGATAGCTAACCTATTAGTTAATAGCTAAAAAAATAGGTTAATAGCTGCACAAGAACAAGTTAAAGGGTTCTAGCA-TATT----------TTA---AAA
ananassae ------------------------------------------------------------TTTACTT----------------------------------------TGCATTT---AAC
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis --------------------------------------------------------------------GGTCGGAGACGACAGTAAAACCCCCCCACCAGTCCGAAATCATTTC---AAG
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis TAAATTTATATTTTATACAGCAT------------------------AAGCTAA-----------------------------------------A-TGGATTTAAAAATATTAGACAAA
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TGG------AAAAGAATCGTTTTATTTAATTTCATTA-----TCCGATAATT-----AAATTCAAATTAATCTTTTAAATTAATTTCTTGTTAAACAAACACTATACT---TTGCTTTTA
simulans TGG------AAAATAATCGTGTTATTTAATTTCATTA-----TCCGATAATT-----AAATTCAAATTAATCCTTTAAATTAATTTCTTGTTACACAAACACTACACT---CTGCTTTTA
sechellia TGG------AAAAGAATCGTGTTATTTAATTTCATTA-----TGCGATAATT-----AAATTCAAATTAATCCTTTAAATTAATTTCTTGTTACACAAACACTATACT---CTGCTTTTA
yakuba TGGGCTTAGAAGAGAATCGTTTTATTCAATTCTACTA-----TACGATAATT-----AAATTCAAATTAATCCTTTAAATTAATTTCTTGTTACACAAACACCACACT---CTACTTTTA
erecta GGGGCTTA-AAAAGAATCGGTTTATTCAATTCCATTA-----CACGATAATT-----AAATTCAAATTAATCCTTTAAATTAATTTCCCGTTGCACAAACACTACACT---CTGCTTTTA
ananassae AGG------AA------------ATTAAATTCCA--A-----TAAAATAACTGCCCCACTTGCAAATTAA---TTTCCATTACTCCTTGGTT------ATTCTATACCAGGATATTTTTA
pseudoobscura ----------------------------------------------------------------------------------------------------------------TATTTTTA
persimilis TTG------ATA----------TTTTTAATTTCAGAAAAGCTTCCGGGGACC-------ATTCAA----------TCGATAAACATCC--------------------------------
virilis -------------------------------------------------------------------------------------------TATTTTATCATTTCGTT---T--ATTTTA
mojavensis TTG------AAATAAAGTATTATATTT-CTTATATCA-----TTCCAAAGTT-----TATGAAAAAAAAAGACTT----TTAATATTATGTTATATAAAAATTACAAT---T--ATTATA
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMM
melanogaster ATTTAAGGAGAGCAGCAATAAAATGCGAAAAACATT-GTTACTGG---------A------GTGAACAGGAAACAGTGTAA-------AGGG-------AAGGGGGCA------------
simulans ATTTAAGGAGAGCAGTAATAAAATGCGAAATACATT-GTTACTGG---------A------GTGGACAGGAAACAGTGAAA-------AGGG-------AAGGGGGCA------------
sechellia ATTTAAGGAGAGCAGTAATAAAATGCGAAATACATT-GTTACTGG---------A------GTGGACAGGAAACAGTGAAA-------AGGG-------AAGGGGGCA------------
yakuba ATTTAAGGAGAGCAGCAATAAAATGCGAAAAACATT-GTCACTGG---------A------GTGGACAGGAAGTAGTGGAA-------AGGG-------AAGGGGGCA------------
erecta ATTTAAGGAGAGCAGCAATAAAATGCGAAGAACATT-GTCACTGG---------AGTGGACGTGGACGTGAAATAGTGGAA-------AGGGGAGCAAAAAGGGGGCA------------
ananassae ATTTCCAGAGAGCTGCCATAAAATGGGAAAAACATTCGATGCT-G---------A------GTGGACAGGA---AGTGAAA-------GGGG-------GAATGGGCAAGGGGCTAGGGG
pseudoobscura ATTTCAGAAAAGCTTC-------CGGGAAATATCTA-GATGCTGGCTGGTACGAA------ATCGTCTGGACCCAGT-----------CGGG-------GAAAGCCAA------------
persimilis -----------------------------------A-GATGCTGGCTGGTACGAA------GTCGTCTGGACCCAGT-----------CGGG-------GAAAGCCAA------------
virilis GCTGCACGTGA--AATTCTGAAGCACAGAAAATAAT-GCC---------CATAAA------ATGGCCAAATTCAAGTTTCACGACTGGCGGA-------ACTTTGGCA------------
mojavensis ATTGTTAGTG-------TTAAAATATAAATAGAATT-TTT--------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary MBBBBBBBBBBBBBBRRRRRRRRBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -AT-----AGCAATTTCAATTCTAATCAACCCCCCTTTCCCGTTTTCCCCC---TGCTATCCTGTGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
simulans -AT-----AGCAATTTCAATTCTAATCAACCCCCTTT-CTGTTTTCCCCTC---TGCGATCCTGTGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
sechellia -AT-----AGCAATTTCAATTCTAATCAACCCCCTTTCCCGTTTTCCCCTC---TGCGATCCTGTGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
yakuba -AA-----AGCAATTTCAATTCTAATCAA-CCTCCTTCCCG-TTTCCCCTC---TGCAATCCTGCGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
erecta -AA-----AGCAATTTCAATTCTAATCAAGCCCCCTTCCCGCCTTCCCCTC---TGCGATCCTGTGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
ananassae GAA-----AGCAATTTCAATTCTAATCAACCC-------------CCCCTT---TCCGCTCCCGCTGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
pseudoobscura -AA-----AGCAATTTGAATTCTAATCAAACT------CCAGCTACTTCTTGGGGGCATGAGTGGGGC----------AGGAGTTACGGAATACCGAACTAATCTAAATTATTTACACGC
persimilis -AA-----AGCAATTTGAATTCTAATCAAACT------CCAGCTCCTTCTT-GGGGCATGAGTGGGGC----------AGGAGTTGCGGAATACCGAACTAATCTAAATTATTTACACGC
virilis -ACCTCCAAGAAACTTGAATTCTAATCAACCCCC------------------------AGTTAGTAACAGACAGTCTA-------TACAAATGCTAAACTAATCTAAATTATTTACACGC
mojavensis --------AACAACTTGAGCTCTAATCAACCCCC------------------------GGCTAGCGGCAGACAGAGCT-------CGCAAATGGTAAACTAATCTAAATTATTTACACGC
grimshawi -AC-----AACAACTTGAATTCCAATCAGCCCCC---------------------------------------------------CAAAAATGCTAAACTAATCTAAATTATTTACTCGC
Summary BBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRMMMMMMMMBBB
melanogaster TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CAATGGCTAAGCGCAGGTGCGAGCGAGA
simulans TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CGATGGCTAAGCGCAGGTGCGAGCGAGA
sechellia TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CGATGGCTAAGCGCAGGTGCGAGCGAGA
yakuba TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CAATGGCCATGCGCAGGTGCGAGCGAGA
erecta TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCG-CCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CAATGGCTGAGCGCAGGTGCGAGCGAGA
ananassae TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGCCGCAATGGCAA----CAGGTGCGAGCGAGA
pseudoobscura TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACGAGATTTATGAGCCCCGCAATGGCGGC--T----GCGACGCGCAGGTGCGAGCGAGA
persimilis TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACGAGATTTACGAGCCCCGCAATGGCGGC--T----GCGACGCGCAGGTGCGAGCGAGA
virilis TACAGTAAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAAAGAGATTTACGACAATCGCAATAGGGGC------------GCACAGGTGCGAGCGAGA
mojavensis TACAGTGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAAAGAGATTTACGACGCTCGCAGTGGTGGC------------GCGCAGGTGCGAGCGGGA
grimshawi TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACTCGCCCCTAAAGGAGATTTACGACTCTCGCAATGGTGGC------------GCACAGGTGCGAGCGGGA
Summary BBBBBBBBBBBRRRRRRRRBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TGGCTGC---TGGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCTTCGCACAGGTAGACA------------------CA--CACACACACATTGTCAT
simulans TGGCTGC---TGGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCTTCGCACAGGTAGACA------------------CA--CACACACATA--GGCAA
sechellia TGGCTGC---TGGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCTTCGCACAGGTAGACA------------------CA--CACACATATA--GGCAA
yakuba TGGCTGC---TCGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCTTCGCACAGGTAGACACACT--------------CA--CACACACTTA--AGCAG
erecta TGGCTGC---TCGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTG-CTTCGCACAGGTAGA--------------------CA--CACACACTTG--GCCAG
ananassae TGGCTGCACACCGCTCGCAGGACCGGAGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCCTCGCACAGGTAGACACACGCATTCACTCACTCACA--CACACACACA--CACAG
pseudoobscura CGGCTGC--AGTGCGCACA-------GGAGTGATGGAATCCAACATGGCTGCCGCGGTGTCTG-TGTCGGACAGGTAGACA------------------CA--CGCACACAAA--TACAC
persimilis CGGCTGC--AGTGCGCACA-------GGAGTGATGGAATCCAACATGGCTGCCGCGGTGTCTG-TGTCGGACAGGTAGACA------------------CA--CGCACACAAA--TACAG
virilis TGGCTAC--TTTATGCACA-------GGAGTGCTGGAATCCAATATGGCTGCCGCAGTGTCTG-TGTCGGACAGGTAGACA------------------CA--CGCGCAGACT--AACAT
mojavensis TGGCACC--AGTGCGCAAA-------GGAGTGCTGGAATCCAATATGGCCGCCGCATTGTCTG-TGTAGGACAGGTAGACA------------------CA--CGCACACACA--CACAC
grimshawi TGGCTGC--ATTGCGCACA-------GGAGTGCTGGAATACAATATGGCTGCCTTCGCGTATG-GGTCCGACAGGTAGATA------------------CACTCACACACACA--CACAC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AGA----------------GAGA----------------------------------GGGAAAGAGCAAAACGTCGGCATGGCAACGCC------------------T----------GA
simulans GGG----------------GAGT----------------------------------GGGAAAGAG-AGAACGTCGGCATGGCAACGCC------------------T----------GA
sechellia GGA----------------GAAT----------------------------------GGGAAAGAG-AGAACGTCGGCATGGCAACGCC------------------T----------GA
yakuba GGA--------GAGTGGGACAGA----------------------------------GGGAAAGAG-AGAACGTCGGCATGGCAACGCC------------------T----------GA
erecta GGAGAGATGGTGAGAGGGTGAGA----------------------------------GGGAGAGAG-AGAACGTCGGCATGGCAACGCC------------------T----------GA
ananassae ATG----------------GAGA----------------------------------GAAGGAGAG-AGAGTGTTGGCATGGCAACGGC------------------TGATGGAGAAAGA
pseudoobscura AGT------------------------------------------------------------GAG-AGAGCGTCTGTATGGCAACGAA------------------T----------GT
persimilis AGT------------------------------------------------------------GAG-AGAGCGTCTGTATGGCAACGAA------------------T----------GT
virilis ACA----------------CACACGCAAACGCATATT--------------------AAGAAAGCG-GCGGCGTCGTCATGGCAACGAC------------------T----------GT
mojavensis AAA----------------CAGACAGAGAGAAACATG--------------------AAGAATGCG-GGAGCGTCGTCATGGCAACGGC------------------A----------GT
grimshawi ACA----------------CACACACAAAGCCATATGCAGAGACACACACACACTCTCAGAAAGCG-GGAGCGTTGTCATGGCAACGACTGTTGTTGTTGTTGTTGTA----------GT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GTTTTTTCTTAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--GC------------
simulans GTTTTTTCTAAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--CC------------
sechellia GTTTTTTCTAAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--CC------------
yakuba G-TTTTTCTTAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--GC------------
erecta G-TTTTTCTTAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--CC------------
ananassae GATGGACGGGGGATTGAGTGGT-------------------------------------------------------GAGTCGGCGC--GG-GAAACCGGAATG--CCATCCACCGGGAA
pseudoobscura GCTG------------AGTGGT-------------------------------------------------------GAGTCGGCGC--AGGCAAACCGGAATT--TT------------
persimilis ----GCTGACAGAGCAAGTGGT-------------------------------------------------------GAGTCGGCGC--AGGCAAACCGGAATT--TT------------
virilis TGTTGCTGCTGCTGGCAGAGAG-------------------------------------------------------AGGTCGAC-----------------------------------
mojavensis TGTTGTTGTTGTTGGCAGAGAG-------------------------------------------------------ACGTCGACGCCAAGCGAAACCGGTATT--TG------------
grimshawi TGTTGTTGTTGCTGGCAGAGAGCAGTAAGCGTCGCCGTTGTTATTTGGTGGTGACTCTGAGTGGTGTTGGTGGTGGTGAGTCGGCGCCAAGCGAAACCTGAATTGCTG------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --GAAG-AGAGC--------ACTCACACGTGGATGTGAATGTGGA------------TCTGAGCGAAAAGGAGAGCGCTCACTTTGAGTCACGG-------CCCAACTTTGTTATTGATT
simulans --GAAG-AGAGC--------ACTCACACGTGGATGTGAATGTGGA------------TCTGAGCGAAAAGGAGAGCGCTCACTTTGAGTCACGG-------CCCAACTTTGTTATTGATT
sechellia --GAAG-AGAGC--------ACTCACACGTGGATGTGAATGTGGA------------TCTGAGCGAAAGGGAGAGCGCTCACTTTGAGTCACGG-------CCCAACTTTGTTATTGATT
yakuba --AAAG-AGAGC--------ACTCACACGTGGATGTGCATGTGGATGTGGATGTGGGTCTGAGCGGAAAGGAGAGCGCTCAGTTTGAGTCACGG----CAACTCAACTTTGTTATTGATT
erecta --GAAG-AGAGC--------ACTCACACGTGGATGTGCATGTGGATGTGGC------TCTGAGCGGAAAGGAGAGCGCTCAGTTTGAGTCACGG-------CCCAACTTTGTTATTGATT
ananassae AAAGAG-AGAGCGCCTGCCTGCCTACACGTGGAGCTGGAGCTAGAGCCGGAGCCGGAGCTGAGCGGAAAAGAGAGCTAGGAAATTGAGTCACAAGCCGCAGCCAGAGTTTGTTATTGATT
pseudoobscura --CGAG-AGAG---------ACAGAGAGAGAGAGTGAGATGTGGG---------------GAGAGTGAGAGTGAGCACACA-------TAGCAG-------CAGGAATTTGCTATTGATT
persimilis --CGAG-AGAG---------AGAGATAGAGAGAGAGA-----------------------GAGAGTGAGAGTGAGCACACA-------TAGCAG-------CAGGAATTTGCTATTGATT
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis --AGAG-AGAGA--------A---------------------------------------------------------------------------------------------------
grimshawi --AGAGCAGAGC--------AAGCGCACTTTGAGCCAGATGGTGT------------TGCGGGCCAAAGAGCCAGCACTCAATCTCTGAAACAG-------TGCGAGAC--ATATTGATT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMM
melanogaster TTCCAATG---CCA--ACT------GCAGTTCCACTCA--------TATCGAA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGGAAAAGTCTAGAGTCTAAGACGGT
simulans TTCCAATG---CCA--ACT------GCAGTTCCACTCA--------TCTCGAA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGGAAAAGTCTAGAGTCTACGACGGC
sechellia TTCCAATG---CCA--ACT------GTAGTTCCACTCA--------TCTCGAA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGGAAAAGTCTAGAGTCTACGACGGC
yakuba TTCCAATG---CCA--ACT------GCGGTTCCACTCA--------TCTCGAA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGG-AAAATCTTCTGTCTACGACGGT
erecta TTCCAATG---CCA--ACT------GCAGTTCCACTCA--------TCTCAAA-------------AACTATTCGAAAAGCGTTAAATCCGCTTGGGAAAAATCTACAGTCTACGACTGT
ananassae TTCCACGG---CCGCTGCT------GCTTTTCCACTCA-------------AA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGGAAACG--GACAATC---GACGTT
pseudoobscura TTCCATTGAACCCG--GCCAGGAAGGCATTTTCACTCAATACTCATTTTCAAACTGGCAATCAAATCATGATTCGAA---CGCAGAGACAGCTATGGAAGAGACGAAAATC---CACATT
persimilis TTCCATTGAACCCG--GCCAGAAAGGCATTTTCACTCAATACTCATTTTCAAACTGGCAATCAAATCATGATTCGAA---CGCAGAGACAGCTATGGAAGAGACGAAATTC---CACATT
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi TTTCATTCAAGTCA--ACG------GCAGATT----------------------------------------------------------------------------------------
Summary MMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTCAATTCGGGTTTCG---GATTT-----------------------------------GAGTGTTTAAGCGAGCGGCGTTGTGGGGGACTTTCGAGGGTTC----------ATTGATCT
simulans TTCAATTTGGGTTTCG---GATTT-----------------------------------GAGTGTTTGAGCGAGCGGCTTTGTGGGGGACTTTCGAAGGTTC----------ATTGATCT
sechellia TTCAATTTGGGTTTCG---GATTT-----------------------------------GAGTGTTTGAGCGAGCGGCTTTGTGGGGGACTTTCGAGGGTTC----------ATTGATCT
yakuba TTCAATTCTGGTTTCG---GTTTT-----------------------------------GAGTGTTTGAGTGAGCGGCTTTGTGGGGGCCTTTTGAGGGTTC----------ATTGATCT
erecta TTCAATTCTGGTTTCG---GATTT-----------------------------------GAGTGTTTGAGCGAGCGGCTTTGTGGGGGACTTTTGAGGGTTC----------ATTGATCT
ananassae TTCAAATCGGGCTCTG---GGATTTGTTTTCTTCTTTCTTTATTTTTGTTTGCGAGTGAGTGCGTCTGGACGAGCGGCTTGGTGGGAGTCTTTC-AGGGTTC----------AATGATCT
pseudoobscura TTAAACAAAAATATCAACTGAGTC-----------------------------------GAGTTTGTGAGTGGCAGTCCATCGTGAGGTCTTTT-ACGGTCT----------TTAAATCC
persimilis TTAAAGAAAAATATCAACTGAGTC-----------------------------------GAGTTTGTGACGGTCAGTCCATCGTGAGGTCTTTT-AGGGTTCATTCATATTGATAAATCC
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ----------------------------------------------------------------------------------------------------------------------CT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTCTAAAAATTATGAA-------ATCTTTATTA-TAAGCAGAGTA-TGGAGGAGCTCAGTGAGAGCCAAAGGAGCAGAAGAAGATAGGTAGAGGTAG-TACA--------------AATA
simulans TTCTAAAAATTATGAA-------ATCATTATTA-TAAGCAGAGTA-CGGAGGAGCTCAGCGAGAGCCAAAGGAGCAGAAGAAATTTTGTAGAGGTAG-TACA--------------AATA
sechellia TT-TAAAAATTATGAA-------ATCATTATTA-TAAGCAGAGTA-CGGAGGAGCTCAGCGAGAGCCAAAGGAGCAGAAGAAATTTTGTAGACGTAG-TACA--------------AATA
yakuba TTCTAAAAATTATGAT-------TTCATTATAA-TAGGGAGTGTA-TTTAGGAGCTCAACGAGAGCCAAAGGGGCTAATGAAATGTTGTGGAGGTAG-TACA--------------CGCA
erecta TTCTAAAAATTATGAT-------TTCAAATTAA-TAAGGAGAGTA-TTTAGGAGCTCAACGAATTCCAAAGGGTCAGGAGAAATATTGTCGA-GTAG-TACA--------------AGCA
ananassae TTTCACAAAAGAGAAA-------AT--TTATTA-GACATTGAAAA-T-------------------------------------------------------------------------
pseudoobscura TATTGGACATAAAGAATTATGAATTAAGGAATA-CGGGTGGAGTA---------------------------------------------------------------------------
persimilis TATTGGACATAAGGAA------------AACTA-CGGGTGGAGTAA-ATATGATATCAG-------------------------------------------------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi TTC---GCATAGTAAA-------GTCTCTCTGAGCACATAAAACA-TGTAATATGCAA---------------------TTGTCTCTATCGATGCAGATACACAGATAACCATTATACTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTACAGAAATGAAAGGTATTTCAAAAAGCGTTAAGTGTTGATTAGGGTGAATGAGTTTCTATTG-TTTATATA-CTGCTTAAAACAAAAATATTTAA-TT--------------------
simulans TTTCAGAAATGAAAGGTATTCCAAAAATCGTTAAATGTTGATTAGGGTAAATGAGTTTCGTTTG-CTTATATA-CTGCTTTAAACAAAAATATTTTA-TTGAATTTAATTTTAGA-----
sechellia TTTCAGAAAGTAAAGGTATTCCAAAAATCGTTAAATGTTGATTAGGGTGAATGAGTTTCGTTTG-TTTACATA-CTGCTTTAAACAAAAATATTTTA-TTGAATTTAATTTTAGA-----
yakuba TTTCAGAAATGAAAGGTGTTTCAAAAA---TTAATTGTTGATATGGAGAAATAAGTCTGGTTTG-CTTATATA-CTGTGTTAAACAAAAATATAATA-TTGAATTTAATTTTAGA-----
erecta TTTCAGAACTAAAAGGTATTTTAAAAATCCTTAATTGTTGAT------AAATGAGTTTTATTTG-TTTGTCTA-GT-TGCGTAAAGGAAATATATTA-ATGAATTTAATTTTAGA-----
ananassae ------------------------------------------------------------------------------------------------------------------------
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis -----------------------------------------------------------------TCTATAGG-----TCGTAATAAACATATTT---ATCCCTTCATTTTTAATGATCT
grimshawi TCATATGGAATAATTATAATTACAAAACATTTACTTGATGAC-GGAATAAAAAGGGTTCATAGGCTCTGAAGACATGCTCGATTTAGATTTACTTTAAATTAACTCATTTTGAAT-----
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -----------------GAAGCGTTTAATTAG-----TAAAAA---------------CAAATGAAATAAATA----TATTTTAA-----------------------------------
simulans -AGGAAACAAAAGCTAAGAAACGTTTAATTAA-----TAAAAA---------------CAAATTAATTATATA----TATTATAA-----------------------------------
sechellia -AAGAAACAAAAGCTAAGAAACGTTTAATTAA-----TAAAAA---------------CAAATTAATTATATA----TATTATAA-----------------------------------
yakuba -TACAAAC-AAAGCTCAAAA--ATAAAGTTAGTTGAATAAAAT---------------CAAATGAATT---AA----TACCTTGAAATGATAATGAATTGGTACTCTTAATTGCATTTCT
erecta -TACAAAC-AAAGCTCAAAAACATGAAATTAG-TGAATTAATA---------------TAAATGAATT---TA----TACCTTGAG----------------------------------
ananassae ------------------------------------------------------------------------------------------------------------------------
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis ------------------------------------------------------------------TAATATTAAAAAATTGTAA-----------------------------------
mojavensis ATC-------------------------------GTATA------ATTTGTAATTTATCAAA----TTACATT----TATTTTTA-----------------------------------
grimshawi -TG-------------------------------GTATGAAAAATACTTGAAAATTTCCAAT----TAGTATC----GATGATAA-----------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTGCAT--TCATTAATAACA------TGCGTCAATTTGCCCCCTGGTGAGTCATTAAGTTAGATTAATCTCACAGAGTA--TTTATAAAG---CAAAAATACCTTTGAAGTTTTCTGATG
simulans TGGCGT--TCATTAATAACA------TGCGTCATTATGCCCCCTGGTGAGTCATTAAGTTAGATTAATCTCACAGAGTA--TTTATAAAG---CAAAAATACCTTTGAAGTTATCTAATG
sechellia TGGCGT--TCATTAAAAACA------TGCGTCATTATGCCCCCTGGTGAGTCATAAAGTTAGATTAATCTCACAGTGCA--TTTATAAAG---CAAAAATACCTTTGAAGTTATCTTATG
yakuba CTGCTTACTTTCTAACATCA------TGAGTCAATATA-ACCCTGATGAGTCATTAAGTGAGATTAATCTCACGAAATACGTTTATAAAG---AAAAAATACCTTTGAAGACTTCAGACA
erecta CTGCTTAATTTTTAACACCA------AGAGTCAATATA-ACCCTG------------GTGAGATTATTCTCACGGAATATGTTTATAAGG---CCAAAATACCTTTGAAGTCTTCAGACA
ananassae ------------------------------------------------------------------------------------------------------------------------
pseudoobscura -----------------------------------------------------------------------------------------------------------------TCTGGCA
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis CATGTT--TAATAAATGGCT--------TATTGA-------------AAAGCATTACAATTAG-------------ACA--ATTAAAAAT---CATTCATATTATCGATGCGTTT---CT
mojavensis TTTCTT--TCGTTATTTCCT------TCTATTTATTTGCCCACCTCTAAAACCTTA----------------------A--TTTATATAT---CATAAAGTTTATTGAAACT--------
grimshawi TTGTAT--ATCTGAATATATATGCAATATAATTA---------------AACAATAAATGTGA-------------ATA--TAAAAACATATGCATTTAAATTATTAAAGCATATTGACA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TAAG-------CAATT------------------GACTTA--AATTCATGGATAAGAAGTGGGTTAT---------TGGTTGAATT-----TCAATTACACACTCATCGTTAAATT-AAC
simulans TAAG-------CAATTGACT------CGCAAATCGACTTA--AATTCATGGATCAGAAGTAGGTTAT---------TGGCTGAATT-----TCAATTACACACTCATCGTTAAATT-AAC
sechellia TAAG-------CAATTGACT------CGCAAATCGACTTA--AATTCATGGATCAGAAGTAGGTTAT---------TGGTTGAATT-----TCAATTACACACTCATCGTAAAATT-AAC
yakuba CAAG-------CAATTGAAT------CGTAAATCGACTCA--AATTCATAGATCAGAAGTAGGCTAT---------TGCTTGAATT-----TCAATTACACACTGATCGTTAAATT-CAC
erecta CAAGGAATCGTAAATTGAAT------CGTAAATCGAGTAA--AATTCATAGATCAGAAGTAGGCTAT---------TGGCTGAATT-----TCAATTACACACTCATCGTAAGATT-CAC
ananassae -----------------------------------------------------------TGCGTTAT-----------GATGATTT-----TCAATTGCACACTCGCCCATAAATTGCGT
pseudoobscura TCAGA------CAATTGGGTTTCCCCCCCAGGCTTCCTTG--AA------GATT-----TGGG------------------GACTT-----TCGATGGCGCTCTCA-CAATACATT-TTC
persimilis ------------------------------------------------------------------T---------TGCTTGAAGA-----TCGAT-TCGCTCTCA-CAATATATT-TTC
virilis CA---------CAGTTTGGTTTCT--TGCAAACTAGTTTT-CGATTGATTT--------AATTTTATCCGTGACTTCGATTGAATTACATCCCCGATGTACAGATAAAATTCAATG-AAT
mojavensis -----------CGTTTTGATTT--------AATTGATTTT--------------------ATTTCATCCGCGGCTTCGAATGACTTACGGCTCAGATGCACAGATAAAAGTCAATG-AAT
grimshawi GA---------CAATTCAGTTAAA--TGCAAATTTGTTTTTCAATTGATAA--------TGTTTTAT------ATTTCATTGACTTACATCTCCGTTGCACAGATAAAAGTCAATG-AAT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TTGAGAGCTTCGGTAGATTTGACAAGCGCTTAGCGGCTATCTTAA-------GTTTATA--------TTTTCGAGTTG------AGGTGG--CCGGTCGAACCGGTCCGTTGCACAATTA
simulans TTGAGAGCTTCGGTAGATTTGACAAGCGGTTAGCGGCTATCTTAA-------GTTTATA--------TTTTTGAGTTG------AGGTGG--CCGGTCGAACTGGTCCGTTGCACAATTA
sechellia TTGAGAGCTTCGGTAGATTTGACAAGCGGTTAGCGGCTATCTGAA-------GTTTATA--------TTTTTGAGTTG------AGGTGC--CCGGTCGAACCGGTCCGTTGCACAATTA
yakuba TTGAGAGCTTCGATAGATTTGACAAGCGCTAAGCGGCTATCTTAA-------GTTTATA--------TATTTGAGTTG------AGGTGG--CCGGTCGAACCGGTCCGTTGCACAATTA
erecta TTGAGAGCTTCGATGGATTTGACAAGCGCTAAGCGGCTATCTTAA-------GTTTATA--------TGTTTGAGTTG------AGGTGG--CCGGTCTAACCGGTCCGTTGCACAATTA
ananassae TTAAGCGCTC------GCTAGACAAGCGCTTAGCGGCTGTCTTGATCGGTGGGTCTTTG--------AATTT-AGTTG------AGGTGG-CCCGGTCGAACCGGTCCGTTGCACAATTG
pseudoobscura CTAATATCT-CGATAGTCGTGACAGTCGCTGAGCAGATATCGCAT-------G-----A--------CTTTGGAGCCGCATGCACGGCGG--CTGGCCTAACCGGTTAGTTGCACAATTG
persimilis CTAATATCT-CGATAGTCGTGACAGTCGCTGAGCAGATATCGCAT-------G-----A--------CTTTGGAGCCGCATGCACGGCGG--CTGGCCTAACCGGTTCGTTGCACAATTG
virilis TTA-------CTGCGCATTTAATTAGCGGTAACTAGAAATC--AG-------GTTTAAG--------TCTGCGA----------AGCTAG-CCCAAGCGAACGGGTTTATTGCACAATTC
mojavensis TTA-------CAGTGTATTCAATTAGCGGTAACTGGAAAAC--CA-------GTTGACGC-------TTTGCAC----------AGCTAA-TCCAACTGAACCGGTTCATTGCACAATTC
grimshawi TTA-------TGGC-CATTTAATTAGCGGTAACTAGAAATC--AA-------GTTTAAGCCAGGCGACTGGCGA----------TCCCAATCCCAAGCTAACCGGTTTATTGCACAATTC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CTAAGGAAAA-----CCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGAAGCGA---------CGGGCGGGTAA-------------
simulans CTAAGGAAAA-----CCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGAAGCGA---------CGGGCGGGTAA-------------
sechellia CTAAGGAAAA-----CCATTTTT---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGAAGCGA---------CGGACGGGTAA-------------
yakuba CTAAGGAAAA-----CCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGA--------------------------------------
erecta CTAAGGAAAA-----CCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGAAGCGA---------CGGGCGGGTAA-------------
ananassae CGTAGGAAAA-----ACATTTTC---------CAATT-AAGAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGACTGAAGCGG---------CGGCC-AGTAA-------------
pseudoobscura CGCAGAAAACCATTTCCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCGTAAATCGAGGCTAAAATTGACTGATACGGCCCTGCTCCTGGCCCG--AA-------------
persimilis CGCAGAAAACCATTTCCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCGTAAATCGAGTCTAAAATTGACTGATATGG--CTGCTCCTGGCCCG--AA-------------
virilis CGTGCAAAAT-----CAATTTTC---TTTCTACTTTTAAAAAATCAATTTGCGTGCCATAAACTGCCGCTGCAATTGATTGATGAT-------GCGGCGCTTCTTAA-------------
mojavensis AGTGAAAAAT-----CAATTTTC---ATTTTACAATT-GAAAATTAATGGACCTACCACAATTCGACGCTGATATTGATTAACGAT-------TCGACGATTCGCAA-------------
grimshawi A-TGCAAAAT-----CATTTTCCATTTTTTTTCAATT-TAAAATCAATTAGCTGGCCATAAACATTTGCTGCAATTGACTGGCGAT-------GTGTCATTGCTTGACCGAAACTTTTGT
Summary BBRRRRRRRRBBBBBBBMMMMMMMMBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ----------------ACAAAACAGCCAGGCGG--------------AAAATCGAGCTGAGG---GC----AGAAATCTGTTTCGGAATCGAAGGA-------AATTCCAGACGCGGTGG
simulans ----------------ACAAAACAGCCAGGCGG--------------AAAATCGAGCTGAGG---GC----AGAAATCTGTTTCGGAATCGAAGGA-------AATTCCAGACGCGGTGG
sechellia ----------------ACAAAACAGCCAGGCGG--------------AAAATCGAGCTGAGG---GC----AGAAATCTGTTTCGGAATCGAAGGA-------AATTCCAGACGCGGTGG
yakuba -----------------------AGCCACGCGG--------------AAAATCGAGCTGGGG---CC----TGAAATCTGTTTCGGAATCGGAGGA-------GATTCCAGACGCGGTGG
erecta ----------------ACAAAATAGCCAGGCGG--------------AAAATCGAGCTGGGG---CC----TGAAATCAGTTTCGGAATCGGAGGA-------AATTCCAGACGCGGTGG
ananassae ----------------ACAAAAATCCGAAATAA--------------AACGAAAAAATTGGG---CC----ACAAATC-----CAGAA----GGGA-------AATTCCAGACGCGGTGG
pseudoobscura ----------------ATGCAACAAGTAAACAA--------------ATCAGCGAGCTAGAA---CC----AGAACCACAACCAGAAACAGACAGA-------AATTCCAGACGTAGCGG
persimilis ----------------ATGCAACAAGTAAACAA--------------ATCAGCGAGCTAG-------------------AACCAGAAACAGACAGA-------AATTCCAGACGTAGCGG
virilis ----------------ACAGAATC-CGAAACTGGTATTGTTCATTTGGGCATCCGGTTGGGACAACCATCGAGTAAACAAATGCAGCGTTAAGAGATGCCGCACTTTCCAGACTCATTGG
mojavensis ----------------ATTG-----CGAATCTG--------------------------------------------------------------------------------------G
grimshawi GCGTCTAAAATATGTTACTGAGTTATGGATCGT----------TCTGAAAATCGAGCTGG-----CC---------ACAGCTGTGGCCTCTACAGACGCTAC-CATTGCAGACGCCCTG-
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CGTTGGCG---------T-----CCAAAATGGGGCTGCC--------CA---CAATGGGCAAT------------TCCACTGTATACTCT--------A---------------------
simulans CGTTGGCG---------T-----CCAAAATGGGGCTGCT--------CA---CAATGGGCAAT------------TCCACTGTATACTCT--------A---------------------
sechellia CGTTGGCG---------T-----CCAAAATGGGGCTGCT--------CA---CAATGGGCAAT------------TCCACTGTATACTCT--------A---------------------
yakuba CGTTGGCG---------G-----CCAAAATGGGGCAGATCCAAATGGGATCCAAATGGGCTAT------------TCCAGTGTATACTCT--------C---------------------
erecta CGTTGGTG---------G-----CCAAAATGGGGCAGAT--------GA---AAATGGGCTAT------------TCCACTGTATACTCT--------A---------------------
ananassae CGTTGGAG---------CAAGTACTATTCTGATACCGATTCGGAT--GG---AAATCGGTTA-------------------GGTTATTCA--------C---------------------
pseudoobscura CGTTGG-----------------CCAAATAGAG--------------CA---AGAGGCACAAT-------------CGAGTGCCTGCTTT--------GGAATCAGAATTGAAATCAGAA
persimilis CGTTGG-----------------CCAAATAGAG--------------CA---AGAGGCACAATCGAAGTCGAGTGCCGAGTGCCTGTTTT--------GGAATCAGAATTGAAATCAGAA
virilis TG-TTGAGAAAGTAGCAA-----CAAAGGTGGG---ACT--------AG---GGACTCAACGG------------------GTCAACGGTGCCGGAGCG---------------------
mojavensis CGATTGAG---------A-----CTGAGATGGAATCATC--------AA---AGACAAAGAAG------------------GACAGCGTT--------A---------------------
grimshawi -------------------------------------------------------------------------------------GCGTT--------G---------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -CGGATT--GGCTGAGGA---------------AATC-------CGAGAGGTGACAAAAAG--GCCAGGAAAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
simulans -CGGATT--GGCTGAGGG---------------AATC-------CGAGAGGTGACAAAAAG--GCCAGGAAAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
sechellia -CGGATT--GGCTGAGGG---------------AATC-------CGAGAGGTGACAAAAAG--GCCAGGAGAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
yakuba -CGGATC--GACTGAAGA---------------AATC-------CGAGAGGTGACAAAGAG--GCCAGGAAAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
erecta -CGGATT--GGCTGAGGA---------------AATC-------CGAGAGGTGACAAAGAG--GCCAGGAAAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
ananassae -CGAACC--GGGAGACGGGAAACG-GGATACGTAATC-------CGGGAGGTGACATTATA--GCCAGAGAAGTC---GTCCCAAGGCGTCGCTGTCAACATTCGGAATGG--GACCGTG
pseudoobscura TCTGATTAAGACAGAAGA---GCGTGGACCCGTAGCCGCACTGACGGAGAACGACAAGA------CGAGATGGCC---GTCCCAAGGCGCCGCTGTCAACGTTGTGAATGG--GACTTGG
persimilis TCTGATTAAGACTGAAGA---GCGTGGACCCGTAGCCGCACTGACGGGGAACGACAAGA------CGAGATGGCC---GTCCCAAGGCGCCGCTGTCAACGTTGTGAATGG--GATTTGG
virilis -GCAAAT--GGAAAAAG--------------------------------------------------GGTGAATATTTACGGAAAGGCGTC--------CCAAGAAACCG----------
mojavensis -ATAGGT--GATAAGAT-----------------------------------GATAAAGGG--GGCAGGAAAACA---GCCGAAAGCTGGC--------CAATGTGTCTGA--GTATGGG
grimshawi -GC----------------------------------------------------CAAGTACCGTCGTGGCTGCA---ACTGCAGACTGAA--------AAGGGCTGCAGATTGCATTTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AATGGTT------------ATGGGAAT------------GAGAATGGGAATGGTTATGG-------------CACAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
simulans AATGGTTATGGGAACGAGAATGGGAAT------------GAGAATGGGAATGGTTATGG-------------CCCAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
sechellia AATGGTTATGGGAACGAGAATGGGAAT------------GAGAATGGGAATGCTTATGG-------------CCCAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
yakuba AATGGTTATGGGAACGAGAATGGGAATGGGAATGAGAATGAGAATGGGAATGGTTATGG-------------C-CAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
erecta AATGGTTATGGGAAC------------------------GAGAATGGGAATGGTTATGG-------------C-CAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
ananassae AATGGTTATGGGGAGGAGAATGGTTAT------------GAGAATGGGCCCAGCCAGAC-------------CCGGGTCTGGGGATAGCCTCTATAACAATGACATTAACAATTAAAAAT
pseudoobscura -ATGGTTATGAGAATGGTTATGGGGAT------------GGGAATGGGAATCGGAATGGGAATGGGCCCAGACCCGGACCC-GGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
persimilis -ATGGTTATGAGAATGGTTATGGGGAT------------GGGAATGGGAATGGG------------------CCCAGACCC-GGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
virilis -----TTGTCAGT-----------AAT------------GTGAATGG-------------------------GTCGTTC-------------TATAACAATAACATTAAAAATTAAAAAT
mojavensis TATGAGTATGAGTAT------GGGAAT------------GGGAATGGGAACGAGCA----------------GACAGCG-------------CACAGCAGTTGC---AACAGTTGCAAGT
grimshawi TGAGATTATCAGG----------------------------GAATGC-------------------------CTCGGC-----------------------------AACAATTGAAAAT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRB
melanogaster ATTAATAATCA-----------------------TA
simulans ATTAATAATCA-----------------------TA
sechellia ATTAATAATCA-----------------------TA
yakuba ATTAATAATCA-----------------------TA
erecta ATTAATAATCA-----------------------TA
ananassae ATTAATAATCA-----------------------TA
pseudoobscura ATTAATAATCA-----------------TAAAAGTA
persimilis ATTAATAATCA-----------------TAAAAGTA
virilis ATTCATTATAA-----------------------TA
mojavensis TGCAGTTACAACTGTTGTTGCTGCTGCGCATACGTA
grimshawi ATTCATGATAT-----------------------TC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBR
hb