melanogaster TTGCGGTTTCTACTATAAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACA--TTTGAGTGACAT-CATATCAACA--------TCTTC--AA-------CGCACCTCTGC
simulans TTGCGGTTTCTACTGTAAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACA--TTTGAGTGACAT-CATATCAACA--------TCTTT--AA-------CGCACCTCTGC
sechellia TTGCGGTTTCTACTGTAAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACA--TTTGAGTGACAT-CATATCAACA--------TCTTT--AA-------CGCACCTCTGC
yakuba TTGCGGTTTCCACAATGAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACA--TTTGAGTGACAT-CACATCAACA--------TCTTC--AT-------CGCACCTCTCC
erecta TTGCGGTTTCCACACTAAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACG--TTTGAGTGACAT-CATATCAACA--------TCTTC--AT-------CGCACCTCTAC
ananassae GTGCGGTTTCCACTGCGTAGT-TCTGCCTAATTGGA-TTGAC---------TTGCAGACA--TGTGAGTGACAT-CACGTCGTCA--------TCTCC--AT-------CGCACCTTTCC
pseudoobscura GTGCGGTTTCCAATGCGTAGT-TTTGCTTAATTGGA-TTGAC---------TTAGGGACA--TGTGACTGACAT-CACGTCATCA--------TCTGC--TT-------CTCACCTTTTC
persimilis GTGCGGTTTCCAATGCGTAGT-TTCGCTTAATTGGA-TTGAC---------TTAGGGACA--TGTGACTGACAT-CACGTCATCA--------TCTGC--TT-------CGCACCTTTCT
virilis GTGCGGTTTCC-------CGC-TTTGTTTAATTGGA-TTGCCTACA-G---CCGTGGACA--TGTGAGTGACAT-CACGTCATCG---CAAAGCCATC--AA-------CGCACCTTTCC
mojavensis GTGCGGTTTCCA------CGC-TTTGTTTAATTGGATTTGCCTGCGCG---CTGCGGACA--TGTGAGTGACAT-CACGTCGTCG--CCAAAGTCATCAAAA-------CGCACCTTTTC
grimshawi GTGCGGTTTCC-------CGCTTTTGTTTAATTGGA-TTGGATATG-GGACATGTGGACATGTGTGAGTGACATCCACGTCATCGGGGCAAGCACATCTTCAGCATTCTCGCACCTTTTT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ATTTC------------TGGCACTGATTT------------CAAAACAAGTATTGCCACAAACGAGCGTAACACAAATTAGCCAATATCGACCGACGTTCAATTCACATTATTAGGTTGA
simulans ATTTC------------TGGCACTGATTT------------CAAAACACGTCTTGCCACAAACGAGCGAAACACAAATTAGCCAATATCGACCGATATTCAATTCACATTATTAGGTTGA
sechellia ATTTC------------TGGCTCTGATTT------------CAAAACACGTCTTGCCACAAACGAGCGAAACACAAATTAGCCAATATCGACCGATATTCATTTCACATTATTAGGTGGA
yakuba ATTTC------------TGGCACTGTTTT------------AAAAACACGACTTGCCACAAACGAGC------CAAATTAGTCAATATCGACCGAGACCTAATTTACTTGAATAGGTTGA
erecta ATTTC------------TGGTACTGATTT------------GAAAATACGACTTG------------------------------------------------TAACTTCCAGAAGTTGA
ananassae GTTTT------------TGGCGCCACTCTAAAATCGC-ACGCAAAACGCGCGTT-CCGTGAACGGCCATGACTGGGATTGGGGCTTATCA-------------TTCCGCTTTGAAGAAAA
pseudoobscura ATTTCCATTTTTGGTTTTGGCGCCGCTTCAAAATCGC-ACGCAAAACGCGT----CCATGAACGGCCATGACTGAGACT------------------TTCAAT---CCCTTTTAAGTTGA
persimilis ATTTCCATTTTTGGTTTTGGCGCCGCTTCAAAATCGC-ACGCAAAACGCGT----CCATGAACGGCCATGACTGAGACT------------------TTCAAT---CCCTTTTAAGTTGA
virilis ACAAT------------CGGCA--------------------------------------------------------------------------------------------------
mojavensis ACAAT------------CGTCGAGTCAATTTTTTGGCGCCGCAAAACAA-----GCCACCCATTTGGGTGGGCTAGACTAACAGATACCCTCAGCTG---------------TGGGCTGA
grimshawi TGCA----------------------------------AAGAAAAAAAA-----------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AAACGGA--TAATAT------------------AATATA-TT-------------------------TTACCAA------TTATGTA----AACGAAAACAACT-GATATATATGTCT-G
simulans AAACGGA--TAATAT------------------AATATA-TT-------------------------TTACCAA------TTATGTAAGGTAACAAATACAACT-GATATATTTGTCT-G
sechellia AAACGGA--TAATAT------------------AATATA-TT-------------------------TTACCAA------TTATGTAAGGTAACAAATACAACT-GATATATTTGTCT-G
yakuba AAACGAA--TAATTTTT---CGGGTTGGTGGCTTAAATA-TGGCTGTCTTAAAAACTAAATAGACAGTTACCAGCAATACTTATTTCTTTAAAAAATT--------ATATATTTTACT-A
erecta ---------------------------------TATATA-CG--------------------------------------TTATATAATTAAACATGT--------AGATCTT-------
ananassae TAGCGCACTTGGGAT------------------TATAAA-TC--------------------AATCTTGTTTTG------TCCTGTAGCTAAATTAGTACCACC-TATATGTATG-----
pseudoobscura CAAAAGA--TTGG--------------------AATGTA-TT-------------------------TTTTTTA------CTATAGAAA-AAATAAG--------TATATGTATATCGAA
persimilis CAAAAGA--TTGG--------------------AATGTATTT-------------------------TTTTTTA------CTATAGAAA-AAATAAGTACATACATATATGTATATCGAA
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ACAGAAT--TAAAATACGCTC------------AATCTA-TG-------------------------T------------TTATTTAAC--GAGAAACTCTACTTGGTCATTCTG----C
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AGTTGAGCATTAGTGAG--ATT------------GGCGC------ATTAAATTTGCTATATGAA-------------------------CAGATTTATTT-----TTCTGCTTATATGGT
simulans AGTTAAGCATTAGTGAG--ATT------------GGCGC------ATTAAATTTGCTATACGAA-------------------------GAGATTTATTT-----TTCCTCTTATATGGT
sechellia AGTTAAGCATTAGTGAG--ATT------------GGCGC------ATTAAATTTGCTATACGAA-------------------------GAGATTTATTT-----TTCCTCTTATATGGT
yakuba ATTTGCATATAAGTTAA--ATT-------------ACACAAGTTGATATATATTGATATATAATTAAACATGAAACCCTTAAGAAGTTGGGCATTGATTTTTTTATTTAGCGTATATTAA
erecta -------TGGAAGTTAG--GC------------------------ATTGATGCTGTTTTATGAC----------------------TTGCTTATTTATTT-----TTTAGCTTATATTAA
ananassae -GAGCAGTACCAGCAAGCAATT------------GCTTT------ACTCATTTTG----------------------------------TGGGTTAATTG-----GTCATATCAT-----
pseudoobscura AGATAAAGATGTGCTCA--ATTCTGAGAGTGGAACACAC------ACTAACCGTGATGTGAAAA----------------------TTGCGGACCAAATT--------------------
persimilis AGATAAAGATGTGCTCA--ATTCTGAGAGTGGAACACAC------ACTAACCGTGATGTGAAAA----------------------TTGCGGACCAAATT--------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis AGACGAACG-------G--ATT------------GATGA------ACAGA--TTGAAATATGAG-------------------------CAGATATAT----------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CTGAAGCTAATATTTCGTGGTTAAATCTGCCATCCTATT------------TGTTTTAGCGATATTT-GTTGCCATGCCGATTTTTGTCC---------TCTC-----TTTTAAA-A---
simulans CTGAAGCTCATATTTCGTGGTTAAATCTGCCATCGTATT------------TGTTTTAGCGATATTT-GTTGCCATGTCGATTTTTGTCC---------TCTC-----TTTTAAA-A---
sechellia CTGAAGCTCATATTTTATGGTTAAATCTGCCATCGCATT------------T-TTTTAGCGATATTT-GTTGCCATGTCGATTTTTGTCC---------TCTC-----TTTTAAA-A---
yakuba CTGGGACTTATATTTCGTGGGTAAATCTGCCATCGTA----------------TTCTGTCGATATCTGGTTGCCATGCCGGTTTTTGTCC---------TTCCCCGCATTTTAAACA---
erecta CTGGCACTTCTATTTCGTG---AATTCTGCCATCGTATT------------TGTTCTGTCGATATCT-GTTGCCATGCCGGTTTTTGTCC---------TTCCCCGCTCTTTTAA-A---
ananassae ----TGCCTACGTGACACG------------------------------------CTGCCGCGTTTT-GTTGCCAAGTCTACTTTTGTTTTCGTACAGGTCCCCCACTCTTTGAA-ACTG
pseudoobscura ----CGTCTTTCTCCCATGGGTTAATGGATCACCTCACTACCTACTTAATGTGTTCCAGCTCTTTCT-GTTGCCATGTGTATTTTCGACC-------ATTCCCCCACTCTTTGAC-A---
persimilis ----CGTCTTTCCCCCATGGGTTAATGGATCACCTCACTACCTACTTAATGTGTTCCAGCTCTTTCT-GTTGCCATGTGTATTTTCGACC-------ATTCCCCCACTCTTTGAC-A---
virilis ----------------------------------------------------------------------------------CGTCGTAC---------T--------CTTTGAC-A---
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ----------------------------------------------------------------------------------CTTTATAC---------T--------CTTTGAC-A---
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ----CGTTTGGAGCTTC-TGGC-----TGTGTTATTTAAA------AAATAAATAGCTTTGTTGCTGATAACAAACTGGTTGACT--AAATGCGCTCCGGGTGCATTGTACGACCTACTG
simulans ----CTTTTGGAGCTTC-TGGC-----TTTGTTATTTGAA------AAACAAATAGCTTTGTTGCTGATAACAAACTGGTTGACA--AAATGCGCTCCGGGTGCATTGTACGACCTACAG
sechellia ----CTTTTGGAGCTTC-TGGC-----TTTGTTATTTGAA------AAATAAATAGCTTTGTTGCTGATAACAAACTGGTTGACT--AAATGCGCTCCGGGTGCATTGTACGACCTACTG
yakuba ----CGCTTGGAGCTTC-TGAC-----AGTATTATTTGAA------AAATAAATAGCTTTGGTGCTGATAACAAACTGGTTGACT--AAATGCGCTCCGGGTGCATTGTACGACCTACTG
erecta ----AGCTTGGAGCTTC-TGGC-----AGTATTATTTGAA------AAATAAATAGCTTTGGTGCTGATAACAAACTGGTTGACT--AAATGCGCTCGGGGTGCATTGTACGACCTACTG
ananassae AGACCGAAAGGAGGCTC-CGGC------GAGTTCTTTAAA------AAATAAATAGCTTTGGCGCTGATAACAAACTGGTTGACTAAAAATGCGCTCCGGGTGCATTGTACGACCTATTG
pseudoobscura ---CCGAAAGGAGACTCTTGGC-----AAGTTCGCCTGAA------AAATAAATTGCTTTGATGCTGATAAGAAACTGGTTGACTAAAAATGCGCCCCGGGTGCATTGTACGACCTATTG
persimilis ---CCGAAAGGAGACTCTTGGC-----AAGTTCGCCTGAA------AAATAAATTGCTTTGATGCTGATAAGAAACTGGTTGACTAAAAATGCGCCCCGGGTGCATTGTACGACCTATTG
virilis ---CCGAAAGGAGATTT-TTTTGTGCAAATA-TTGCCGAATAAGCTAAAGAA---------TTGTTGATAAGAAACTCGTTGACT--AAATGCGGCCCGGGTGCATTGCTCGACCCGCTG
mojavensis -------------------------------------------------------------TCGTTGATAAGCAACTGGTTGACT--AAATGCGGCCCGGGTGCATTGCTCGACCCGACG
grimshawi ---TCGAAAGGAGATTT-CGTTGATTTGATGTTTGCCAAA------AAAAAAACGC-------GTTGATAAGAAACTCGTTGAGT--AAATGTGGCCCGGGTGCATTGCTCGACCCACTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ATAAGCATGGAAAAATCCTTGATCTTGA-----------CTCTACGTTTCAACTCGCAAATGTATGCCGG---TAAACCCAACTTAAATG---TTATTATACGTATT--TTTGTCTAG--
simulans ATAAGCATGGCAAAATCCTTGATCTTGA-----------CTCTACGTTTCAACTCGCA-------------------------------------CTCGTACGTATT--TTTGTCTAG--
sechellia ATAAGCATGGCAAAATCCTTGATCTTGA-----------CTCTACGTTTCAACTCGCA-------------------------------------CTCGTACGTATT--TTTGTCTAG--
yakuba ATAAGCCTGGCAAAATCCTTGATCTTGA-----------CGCTGCGTTTCAACTCGCAAATTTATGCTGC---TGAA-CCAACTTAAATGTTTTTTTTTTACGTATT--TTTGTCTAA--
erecta ATAAGCATGGCAAAATCCTTGATCTTGA-----------CGCTGCGTTTCAACTCGCAAGTTTATGCTGC---TAAA-CCAACTTAAATG---TTTTTGTACGTATT--TTTGTCTAA--
ananassae ATAAGCCAAGCAAAATCCTTGATCTTGA-----------CGTTGCGTTTCAACTCGCAAATTTATGTTGCCCGTGGAAGCGGCTTAAATT-----TTTATAGGTATT--GT--TCTAAC-
pseudoobscura ATAAGCGCAGCAAAATCCTTGATCTTGA-----------CGTTGCGTTTCAACTGGCAAATTTATGTTGCCCACAGCAATCGAGTAAATT---ATTTGATAGGTATTTGTTCTTCTAGTG
persimilis ATAAGCGCAGCAAAATCCTTGATCTTGA-----------CGTTGCGTTTCAACTGGCAAATTTATGTTGCCCACAGCAATCGAGTAAATT---ATTTGATAGGTATTTGTTCTTCTAGTG
virilis ATAAGCGCCAGAAAATCCTTGATCTTGA------------GCTGCGTTTCTAGT----------------------AAGCCGCTTAAAAA---TCA------------------------
mojavensis ATAAGCAGCATCAAGTCCTTGATCTTGA------------GTTGCGTTTCTAGC------------------------------------------------------------------
grimshawi ATAAGCGTTTGAAAATCCTTGATCTTGAGCTGCTGCTGCTGCTGCGTTTCAAGC-------TGATGTTTACTCTATAAGCCGCTTAAAAA------AAGCGCGTTTT--TTTCTTAA---
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GACGTTTAACTTA---GCA------T---AGTGCAAAAATAAAA------CGACGAAAGATAAGACCCC----GCTCATAGCAAAAAGTT------GCGCGTCAA---GCCCAGCGGGAA
simulans GACGTTTAATTTA---GCA------T---AGTGCAAGAATAAAA------CAACGAAAGATAAGACCCC----GCTCATAATAAAAAGTT------GCGCGTCAA---GTCCAGTGGGAA
sechellia GACGTTTAATTTA---GCA------T---AGTGCAAGAATAAAA------CAACGAAAGATAAGACCCC----GCTCATAATAAAAAGTT------GCGCGTCAA---GTCCAGTGGGAA
yakuba AGCGTTTAGCTTA---GCA------T---AGTGCAAG----AAA------CAAAGATTGATAAGAGCCCGA--GTTCGTAGCGAAAAGTT------GCGCGTCGA---GCCCAGCGGGCA
erecta AGCGTTTAGCTTA---GCA------T---AGTGCAAGAATAAAA------CAAAGATTGATAAGAACTCGA--GTTCATAACAAAAAGTT------GCGCGTCGA---GCCCAGCGGGCA
ananassae AAAATCGAGCTTA---GCAGCGGCGC---AGTGCAAGTATTGAA------CA---GTTGATAAGAGTGAGAGCACTTGGAGCGAAAAGTTTCTGACACGCAACAATTGGCCCGGCGG---
pseudoobscura GGAATATGGCCCA---GCA------TCGAAGTGCAGGAAAGAAACGGGAGCAGAAATTGATAAGCAAGCAAGTGCCTTTAAACTAAACCT------GAGCTTCAG---AGCCGACGGGCG
persimilis GGAATATGGCTCA---GCA------TCGAAGTGCAGGAAAGAAACGGGAGCAGAAATTGATAAGCAAGCCAGTGCCTTTAAACTAAACCT------GAGCTTCAG---AGCCGACGGGCG
virilis -ATGTCTATGTCAGATGCA------A---GAAATAGCAATAAGG------CAGT---TGATAAGAGTCCCA--CCTCTAAAAAAAAAGTT------TCCCTGCAC---TGCCGGCGGG--
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi -TTTTCTGCCTCTATTAAA------A---AGAGAAGGAGCGAGG------CCGC-----------ATCTCA--AATGCAAGAAATA---------------GCAA---------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ACGTTTCTGAT----ATGA----TAAGATA-------ATCAGAGTC-GCAAAATATACATAATAATTTGCCAATTATACATCTGGGATTTACATATTTAAAGATAAAACAGCAAACTGAC
simulans ACGTTTCTGAT----ATAA----TAAGATA-------ATCAGCTTC-GAAAAATATTCAACACAATTTGCCAATTATACATCTGGGATTTACATATTTAGAGATAAAACAGCAAACTGAC
sechellia ACGTTTCTGAT----ATAA----TAAGATA-------ATCAGCTTC-GAAAAATATACAACACAATTTGCCAATTATACATCTGGGATTTACATATTTAGAGATAAAACAGCAAACTGAC
yakuba ACGTTTCTGAT----ATGA----TAAGAAA-------AACAGCATC-GCAAAAAATTCAAAATCATTTTCCAATTATACATCTGGGAGTTAAATTT----AAAT-AAACAGCAAAGTAAC
erecta ACGCTTCTGAT----ATGA----TAAT----------GACAGCATC-GCAAAATATACAAAATCAATTTTCAATTATACATCTGGGAGTTACATTTTTGGAGATAAAACAGCAAACTTAC
ananassae -CACCGCTAATCAGAATGA----TAAG--A-------GCCAGCTTC-AGAAAAAG---------GTTCGGCAATTGTACGCCTGGGCGTT------------------------------
pseudoobscura ACGCTATTTA-----ATGA----TAAGAAAAAGGAACGCCTGAACCAAAAACCCACAAAAAACGCGTGCCTAATTATACAACAGGGAGCCATCTGCATGCTGATAAAACAGTGAAAAGAC
persimilis ACGCTATTTA-----ATGA----TAAGAGAAAAGAACGCCTGAAAC-AAAACCCACAAAAAACGCGTGCCTAATTATACAACAGGGAGCCATCTGCATGCTGATAAAACAGTGAAAAGAC
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------CTGAT----ATGAGTTCTCAAAAA-------ATAA------ACAAAATATAAATAAAAGTT-----------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster AAT---GGTGGGTGGTGCGCATGAAAATTTGTTTTACAACT----------------TGACACATTTTCATGGTAAAAAGCAGGAAGCAG-CATTAGTGGAATGGTAATTATTTA-----
simulans AAT---GGTGGGTGGTGCGCATGAAAAATTGGTTTTCAACT----------------TGACAAATTTTCATGGTAAAAAGCAGAAAGCAG-CACTAGTGGGATAAGAAGTATTTAATACA
sechellia AAT---GGTGGGTGGTGCGCATGAAAAATTGGTTTTCAACT----------------TGACAAATTTTCATGGTAAAAAGCAGAAAGCAG-CACTAGTGGGATAAGAAGTATTTAATACA
yakuba AAT---GGTGGAGTGTGCACATCAAAAAATGTTTTACAAAT--ATTCAA---------AAAGGAACTCCACGTGAAAGGTAAAAAAGCAG-CATTAGTT--ATTGGAAATAGTAAAAACA
erecta AAT---GGTGGATGATGCGCATTAAAATACATTTTACAAATTATTTTAAAATTTTGCTAAAGAAATTTAAAGTAGAAGACAAATATTTAATCATTATTTGAATGGGAAATA---------
ananassae ------------------------------------------------------------------------------------------------------------------------
pseudoobscura AGTCTCTGTTGGGAGTGCGTTGAAAAA------------------------------------------------------------------------------------TTTAATCC-
persimilis AGTCTCTGTTGGGAGTGCGTTGAAAAA------------------------------------------------------------------------------------TTTAATCC-
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBRRRRRRRRMMMMMMMMRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRR
melanogaster ------------------------------ATTCAGGTTAATCAAGATACGCGTAAATGTTTTAAAGGTAAAGGTTTTCCTATTGCACCACACTCGC-AAAGT---------ATCCTAGC
simulans TAACACAGTTAGAAAAAAACAAATATCGCTATTCGGGTTAATCGAGATACGCGGAAATGC------------GGTTTTCCTATTGCACCACACACGC-CAAGT---------ATCCTAGC
sechellia TAACACAGTTAGAAAAAAACAAATATCGCTATTCGGGTTAATCGAGATACGCGGAAATGC------------GGTTTTCCTATTGCACCACACACGC-CAAGT---------ATCCTAGC
yakuba TAATAAAG----------------------------GTTAATCAAGATATGCGGAACTGC------------GGTTTTCCTATTGCACCACACACGC-AAAGT---------ATCCTAGC
erecta ------------------------------------GTTAATCAAGATATGCGGAACTGC------------GGTTTTCCTTTTGCACCACACACCTAAAAGT---------ATCCTAGC
ananassae ----------------------------------AGATTAATCTTGATCTGCGGAACTGC------------GGTTGGCACGTTGCGCCATAGGCTT-GGAAC---------ATCCTGGC
pseudoobscura ----------------------------------GGATTAATCT-GATCTGCGGAACTGC------------GGTTTACTTATTGCGCCACAAGATT-TAAAA---------ATCCTGGC
persimilis ----------------------------------GGATTAATCT-GATCTGCGGAACTGC------------GGCTTACTTATTGCGCCACAAGATT-TAAAA---------ATCCTGGC
virilis ---------------------------------------AATCAAAATCCGCGGAACTAT------------GGCT-GCTTATTGCGCCACAAATCT-G----------TAGATCCTGGC
mojavensis ----------------------------------------------------------------------------TGCTTATTGCGCCACAAATCT-GCAGATCCTGCCAGATCCTGGC
grimshawi ----------------------------------------------------------------------------TGCTTATTGCGCCACAAATCT-GTAGATCCTGGC--TTCCTGGC
Summary RRBBBBBBBRRRRRRRRRRRRRRRRBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GCCTTAT----------GTGGATCAATT-------TAAATCGGGATCC-TAAGTTAACTATAATCCAG--GCTTAATCACTGGATCAATAACTAAGTAGCATTTTCCGG--------GAT
simulans GCCTAAT----------GAGAATGAAGT-------CAAATCGGGATCC-TAAGTTAACTATAATCCCA--GCTTAATCACTGGATCAGTAGCTAAGTAGCATTTTCCGG--------GAT
sechellia GCCTAAT----------GAGAATGAAGT-------CAAATCGGGATCC-TAAGTTAACTATAATCCCA--GCTTAATCACTGGATCAGTAGCTAAGTAGCATTTTCCGG--------GAT
yakuba GCCTAAT----------GTGGATCAAGT-------CAAATCGGGCTCC-TAAGTTAACTATAATCCCA--GCTTAATCACTGGATCAGTAGCTAAGTAGCATTTTCCGG--------AAT
erecta GCCTAAT----------GTGGATCAAGT-------CAAATCGGGCTCC-TAAGTTAACTATAATCCCA--ACTTAATCACTGGATCAGTAGCTAAGTAGCATTTTCCGG--------AAT
ananassae GCTTGTA----------GTAGATCAAGA-------ATAATCGGGCTCCTTAAGTTAACTATAATCCAA--GTATGATCACTGGATCAGTGGCTAAGCAACATGTTCCGG--------GGT
pseudoobscura GC-TAATCTTAGTAGTAGTGAAGTAGAT-------GTAATCGGGCTCCTTTAGTTAACTATAATCCTT--GACTGATCACTGGATCAGTGGCTAAGCAACATTTTCCGG--------GAC
persimilis GC-TAATCTTAGTAGTAGTGAAGTAGAT-------GTAATCGGGCTCCTTTAGTTAACTATAATCCTT--GACTGATCACTGGATCAGTGGCTAAGCAACATTTTCCGG--------GAC
virilis GC-TAATCGCAGCAG--TCGGGTC-GATCGCAACGCTAATCGCACGCCTTAAGTTAACTATAATCCAATGCATGATCCACT-----------------------CGCCAGTGCTT-CGAG
mojavensis GC-TAATCGCAGCGC--T---------------CGCTAATCGCACGCCTTAAGTTAACTATAATCCAA--CATGATCCACT---TCA--CGATCGGCCGCTCGACGCGGATGCC------
grimshawi GC-TAATCACAGCAGA-TCAGCTCAGATCT---CGCTAATCGCACGCCTTAAGTTAACTATAATCCAA--GCTGATCCACT--------CGTTAAGCAATATGTTCCGGGCACTCGCGAC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster G-GAAA--T-ATGAAGTTACCTGCATATGCCTACCGATCCTGA--------------------------------AAACTGCTTTAACTTAA-------------------T-----CGA
simulans G-AAAA--T-ATGGAGTTACCTGAATATGTCTAGCGATCCTGA--------------------------------TAACTGCTTTAACTTAA-------------------T-----CGA
sechellia G-AAAA--T-ATGGAGTTACCTGAATATGTCTAGCGATCCTGA--------------------------------TAACTGCTTTAACTTAA-------------------T-----CGA
yakuba G-GAAA--T-ATGGAGCTACCTGCTTAAGTCTACCGATCTTGA--------------------------------CAACTGTTTTAACTTAA-------------------T-----CGT
erecta G-GAAA--T-ATGGAGCTACCTGCTTAAGTCTACCAATCATGA--------------------------------CAACTGCTTTAACTTAA-------------------T-----CGT
ananassae TCGAGA--C-ACCCA-CTACCTGTGCAGGTCAGCTACTCGGAC--------------------------------CAACTGGTTTAGCTTAAT-CCAGGGATTTAACTTTTT-----CGC
pseudoobscura C-GAAA--TGATCAATTTACCTGCCTTGGCCCACTGCCCACTG---------GTCCACTGATCATTTGAACAGTTTAACTGGTATAACTTAAT-CCCAGGATTAAACTTTTT-----CTT
persimilis C-GAAA--TGATCAATTTACCTGCCCTGGCCCACTGGCCACTGCAGTCGGCAGTCCACTGATCATTTGAACATTTTAACTGGTATAACTTAAT-CCCAGGATTAAACTTTTT-----CTT
virilis T-CGGA--T-ACCTGGGCAAGT----------GTTGGTCAACG-------------------------------CCAACTGTTTTTGCTTAAT-CCCGGGCTTTAACTTTTT-----GCA
mojavensis T-CGGA--T-ACCTGGACGTGT----------GT---TCCTGG-------------------------------CCAACTGTTTTTGCTTAATCCCCGGGCTTTAACTTTTT-----GCA
grimshawi T-CTTACCT-GCTTGCGCAGGTTCAACGGCTGAT---TCAACG-------------------------------CCAACTGTTTTTACTTAATCCGGGGGCTTTAATTTTTTTATTGGCA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBB
melanogaster CA----TGCATGATCATAAAA--A---GCAAT-TTGCTACAATTTA-------TATTTTTT------TGC-----------TTTTCCTTCTTT--T-----AAGCAT----CTGGGAT-C
simulans CA----TGCATGATCATAAAA--A---GCAAT-TTGCTACAATTTA-------TATTTTTT------TGC-----------TTTTACTTCTTT--T-----AAGCAG----CTGGGAT-C
sechellia CA----TGCATGATCATAAAA--A---GCAAT-TTGCTACAATTTA-------TATTTTTT------TGC-----------TTTTACTTCTTT--T-----AAGCAG----CTGGGAT-C
yakuba CA----TGCATGGTCATAAAA--A---GCAAT-TTGCTACAATTTA-------TATTTTCC----TATGC-----------TTTTACCTCTTT--A-----GAGCAG----ATGGGAC-C
erecta CA----TACATGATCATAAAT--T---GCAAT-TTGCTACAATTTA-------TATTTTCT----TATGC-----------TTTTACCTCTTT--A-----AAGCAG----ATGGGAC-C
ananassae CA----TGCCTGCTAATAAAA--A---GCAATAACGCTACAATTTC-------TTTTTACTCGGCCAGGC-----------TTTTACCTCATT--C-----CTGCAG----CTGTTTC-C
pseudoobscura CA----TGCCTGATAATAAAA--A---AAAAA-TTGGTACAATTCG-------TTTGTTTT-GCTCAGGC-----------TTTTACCTCTTT--T-----GAGCAG----CTGTCCC-T
persimilis CA----TGCCTGATAATAAAA--A---AAAAA-TTGGTACAATTCG-------TTTGTTTT-GCTCAGGC-----------TTTTACCTCTTT--T-----GAGCAG----CTGTCCC-T
virilis TG---TCGGATTATAATAAAA--ATGTGAATA-TTGCGACAATTAT-------TTTTTTTT------A-------------TTTTACCTCTTTACTCCGCGAAGCAG----CTGACTC-C
mojavensis CTCGCCCGGATTATAATAAAA--ATTTGAATA-TTGCGACAATTAT-------TTTTTGCT------GGCTCGGCAGACGCTTTTACCTCTTTACT-----ATGCAG----CTGACTCGC
grimshawi GA----TGGATTATAATAAACATATTTGAATA-TTGCCACAGTTTTTATATTGTTTTTTCT------AGTC----------TTTTACCTCTTT--TACGCCGTGCAGCTGACTGACTC-C
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -TGGATCAGAAAAG-------------------------AAAAA----GTGTAACGCCTACCTTCAGAAACGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
simulans -TGGATCAGAAAAG-------------------------AAAAA----GTGTAACGCCTACCTTCAGAAACGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
sechellia -TGGATCAGAAAAG-------------------------AAAAA----GTGTAACGCCTACCTTCAGAAACGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
yakuba -TGGATTAGGAAAG-------------------------AAAAA----ATGTTACGTCTACCTTCAGAAACGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
erecta -TGGATTAGGAAGG-------------------------AAAAA----ATGTTACGTCTACCTTCAGAAGCGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
ananassae ACGGATTAGGGTAG-------------------------AAAAA--ACATGTTACGTCTACCTCCACAAACGGATTAAATTTTTT------GAAA-CATATAAGT-CAGTCTTAAGCATG
pseudoobscura -CGGATTACGAGAG-------------------------AGAAAAAACACTTTGAGTCTACCTCCAAAGACGGATTAAATTTTTT------CAAA-CAAATAAGT-CAGTCTTAAGCATG
persimilis -CGGATTACGAGAG-------------------------AGAAAAAACACATTGAGTCTACCTCCAGAGACGGATTAAATTTTTT------CAAA-CAAATAAGT-CAGTCTTAAGCATG
virilis -CGGATTAGTAGAGACGACTGCGCAGAGGGAACAGAGA-AAAAA---CACGTTGCGCCTACCTCGGAGGGCGGATTAAATTTTTT------CAAC-AAAATAAGT-CAGTCTTAAGCACG
mojavensis -CGGATTAGTCGAGCAGACAGCGAACGAAAAAAAGAAACGAAAA---CACGTTGCGCCTACCTCG--AGGCGGATTAAATTTTTTTGTTCGCAACAAAAATAAGTCCAGTGTTAAGCACG
grimshawi -CGGATTAGTGGAG--GAGTGCAAA--------------AAAAA---CACGTTGCGCCTACCTCG---GGCGGATTAAATTTTTT------CAGC-AAAATAAGT-CAGTGTTAAGCACG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GTGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCTGTTAATCTCCGGCTTAGAGCGCGACGCG--TTTTTTCGCGACT----CCGCC
simulans GCGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCTGTTAATCTCCGGCTTAGAGCGCGACGCG--TTTTTTCGCGACT----CCGCC
sechellia GCGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCTGTTAATCTCCGGCTTAGAGCGCGACGCG--TTTTTTCGCGACT----CCGCC
yakuba GTGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCGGTTAATCTCCGGCTTAGAGCGCGACGCG-TTTTTTTCGCGACT----CCTTC
erecta GTGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCGCTTAATCTCCGGCTTAGAGCGCGACGCG-TTTTTTTCGCGACA----CCGTC
ananassae GCGATTA-AGCTTGATCCCCTGCG----AAGGGGCGTAATATTTACGGATTTTCCTCTAAATCCTTCGGCTAATCTCCGGCTTAGAGCGCGGCGCGATTTTTTTCGCGGCT----TGGCC
pseudoobscura GCGATTA-AGCTTGATCCCCTGC-----AATGGGCGTAATATTGATGGATTTTCCTTTAAATCCTTATCCTAATCTCCGGCTTAGAGAGCGGCGCGATTTTTTTCGCGGCT----CGGTC
persimilis GCGATTA-AGCTTGATCCCCTGC-----AATGGGCGTAATATTGATGGATTTTCCTTTAAATCCTTATCCTAATCTCCGGCTTAGAGAGCGGCGCGATTTTTTTCGCGGCT----CGGTC
virilis GCGATTAGAGCTTGATCCTCCGGG--GACATGGGCGTAATATTGATGGATTTTCCTCTAAATCCGTCAGCTAATCTCCGGCTTAGCGCGCGACGCGATTTTTTTCGCGACT----GCCA-
mojavensis GCGATTAGAGCTTGATCCTCAAGG--GCCGTGGGCGTAATATTGATGGATTTTCCTCTAAATCCGTCGGCTAATCTCCGGCTTAACGTGCATCGCGATTTTTTTCGCGACT----GCAAC
grimshawi GCGATTAGAGCTTGATCCTCCGCGCAGACATGGGCGTAATATTGATGGATTTTCCTCTAAATCCGTCGGCTAATCTCCGGCTTAGCGTGCGACGCGATTTTTTTCGCGACTCTCCGCGCA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBB
melanogaster TGCATTG-----------TTTT-------------------------------TTTTTTCAGTTTCTTCAATTCGCAAGAAGGCA---------GGCCTATGGACCGAATGAGGATCATA
simulans TGCATTG------------TTT-------------------------------TTTTTTCAGTTTCTTCAATTCGCAAGAAGGCA---------GGTCTATGGACCGAATGAGGATCATA
sechellia TGCATTG-----------TTTT-------------------------------TTTTTTCAGTTTCTTCAATTCGCAAGAAGGCA---------GGTCTATGGACCGAATGAGGATCATA
yakuba TGCATTG----------------------------------------------TTTTTTCACTTTCTTCAATTCGCAAGAAGGCA---------GGCCTAAGAACCGAATGAGGATCATA
erecta TGCATTGTTT----TTTTTTTT-------------------------------TTTTTTCATTTTCTTCAATTCTCAAGAAGGCA---------GGCCCATGGACGGAATGAGGATCATA
ananassae TGCATTG----------TTTTT-------------------------------TTTGTTCGTTTTCTTCGATTCGCAAGAAAGCA---------GGCCTCTGGGCC-AATGAGGATCATA
pseudoobscura TGTTTTGTTTTTTCTTTTCTTT-------------------------------CCTTTTCCTTTTCTTCAATTCGCAAGAACGCA---------GGCCTTTGGGCC-AATGAGGATCATA
persimilis TGTTTTGTTTTTTCTTTTCTTT-------------------------------CCTTTTCCTTTTCTTCAATTCGCAAGAACGCA---------GGCCTTTGGGCC-AATGAGGATCATA
virilis --------------------GT-------------------------------TTTGTTGTGTTTCTTTTTTTCGCGAGAAGGCAACTCGCTCTGACTGACTGACCG-GCGAGGATCATA
mojavensis TATTTTG------------TGT-------------------------------TTTGTCTAGTTTTTTTTTTTCGCTAGAAGGCAACTCGGTCTG-TTGACTGACTGCGCGAGGATCATA
grimshawi CATTGTG------------TGTGTGTGTGCGGGTGTGTGTGTGTGTGGGTGTGTGTGTGCTATGTTTTTTTTTCGCTAGAAGGCAAATCGAGCTGACTGCTCTGCTGACTGAGGATCATA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ATTATGGAATTCCTAAATAAACTAAGAAG--------------GGCAGTCGGCATA-GTAT------TGATCTACCTGTAA------------GCGTGGGT---------TCTATCTTTG
simulans ATTATGGAATTCCTAAATACACTAAGAAG--------------GGCAGTCGGCATA-GTAT------TTATCTACCTGTAA------------GCGTGGGT---------TCCGTCTTTG
sechellia ATTATGGAATTCCTAAATACACTAAGAAG--------------GGCAGTCGGCATA-GTAT------TTATCTACCTGTAA------------GCGTGGGT---------TCTGTCTTTG
yakuba ATTATGGAATTCCTAAATACACTAAGGAG--------------GGCAGTCGACATG-GCGT------TGATCTACCTGTAA------------GCGTGGGT---------TCCGTCTTTG
erecta ATTATGGAATTCCTAAATACACTAAGGAG--------------GGCAGTCGATAAG-GCAT------TGATCTACCTGTAA------------GCGTGGGT---------TCCGTCTTTG
ananassae ATTATGGAATTCCTAAATAAACGAGGAAG--------------GGCAGACGGCGAGCGCGTCGA--CTGACCTACCTGTAA------------GCGTGGGTAGGAAGGACTCTG-CTCTA
pseudoobscura ATTATGGAATTCCAAAATACACTGAGAAA--------------GGCAGACAGAGAGAGCACTGAAGCTCAGCTACCTGTAA------------GCGTGGGT---------ATCGTATCCT
persimilis ATTATGGAATTCCAAAATACACTGAGAAA--------------GGCAGACAGAGAGAGCACTGAAGCTCAGCTACCTGTAA------------GCGTGGGT---------ATCGTATCCT
virilis ATTATGGAATTCCTAAACA-----AGAGAGAGAGAGAGACGAGGACGAGCATGAAGTACAC-GAGCGTGTGCTACCTGTAA------------GCGTGGGT---------TACCTCTTTG
mojavensis ATTATGGAATTCCTAAACA-----AGAGA--------------GCCGAGCAGCGAGTGCGCTTAGCGTGTGCTACCTGTAAGCGTGGATGTGGGCGTGGGT---------TACCTCTTTG
grimshawi ATTATGGAATTCCTAAAGA-----AGAGA--------------AGCCGCCAGAAGTAGTGC-TGGCG-AAGCTACCTGTAA------------GCGTGGGT---------TACCTCTTTG
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -CCCCTCGCATTCGAGACTCTCT-AG---------TCACAGGTAG----------------------------------------AC----CAGCCTTGAGTT---CGTC-GGCAATTAA
simulans -CCCCTTGAATCCGAGACTCTTT-AG---------TCCCAGGTAGT------CAGT---------------------------ATAC----CAGCCTTGAGTT---CGTC-GGCAATTAA
sechellia -CCCCTTGAATCCGAGACTCTTT-AG---------TCCCAGGTAGT------CAGT---------------------------ATAC----CAGCCTTGAGTT---CGTC-GGCAATTAA
yakuba -CCCCTTGAATTCGAGACTCTCT-GG---------TCACAGGTAGT------CAAT---------------------------ATTC----CAGCCTTGAGAT---CGTC-GGCAATTAA
erecta -CCCCTTAAATTCGAGACTCTCT-AG---------TCACAGGTAGT-----CCCGT---------------------------ATTC----CAGCCTTGAGCT---CGTC-GGCAATTAA
ananassae -CTCT----GTCCCAGGCTTGCC-GG------CTACCACAGGTAGC------CAGA-----------------------------AC----CAGCCTTGAGTT----GCC-GGCAATTAA
pseudoobscura -CT---------------TCGCC-TA---------TCACAGGTAAC------CAGACCAGACCGGACCAGACT----------AGAC----CAGCCTTGAGTT----GTT-GGCAATTAA
persimilis -CT---------------TCGCC-TA---------TCACAGGTAAC------CAGACCAGACCGGACCAGACTTGACCAGACCAGAC----CAGCCTTGAGTT----GTT-GGCAATTAA
virilis -CC-----------AGGTC-TAG-CGCTGACCAGTTGCCAGGTAGC---GCTCGGCCCT------------------------TGGC----CAGCCTTGAGGTCACCGTTTGGCAATTAA
mojavensis -CC-----------AGGTCATCG-CG----------GCCAGGTAGCCTGGCCTGGCTGC------------------------TTGCTGCTCGGCCTGGAGGTCAGCGTTTGGCAATTAA
grimshawi CCC-----------AGGTCGTAGTCGTAGACGAAGTTTCAGGTAGT------CGG-----------------------------AGC----CGGCCTGGAGGT---CGCTGGGCAATTAA
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GAAGTCAAATTTCTCTTAAAAA------------CAA---CAAAAAAT-GTCAAA-------GTAAAAACAATGCAAAAAATA-TGT-GTA-ACTGAACTAAATCCGGCTTAGGA-----
simulans GAAGTCAAATTTCTCTTAAAAA------------CAA---CAAAAAAT-GTCAAA-------GTAAAAACAATGCAAAAAATA-TGT-GTA-ACTGAACTAAATCCGGCTTAGGG-----
sechellia GAAGTCAAATTTCTCTTAAAAA------------CAA---CAAAAAAT-GTCAAA-------GTAAAAACAATGCAAAAAATA-TGT-GTA-ACTGAACTAAATCCGGCTTAGGG-----
yakuba GAAGTCAAATTTCACTTAAAAA------------CAA----AAAAAAT-GTCAAA-------GGAAAAACAATGCAAAAAATA-TGC-GTA-ACTGAACTAAATCCGGCTTAGGA-----
erecta GAAGTCAAATTTCACTTAAAAA------------CAA---CAAAAAAT-GTCAAA-------GGAAAAACAATGCAAAAAATA-TGC-GTA-ACTGAACTAAATCCGGCTTAGGA-----
ananassae GAAGTCAAATTTCACTTAAAAA------------CAAAA-CAAAAAATCGCCTAA-------CGAAAAACAATGCAAAAAATG-TCC-CTAGACTGAACTAAATCCGGCTTAGGAAAGTC
pseudoobscura GAAGTCAAATTTCGCTTAAAAA------------CCAAAGAAAAAAAG-ATCGCA-------GCAAAAACAAAGCAAAAAATGTTGC-AGA-GCTGAACTAAATCCGGATTAAGA---AT
persimilis GAAGTCAAATTTCGCTTAAAAA------------CCAAAGAAAAAAAG-ATCGCA-------GCAAAAACAAAGCAAAAAATGTTGC-AGA-GCTGAACTAAATCCGGATTAAGA---AT
virilis GAAGTCAATTTTCGGCCAAAAA------------AAAAG-ACAAAAAG-ACGGCGATCACTGGCAAAAACAATGCAAAAAATG-TGCTAAA-GCTGAACTAAATCCGGCTTAAGA---AT
mojavensis GAAGTCAATTTTCGACCAAAAAATAAAATAAAATAAAAG-ACAAAAAG-ATTGTG-----------AGACAATGCAAAAAATG-TGCTAAA-GCTGAACTAAATCCGGCTTAAGA---AT
grimshawi GAAGTCAATTTTAGCCAAGAAA------------AAAAT-ACAAAAAG-ACA-----------------------AAAAAATG-TGC-AAA-GCTGAACTAAATCCGGCTTAAGA---AT
Summary BBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster -------------------------TTCTTGCGTCATAAACATGACTAGGGAGCCATTAAA-----------------------------------ATTTGATAATTTGCATGTCACTTG
simulans -------------------------ATCTTGCGTCATAAACATGACTAGGCAGCCAATAAA-----------------------------------ATTTGATCATTTGCATGTCACTTC
sechellia -------------------------ATCTTGCGTCATAAACATGACTAGGCAGCCAATAAA-----------------------------------ATTTGATCATTTGCATGTCACTTC
yakuba -------------------------TTCTTGCATCATAAACATGGCCAGGCAGCCTTTAAA-----------------------------------ATTTGATCATTTGCATGTCACTCT
erecta -------------------------TCCTTCCATAATAAACATGGCCAGCCAGTCTTTCAA-----------------------------------ATTTGATCGTTTGCATGTCACTCT
ananassae GATTG------------TCAGCGGGTCCTTGCATCATCAGCAAGGTCAGACAGCCGTCCAG-----------------------------------TTCTGATCATTTGCATGCAGC--A
pseudoobscura GGCTG------------TCCTAAGGTCTTTGCATCATAAACAAGGTCAGGATTCCTAGCGG-----------------------------------CATTGTGCATTTGCATATTACCAA
persimilis GGCTG------------TCCTAAGGTCCTTGCATCATAAACAAGGTCAGGATTCCTAGCGG-----------------------------------CATTGTGCATTTGCATATTACCAA
virilis GACAACGCCGGGCAATAGGCC--AGGTTTTGCGTCATAAACGTTGCCGTCACCCACTCTCACTCCCTCGCTCTCTTTCTCTCGCTCTCTCGCCCTTCTCTGCGCATTTGCAT--------
mojavensis G----------------GGCC--AAGTTTTGCGTCATAAA--------------------------------------------------------------------------------
grimshawi GACAAC-----------GGCCAAAGGACTTGCGTCATAAACTCTGCAGAGAGAGAGAGAAA---------------------------------TGCTCTTTGCATTTGCATGC------
Summary BBBBBBRRRRRRRRBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TGCACCGTAAA--CGAAGCCAACAC----A---TCG------------------------GCTGAAA-------------------------------CCCAGCGTCATTTATGCTATGC
simulans TGCACCGTAAA--CGCAGCCGACAC----A---TCG------------------------CCTGAAA-------------------------------CTCAGCGTCATT-------AGC
sechellia TGCACCGTAAA--CGCAGCCGACAC----A---TCG------------------------CCTGAAA-------------------------------CTCAGCGTCATT-------AGC
yakuba TGCACCGTAAA--CGAAACCGCCAC----A---TAA------------------------GTTGAAA-------------------------------CTCAGCGTTATT-------AGC
erecta TGCACCGTAAA--CGAAGTCGCCAC----A---TCG------------------------GTTGAAA-------------------------------CTCAGCGGCTTT-------AGC
ananassae AGGATCGTAAA--CGAATTCGCCGC----GTCCTCG------------------------CCGCCGA-------------------------------GGCAGCCTGGCC-------GGC
pseudoobscura CGGATCGTAAA--CGAATTCGCCGCGAAAA---CAG------------------------CCTCACATATGTATGTACCGACCATACCAACAATACCAACCACCCTAGTC-------AGC
persimilis CGGATCGTAAA--CGAATTCGCCGCGAAAA---CAG------------------------CCTCACA----TATGTACCGACCATACCAACAATACCAACCACCCTAGTC-------AGC
virilis --GATCATAAAATCGAATTCGCCGC----A---GCG------------------------CCGAGAA-------------------------------TTC--TCTCCTT-------AGT
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi --GATCATAAAAATAAATTCGCCGC----A---GAGAGCGACAGAGAGCGAGTGAGAGTTCTAAGGT-------------------------------CTC--TCTCCTT-------CTC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster TATCT-----CACTCTTTTGCATA------------------ATTTTTT---TAA----ATTATTGACTTGTCTTTTTTAC-GAATGCAA-AGG------------------AAGTA---
simulans CATCT-----CACTCTTTCGCATA------------------ACTTTTT---AAA----ATTATTGACTTGTCTTTTTTAC-GAATGCAA-AGG------------------AAGTC---
sechellia CATCT-----CACTCTTTCGCATA------------------ACTTTTT---AAA----ATTATTGACTTGTCTTTTTTAC-GAATGCAA-AGG------------------AAGTC---
yakuba TATCT-----CACTCTTTCGCACC------------------ACTTTTT---TAA----AATTTTGACTTGTCTTTTTTAC-GAATGCAA-AGGAAAGAATTTTTTACAAGGAAGTA---
erecta TATCT-----CACTCCTTCGCACA------------------CCTTTTT---TAA----ATAATTGACTTGTCTTTTTTAC-GAATGCAA-AGA---------TGTAC----AAGTA---
ananassae --TCT-----CCTTTTTTCCCACACTTTTTATGCCGCCCTTGACTTTTT---TAA---TATGGGTGGTTTGACTTTTTTACTGGACATCG-CCG------------------ACGTCTAG
pseudoobscura TGCCT-----CGTCCTTTCCAACAGTTTATAGTCTGGCCTTGACTTTTTACGAAA----GTGAGCGGTTTGACTTTTTTACCGTCTGTTG-ATG------------------A-------
persimilis TGCCT-----CGTCCTTTCCAACAGTTTATAGTCTGGCCTTGACTTTTTACGAAA----GTGCTCGGTTTGACTTTTTTACCGTCTGTTG-ATG------------------A-------
virilis TTTTT-----CTTACCTTT------------------------TTTATT---TGT----GTCCTTGACTG---TTTTTAAT-GTGCGCGGTTTG------------------A-------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi TCTCTGCAGGCTCGCTCTC---TG------------------ATTTATT---TGTATTCGTCCTTGACTTG-CTGCCTAAT-GAACGCGGTTTG------------------A-------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBB
melanogaster CTTGTGTACTTCCGTTTTTCA--------AAGTCCGATTTTATTATCT-----------------ACCTGCAATTTATAATGACAACCAAG-TTTTTAA---------------------
simulans CTTGTGTACTTCCGTTTTTTA--------AAGTCCGATTTTATTATCT-----------------ACCTGTAATCGAGAATGACAAACAAGTTTTTTAA---------------------
sechellia CTTGTGTACTTCCGTTTTTTA--------AAGTCCGATTTTATTATCT-----------------ACCTGTAATCGATAATGACAAACAAGTTTTTTAA---------------------
yakuba CTTGTGTACTTCCGTTTTTTA--------ATGGCCAATTTTATTATTAGACTTTTT---------ACCTGCTATTTATTATGGCTAACAAGTTTTTTAA---------------------
erecta CTTGTGTACTTCCGTTTTTTA--------ACGTCCGATTTTATTATTAGACACTAGTCAGGTAAAAACTGTGATTTATTATGGCTAAGAAGTTTTTTAA---------------------
ananassae CAGGAGTACTTCCGTTTTTTACATTTTTTATGGCGGATCTGGCTACCTG----------------ACAGTTTATGGACGTTGTCC-----GTTTTTTAA---------------------
pseudoobscura CTTG----CTTCCGCACTTTA--------AAGTT---TTTTATGATTAGTCCT------------ACCTGGGGTTTATGACTATTTAGA-GTTTTTTAA---------------------
persimilis CTTG----CTTCCGCACTTTA--------AAGTT---TTTTATGATTAGTCCT------------ACCTGGGGTTTATGACTATTTAGA-GTTTTTTAA---------------------
virilis CTTTTTT-GCCCAGTTTTTTA--------CGGTTGTCGTTTCT----------------------TCCTTCC------------------GTTTTTTAG---------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi CTTTTTTGGTCCCGTTTTTTA--------CGAGTGTCGTTTTTGTTTTAAGCG------------CACTTCC------------------GTTTTTTAGACATGACTTTTTTTTTTGACC
Summary BBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBB
melanogaster ----------CAT-TCCAAAACGTGGTT-TTTTG-AGTTCAATAAGCTTCA--------------------TTTTTTAAAGGCT------------------------------CTTTTC
simulans ----------CAT-TGCCAAACTTCGTTGTTTTGTAGTTCAATAAGCTTCA--------------------TTTTTTAAGCGCTCTTTAAAATCATCCATTTTATGAATATTTACTTTTC
sechellia ----------CAT-TGCCAAACTTCGTTGTTTTGTAGTTCAATAAGCTTCA--------------------TTTTTTAAGCGCTCTTTAAAATCATCCATTTTATGGATATTTACTTTTC
yakuba ----------CTT-TCCGAATCATGGTTGTTTTAAAGGTCAATAATCAACATCTAGAATATAA----ACATTTTTGTAAACGCTCTTTCAAA-------------AAATATTAACTACTC
erecta ----------CTT-TCCGCACCCTGGTTCTCATATCGTTCAATAATTATCACGTAGAATAGTA----AACGCTTTGTAAAGGCTCTTTTAAATCATTTATTTTAGGACTATTTACTTCTC
ananassae ----------C---------------TGGGATAGTACTTCGAAGCCCTTCG----------TA----AATATTTTTGAA--------TGAAAGCCTCC-------GCATATTAG---TAC
pseudoobscura ----------CCG-GCCAAACTGGAAGAGTTTT---------------------------------------------------------------------------------------
persimilis ----------CCG-GCCAAACTGGAAGAGTTTT----------AGGTTCCGTGAAAAATGTAAC-GCAGTCTTCTTGAA--------TGGAA----------------------CGAACC
virilis ----------CCGAGTTTTAGTTTCGTTTTTTT------------------------ATGATACTACCTGGTTTTACAATTGCGCT--------------------------------TT
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi AGGTTGTTACCTGATTTTATGATTGGCTGTTTT------------------------GT--TGCTTTGCTGTTTTTTAATGAGTCT----------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBMMMMMMMMBBBBBBBBRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBB
melanogaster GAACCACATTAACATTTGCGG-TTACGTTTTTGTAGAAATTTTCCATAGCTGCATAAAGGTACAAGT-------TTCATTTATTTGATGGGAAAATG-AAT---TAGAGACCAGCACGAT
simulans AAACCACATTAACGTTTGCTGTTTACGTTT---------TTTTTCATATCTGCAAAAAGCTACAAGT-------ATAATTTATTTGATAGAAAAAGG-AAT---TTGAGACCAGACCAAT
sechellia AAACCACATTAACGTTTGCGGTTTACGTTG---------TTTTTCATATCTGCAAAAAGGTACAAGT-------ATAATTTATTTGATTGAAAAAGG-AAT---TTGAGACCAGACCAAT
yakuba AGACCATATCGACGTATAAAGTTAACGTTTAGGCAGAAATTTTTTA-----GCA-AAAGGTATAAGT-------CTTATTTATTTTATAGAAAAAAA-------TAGACACCAGAAGAAT
erecta AGACC-------------ATGTAAACGTTTA----------------------------------------------ATTTATTTTATAGAAAAAAAGGAT---TAGACACCAGACAAAT
ananassae GAGTCACACTAATAGTTTTTATTAAAATTAGTCCGGGTATAGCCCATAGATCCACAAA--------------------------------------------------------------
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis GAACCGAATCGA-------------------------------------------------------------------------------AAAACG-AAT---TCGAAATTCGGAAAGG
virilis TTACTGGGCCAGTTTTTTTTATTTTTTTTTTCGTAAAA--------------------GAGTCAAGTGAGGTTAGTGAACTATTTGA----AAACTG-AATGACTAGCGATTGGCTCGAT
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBRRRRRRRRBBBBBBBBBBBBBBBBRRRRRRRRMMMMMMMMBBBBBRRRRRRRRRRRRRRRRBBBBBBBBBBMMMMMMMMBRRRRRRRRBBBBBMMMMMMMMBBBBBRRRRRRRR
melanogaster CTTTAAC-----AGAAACAAAAAGGCGTGGATATTGTTATATGTACAAAAACAACCATGGCATA------TACGTATGTATTGTATATCCTAATTCGGCCTTCC-TCTTATTTAATCACT
simulans CTTAAAC-----AGAAACAAGAAAGCGTGGATATTGTTATATGTACAAATACAACCATGGCACA------TACATA-----TGTATATCCTAATCCAGCCTTCC-TCTTATTTAAGCAAT
sechellia CTTAAAC-----AGAAACAAGAAAGCGTGGATATTGTTATATGTACAAATACAACCATGGCACA------TACATA-----TGTATATCCTAATCCAGCCTTCC-CCTTATTTAAGCAAT
yakuba ATTTGAC-----AAGGACAAGTAGGCGTGG--------ATAT----AAGTTCAACCGAGAT-----------TATA-----CATATATCCCAATTCCACCTTTTCTCTTATTTAAGCAAT
erecta GTTAGAC-----AGGGACAACTAGGCGTGGATATTATTATAT----AAGTACAACCATGACATA------TATGTA-----CATATACCCTAATCCAACTTTTT----------------
ananassae ------------------------------------------------------------------------------------------------------------------------
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis ACTTCACATTTAAGGAATGAAAGTAGATAATTGTTTTTAAAAGTATAAACTTAGCCTTACCAGACGTATCCACTTA-----CATATGTACAAGCATACATATTT-ACATACTAGTATACT
virilis ATATAGA-----GGGAAT---------TGTATGTTTGTGTGTGTGTGCGCACAGCTGT------------------------------------------------------TAACAAAT
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary MMMMMMMMBRRRRRRRRRRRRRRRRBBBBBMMMMMMMMBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMMMMMMMMMMMM
melanogaster TGCA-----ATAATTTTCAACTATACAGATCAGCAATCAAAGTTC---TTGATCCAATCGCTATAGTAACCA----GATGCGCAAGCTGATA---ATTTATTGAAAACTTTTTTCTTAGG
simulans TGCA-----ATAATTTTCATCATTGCAGATCAGCAATCAAAGTTC---TTGATCCAATCACTATGGTAACCA----GATGCGCAAGCTGCTA---ATTTATTTAAAACATTTTTCTTAGG
sechellia TGCA-----ATAATTTTCATCATTGCAGGTCAGCAATCAAAGTTC---TTGATCCAATCACTATGGTAACCA----GATGCGCAAGCTGCTA---ATTTATTCAAAACATTTTTCTTAGG
yakuba TGTA-----AAATTATACTCATTACCGGCAGGGCAATCCAAGTTC---TTGATTCTATCATTATGATTACCA----GATGCGCAAGCTGCTA---ATTCATTCAAATTATATTTCTTTGG
erecta -----------------------------------ATCCAAGTTC---TTGA--CTATCATTATGATTACCA----GATACGAAAGCTGCTT---ATTCATGCAAA-CATTTTTCTTAG-
ananassae ------------------------------------------------------------------------------------------------------------------------
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis AGTACACTCGACTCATTCTCTTTGTCGGGAGAGAGAAAAAAACCT---TCCAGCAAGCTCTTATACT-------------CGCAGTCAGTTA---AGTTATTGAAAGATTTTTTGTTAGT
virilis TATG-----TTTAGTGTCGCTTCATCTGATTGGCATTTAAAATTCAATTTAGAATCTCCTTTAGAGTTACAAGTATGATTATTAAACAATAATATATTGTTTAAAAAAGTTTTTCTGAAA
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary MMBBBRRRRRRRRMMMMMMMMMMMMMMMMBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBMMMMMMMMRRRRRR
melanogaster ATTCTTCCAT------ATTAAGCATTTCCC---TTGCTGTGACCTCGATTCAAAA---GAAAGCACTGATTTAATGCAGGTAATCGTCA---AAAAAATAATGTTTGATATTTTTTTGAT
simulans AGTCTTCCAC------ATTAACCCTTACCC---TTGCTGAGACTCGGATTCAAAA----AAAGCATTGGTTTAATACATGTAGTCGTC-----------ATTGTTTGATATTTTTCGGAT
sechellia AGTCTTCCAC------ATTAACCCTTACCC---TTGCTGAGACCCGGATTCAAAA----AAAGCATTGGTTTAATACATGTAGTCGTC-----------ATTGTTTGATATTTTTCGCAT
yakuba CATCTTCTACATA--TATTAACCCTTACCC---TTGCTGTGACCCCGATTTAAAA----AAAGCCCTGTGTTAATGGATGTTATCGTCCT--AAAAATTG----TTGAGATTTTTCAGAT
erecta -----------------------------------ACTGTGACCCCGA----------------------TTGATCCATGTTCTCGTCAT--AAAAAATATTATTTGATATTTTTCAGAT
ananassae ------------------------------------------------------------------------------------------------------------------------
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis TTTTTT-----------------------------------------------------------------------------------TCGAAAAGGTATTCTGCGATATTTTCAATCC
virilis AATGTT-----TAATTATAAAACGTTATTTATGTTATTTTAACAAATATTTATAACATTTAAATATTCTCTATATATAAATA--------------TTAAATGTTCAATATTCTCTTGTC
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary RRMMMMMMMMBBBBRRRRRRRRMMMMMMMMBBBBBBBBBBBBBBBBBRRRRRRRRBBBRRRRRRRRBBMMMMMMMMBBBBBBBBBBBRRRRRRRRBBBMMMMMMMMBMMMMMMMMBBBBB
melanogaster CGCGTGCCATGGGTAACTCAAT--------AAAA-----TGTTTGTGATTTAT-------AT----------ATGTAAACATCAAGTATATAG----------------AAAACTGAGGT
simulans CGCGTGACATCGGTAACTGAAT--------AAAT-----TGTTCGTGATTTAT-------AT----------ATGTAAACATAAAATATATAG----------------AAAACTGAGGT
sechellia CGCGTGACATCGGTAACTGAAT--------AAAT-----TGTTCGTGATTTAT-------AT----------ATGTAAACATAAAATATATAG----------------AAAACTGAGGT
yakuba CGT-TACCGAGGGTAACGACATTATAACGACAAAATATGTGTTCTTTATATAC-------AT----------ATGTAAACATAAAATATCTAAGAAACACTTCAACGGCAAAACTGAGTT
erecta CGT-------GTGTAACGACAT--------AAAAGTATATATTTGTTTTAAAC-------AT-----AAGTAAGGTAAACATAAAATATCTCAGAAACACTTTAACGGCAGAGCTGAGTT
ananassae ------------------------------------------------------------------------------------------------------------------------
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis TTTTAGCCAGATGCCAGACAATCTTGTG--CAGA-----CTTCTGCCAAATCTCCGACTAAT----------CTGCGATTATTAGGTCCTTGA----------------ACGAACGGGTA
virilis CAAATTTTTTAATTCATTCGTTTATT----CAAT-----T-TACGTAATTAAATTG----ATTCCCCTATTGATTTATCTACTAACTATATTT----------------TCAAATTAGGT
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CGGGTATACTTTTTGAGTTCGTTCGAAAGGGGTTTTCCATTGCACTCAATAT-TATATTCAAATAGATCTTA-------------GACGTTCCATAAC-AGCTTAAGG-TGCGCGGATTA
simulans CGAGTATTCTTTTTGAGTTCGTTCGAAAGGGG-----------------------TATTTAAATAGATCTCA-------------GTCGTTCCATGAC-AGCTTAAGGTTGCGCGGATTA
sechellia CGAGTATACTTTTTGAGTTCGTTCGAAAGGGG-----------------------TATTTAAATAGATCTCA-------------GTCGTTCCATAAC-AGCTTAAGGTTGCGCGGATTA
yakuba TGAG--TACTTCCTGAGTTCGTTCAAAAGGGGTTTTCCATCGCATTCTGTAT-TATATTTAAATAGATCTAA-------------GCCGTTCCATGGC-AGCTTAAGGTTGCGTGGATTA
erecta CAAGTATACTTCTTAAGCTCGTTCGAAAGGGGTTTTCCATCGCATTCAATAT-TATATTTAAATAAATCTAA-------------GCCGTTCCATAGC-AGCTTAAGGTTGCGTGGATTA
ananassae ---------------------TCCGAAAGGGGTTTCCCATCCCATTAAAAAG-TAGATTTAAACAG--TTAC-------------GCATTTCCA---------------TCCTTGGCTTA
pseudoobscura ---------------------------AAGGAGTTTCCATCACATTAAAAATGGGGATTTGAGTAATTTTAAATTCAAACAATA-AATGATTAGTGGCTAGTCGAGGATTGCGCAGTTTA
persimilis TGGCTAAACCC----AATCCCTTCAA---GGAGTTTCCATCACATTAAAAATGGGGATTTGAGTAATTTTAAATTCAAACAATATAATGATTAGTGGCTAGTCGAGGATTGCGCAGTTTA
virilis CAGAGTTACTTTTTAAATCAG---------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GGACTGACG---ATTACCGACTGGGTAAAGACAAG-------ACAGAATT-------CAATCCT-------------------------------GTTCTTGATACTTTGTCAA------
simulans GGACCAACG---ATTACCGACTGGATAAAGACAAGTTCGAGAACAGAATT-------CAATCCT-------------------------------GTTCTCGATACTTTGTGAA------
sechellia GAACCAAAG---ATTACCGACTGGATAAAGACAAGTTCGAGCACAGAATT-------CAATCCT-------------------------------GTTCTCGATACTTTGTGAA------
yakuba GGACAAACG---ATTATCGACTGGTTAAAGACAA--ACGGGAACAAAATT-------CAATCCT-------------------------------GTTCTTGATACTTTGTCAA------
erecta GGACTGACG---ATTACCGACTGGTTAAAGACAAGTACGTGAACAAAATT-------CAATCCT-------------------------------GTTCTCGATACTTTGTCAA------
ananassae GGAAAAGCG---ATTATCGCGCGGCTAATGATGAGTCCGCGGGAAAGCTTCTGGTCGCAGCTCTAAGCGGAAGGATTACGGAAGAGATCGCGTGGGTGCTGTGGAATTTCTCAA------
pseudoobscura CATCCGCGGCTTATTACGGTGTGGCCAAAG---AGTGCAGGGA-AGGATT-------GAGTCCA-------------------------------AGTCTGGACTGTAAGTATT------
persimilis CATCCGCGGCTTATTACGGTGTGGCCAAAG---AGTGCAGGGA-AGGATT-------CAGTCCA-------------------------------AGTCTGGACTGTAAGTATT------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ---------------------------------------------------------------T-------------------------------ATTGTCGGCACATTATCAGCTCATC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster --TGGATTTAT-ACTAAAT----C--------------ATAGGCTCATAA----TAC----------CTTCTTACGTTT-----------------------------TGC
simulans --TGGATTTAT-ACTAAAT----C--------------AGAGGTTCATAG----TAC----------CTTCTTATGTTT-----------------------------TGC
sechellia --TGGATTTAT-ACTAAAT----C--------------AGAGGTTCATAA----TAC----------CTTCTTATGTTT-----------------------------TGC
yakuba --CGGATTAAA-TTTAAAT----C--------------AGAGGCTCATAA----TAC----------CTTATTACGTAC-----------------------------TGC
erecta --CGGATTAAT-ATTAAAT----C--------------AGAGGCTCTTTA----TAC----------GTTTTTACGTAC-----------------------------TTC
ananassae --AGGCTTACG-GTTAAATGCAAC--------------AGAATCGCCTAA----TGCACTTTAAGTACCTTTCATCTCT-----------------------------ATT
pseudoobscura --AGGATTAGCAACCAAAT----CGCATGATTAAGAATGGAAGCTCACAGCGGTTCC----------ATTCTGAAGTATTCAAGAAACACACAAGATCAAGAGTGCGATGG
persimilis --GGGATTAGCAACCAAAT----CGCATGATTAAGAATGGAAGCTCACAGCGGTTCC----------ATTCTGAAGTATTCAAGAAACACACAAGATCAAGAGTGCGATGG
virilis ---------------------------------------------------------------------------------------------------------------
mojavensis ---------------------------------------------------------------------------------------------------------------
grimshawi GCTCGATTGAC-TATAAAT----C--------------AAAAAATCAAAA----ATC----------CCCTTCTCAGCT-----------------------------CGT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
hb