melanogaster ATG---GGGTTTC------TGAAATAGGTTT----GCCAAACAAATTTTAAGTA----TAAATGTATA-----CATATG--TCAA---CTAATAAAT-TTAGCAAATAAAAT---GTACC
simulans NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
sechellia ATGT--GGATTTC------TAAAATAGA-TT----GCCAAACAAATTGTAAGTA----TATATTTATACATATCATATG--TCAA---CTAATAAAT-TTAGCAAATAAAAC---GTACC
yakuba AA----GGGGTTT------CAAAATAGA-TT----TAAAAGAAAATTATGAGCA----CATGTGCA----------------CAA---CTAATAAGG-TTCGCATGTAAAAC---TCACC
erecta AG----TGCTTTC------CAAAATAGA-TT----GCCAAACAAAT------------------------------------CAA---CTAATAACT-TT--------------------
ananassae --------TTTTT------TTACAAATT-TT----ATCATAAAACTTTTATGTATTTTTAAGTGTTGGCCTATT--------TTA---GGAATGATT-TT-----------------ACT
pseudoobscura ------------------------------------------------------------------------------------------------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------GAAATTT--GGTGAAAATTATT-TT----GACAGAAATCTTTATAGAA--------TGTTTAAGAAATATTTTATTCAA---ATATAAAAATTTCGTAA----------ATAAC
grimshawi ATGCCTGGATTTT--AGATGAAATTGGT-TTCCTAGCCAGAGCACTTCTTTGAG-ACACCATTGTTTGCCGGACAGCTGACCGGATGGGTATGGAGG-ATCGTGAAGTTATCGGCATAGT
Summary BMMMMMMMMMMMMMMMMMMBBBBBRRRRRRRRRRRRRRRRRRRRRRRRRRRMMMMMMMMMRRRRRRRRRMMMMMMMMMMMMMMMMMMRRRRRRRRRMMMMMMMMMRRRRRRRRRRRRRRR
melanogaster TGCAAGTAT--------------------CTATAAATTTATTGGACCAATTTTGTGTAAAAAACTGAACTG------------------GCAC------------TCTTC----------
simulans NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATT----------
sechellia TGCAA-------------------------TATACATTTATTGGATCAA--TTATGTAAAAAACTGAGCTG------------------GCAC------------TCTTC----------
yakuba TGCTTAGAT--------------------CTATGAATTTA----AAAAA--CTGTTGTAAATCCTGCGTTG------------------GCAC------------TCTTC----------
erecta ----------------------------------AATTTA----AAAAA--CTG--GGCAATCCTGAGTTG------------------GCAG------------TCTTC----------
ananassae ACCAA-------------------------TTTGTGTTTTTTGGCCAAA--ATACTTAAATTAATTAACTG------------------A------------------TT----------
pseudoobscura -----GTATTTAAAGCCGTTTTGATCCTCTTGTATGTTTG-TGGCTTAA--CTTT-------------TTG------------------GCTC------------GCTTC----TGCA--
persimilis -----GTATTTAAAGCCGTTTTGATCCTCTTGTATGTTTG-TGGCTTAA--CTTT-------------TTG------------------GCTC------------GCTTC----TGCA--
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis TGAGA--------------------------------------GATAAA--TTCT-CTAAATTAAAGAGTAT--ATATTAAAATAGCTGCACTG--------------------------
grimshawi TGCGT--------------------------------------GGCAAA--T-----TGAATTTGGCACTGTCGGCACCCAAATAGCAGGCACCATAGGCGCTACTCTTGGTGATGCACA
Summary RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRBBBBBBBBMMMMMMMMMRRRRRRRRRMMMMMMMMMBMMMMMMMMMRRRRRRRRRMMMMMMMMMRRRRRRRRRMMMMMMMMMRRRRRRRRR
melanogaster --------------CCAAGAATG--GGACTTCGAGGACTCCT----TGCTGAA----TCACTTACTCAACCC-ATTCCAACTCATCCAAT-CCGCGC--AATCATCATAAATT-TTGGCC
simulans --------------GTAAAAAAG--GGGCTTCCAAGAGGATGAGATCGGTGGA----TCATT---TCTAACC-ACCC--ACTCATC--AT-CGGC-----ATCATCATAA----TTAGTC
sechellia --------------CAAAGAATG--GGACTTCGAGGACTCCG----TGCTGAA----TCACTTACTCAACCC-ATCCCAACTCATCCAAT-CCGCGC--AATCATCATAAATT-TTGGTC
yakuba --------------CCAAAAATG--CGTCTGCGAGGACTCCG----CGCTGAA----TCACTTACTCAACCC-ATC----------CCGT-TCGCGC--AATCATCATAAATG-TTGGTC
erecta --------------CCAAGAATG--GCTCCTCGAGGATTTCG----GGCTGAA----TCACTTACTCAACCC-GTCG------ATTCCGT-CCGCGC--AATCATCATAAATTCTCGGTC
ananassae --------------TAAACAAT------TTGTGAGGC---------TCATGGA----TGACAGA---GACCC-CTTC---------TAATGCCTCAC--AATCATCATAAATTGTTGCCA
pseudoobscura --------AGATCGCAAAGAATG--GGAACTGGAAAATGCTT----TGTTCGG----TCTCTCACCCTCCCCGATCC-------------------------------------------
persimilis --------AGATCGCAAAGAATG--GGAACTGGAAAATGCTT----TGTTCGG----TCTCTCACCCTCCCCGATCC-------------------------------------------
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi CCAGCTTGAGATTGTAATCGATGCTCATCTTCGAGATCTCCC----TGGTGAAAGCGTCCTTCATCAGATTC-C---------AACTGCT-CCACACGGAGCCAACGCAGA---------
Summary MMMMMMMMMRRRRRRRRRBMMMMMMMMMBBBBBBMMMMMMMMMBBBBBRRRRRRRRRBBBBBBBBBBBBBBBMMMMMMMMMRRRRRRRRRMMMMMMMMMBBBBBBBMMMMMMMMMBBBBB
melanogaster TTTTTGTTGTAATTGTTTTATGGCAGAAATTACTCAATCATCA-AGCATAATTCCCT----CGTTTTCGCCGTTTTATTGCCAATTTTTGCAC--TGCCT-TTGCCTTT-----TTCCCG
simulans TTTGTGTAATGGTTAT---------GAGAATAATC-ATCATCA-AGCATAAT--CCT----CG--TTCGCCGTTT--ATGCCA--TTTTGCAC--TGCCT-TG--CCTC-----TTCCCG
sechellia TTTTTGTTGTAATTGTTTTATGGCAGAAATTACTCAATCATCA-AGCATAATTCCCT----CGTTTTCGCCGTTTTATTGCCAATTTTTGCAC--TGCCT-TTGCCTTT-----TTCCCG
yakuba TTTTTGCTGTAATTGTTTTATGGCAGAAATTACTCAATCATCA-AGCATAATTCCCT----CGTTTTCGCCGTTTTATTGCCAATTTTTGCAC--CGCCT--CGCCTTT-----TTCCCG
erecta TTTTTGCTGTAATTGTTTTATGGCAGAAATTACTCAATCATCA-AGCATAATTCCCT----CGTTTTCGCCGTTTTATTGCCAATTTTTGCAC--TGCCTCCCGCCTTTGCCACTCCCGG
ananassae TTTTTGGCGTAATCGTTTTATTACACAAATTACTCAATCATCA-ATCATAATTCCGTTTGCCGTTTTC-CGTTTTTATTGCCAATTTTTGCAC--TGCCT-CTGCCTCT-----TT--GG
pseudoobscura -----------ATTATTTTATGGCGGAT--------ATCATGGCAGTACAATTTGCT----CGGCATTTTTATGGCATGGCCAATTTTTGCACAGTGTCT-AGGCCTTT-----CCTTTG
persimilis -----------ATTATTTTATGGCGGAT--------ATCATGGCAGTACAATTTGCT----CGGCATTTTTATGGCATGGCCAATTTTTGCACAGTGTCT-AGGCCTTT-----CCTTTG
virilis ------------------------------------------------------------------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBBB
melanogaster CCCT--------------TTCCTCAGCGTTTTGCGAATCTTTGCCG--------GCATTTCTATTGCGCGGACAA------------------------TCCGG-----CCAGTGTGT--
simulans CC----------------TCCCTCAGCG-TTTGCGAATC-TCGCCG--------GCA-TTCTA-TGCGC-GACAA------------------------TCCGG------CAGTGTG---
sechellia CCCT--------------TCCCTCAGCGTTTTGCGAATCTTCGCCG--------GCATTTCTATTGCGCGGACAA------------------------TTCGG-----CCAGTGTGT--
yakuba CCCT--------------TCCCTCATCGTTTTGCGAATCTCCGCCATTTCCCCGGCATTTCTACTGCGCGGACAA------------------------TCCGG-----CCAGTGTGT--
erecta CCCT--------------TCCCTCATCGTTTTGCGAATCTCCGACGGATTC---GCATTTCTATTGCGCGGACAA------------------------TCCGG-----CCAGTGTGT--
ananassae CCCTTTTTGGCAAGCAAGTCCTTCGGAA------GGACCTATGCTTCGTTTG--GCACTTCTATTGCGCGGACAA------------------------TTCCATTCCATTAGTGTGCGA
pseudoobscura CCAATTCTG---------TTACCCGTCTTGTCTCGTCTC---------------CCACTTTC--TGCAAGGGAAGGGAATAAAGATAGAGGCCCAGCCCTCCGT-----CCAGTAT----
persimilis CCAATTCTG---------TTACCCGTCTTGTCTCGTCTC---------------CCACTTTC--TGTAAGGGAAGGGAATAAAGATAGAGGCCCAGCCCTCCGT-----CCAGTAT----
virilis ----------------------------------------------------------------------------------------------------------------GTGTGTG-
mojavensis ----------------------------------------------------------------------------------------------------------------GTGTGTG-
grimshawi ----------------------------------------------------------------------------------------------------------------GTGTGTG-
Summary BMMMMMMMMMRRRRRRRRRBBBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBBBBMMMMMMMMMMMMMMMMMMRRRRRRRRRRRRRRRRRRBBBBBBBBBBBB
melanogaster TGGCCATTTACTTGCCATGATGACGGG-------CATAATCAGCGA-----GATCGGCGCTTTG--TGAGTGCA-GAATGTGCAATAAAGCGGCAACA--------ATCGGCAGGG-ATT
simulans TGGCCA-TTACTTGCCATGATGACGGG-------CATAATCAGCGA-----GATCGGCGCTTTG--TGAGTGCA-GAATGTGCAATAAAGCGGCAACA--------ATCGGCAGGG-ATT
sechellia TGGCCATTTACTTGCCATGATGACGAG-------CATAATCAGCGA-----GATCGGCGCTTTG--TGAGTGCA-GAATGTGCAATAAAGCGGCAACA--------ATCGGCAGGG-ATT
yakuba TGGCCATTTACTTGCCATGATGACGGG-------CATAATCAGCGA-----GATCGGCGCTTTG--TGAGTGCA-GAATGTGCAATAAAGCGGCAACA-------------------ATT
erecta TTGCCATTTACTTGCCATGATGACGGG-------CATAATCAGCGA-----GATCGGCGCTTTG--TGAGTGCA-GAATGTGCAATAAAGCGGCAACA--------ATCGGCTTGGGATT
ananassae TCGCCATTTACTTCCCATGATGACGATGACGGACGATAATCAGCGA-----GATCGGCGCTTTG--TAAAGGCA-GTATGTGCAATAAACCG-------------------------A--
pseudoobscura TCGCCATTTACTTCCCATGATGACGGA-------CATAATCAGCGAGATCGGATCGGCGCTTTG--TGCGTGCA-AAATGTGCAATAAAGCAGCAACAACGGGAGGATCGCTAGAGGCTT
persimilis TCGCCATTTACTTCCCATGATGACGGA-------CATAATCAGCGAGATCGGATCGGCGCTTTG--TGCGTGCA-AAATGTGCAATAAAGCAGCAACAACGGGAGGATCGCTAGAGGCTT
virilis TGTGTGTGTACTTCCCATAATCA---G-------CATAATCAGCGA-----GATCGGCGCTTTGTTTGCCAGCACAAATGC-CAATAAAATGGCAAAA-------GAGCAACAA---CAA
mojavensis TGTGTGTGTACTTCCCATAATCA---G-------CATAATCAGCGA-----GATCGGCGCTTTG--TGCTAGCA-AAATGC-CAATAAAATGCCAAAA-------GAGCAACA-------
grimshawi TGTGTGTGTACTTCCCATAATCA---G-------CATAATCAGCGA-----GATCGGCGCTTTG--TGCGCGCA-AAATGC-CAATAAAAGAGCAAAA-------GAGCAACAA---CAA
Summary BBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBB
melanogaster CGCCTTC----------CCATATTCCGGGTATT--GCCG----GCCCGG-------------------------------------GAAAATGC--GAAAGTGTTT---GCG-------G
simulans CGCCTTC----------CCGTATTCCGGGTATT--GCCG----GCCCGG-------------------------------------GAAAATGC--GAAAGTGTTT---GCG-------G
sechellia CGCCTTC----------CCGTATTCCGGGTATT--GCCG----GCCCGG-------------------------------------GAAAATGC--GAAAGTGTTT---GCG-------G
yakuba CGCCTTC----------CCCTATTCCGAGTATT--GCCA----ACCCGG-------------------------------------GCAACTGC--GAAAGTGTTT---TCG-------C
erecta CGCCTTC----------CCCTATTCCCAGTATT--GCCCGAGTGCCCGG-------------------------------------ACGACTGC--GAAAGTGTTT---GCG-------G
ananassae -------------------GTATTCCGGGTATTCGGCCAAGACGAAGGG-------------------------------------AAAAATGC--GAAAGTGTTC---GCG-------G
pseudoobscura CGTCTTCGTCTTCGGCTTCGGCTTCCCGGTATT--TATT----TCGCAG-------------------------------------CGAAAGGCCAGAAAGTGTTC---TTG-------G
persimilis CGTCTTCGTCTTCGGCTTCGGCTTCCCGGTATT--GATT----CCGCAG-------------------------------------CGAAAGGCCAGAAAGTGTTC---TTG-------G
virilis CAACGACAACAACAAAAGCGACTTCCACGTAGT--TAGG----TTTCAGGC------------------------------------------C--GAAAGTGTTCAACTTG-------G
mojavensis -------------AAAGGCAACTTCCATGAACT--GAGG----TTTTGGGCCAAGCCAAGCCAAGCCAAGCCAAGCCGAAGCCGAAGCCGCTTC--GAAAGTGTTC-------------G
grimshawi CCAATAC------AAAGGGGGCTTCCAAGTATT--GAGG----TTTGGGCC---------------------------AAGCCGATGATGC--C--GAAAGTGTTCAAATCGCGACAATG
Summary BBBBBMMMMMMMMMBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBRRRRRRRRRMMMMMMMMMMMMMMMMMMRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRR
melanogaster -------------ATCGAGATGGAA-----GAT------------AGAGGATTGAGTATT---GAAACGA------GGAAGGTAC-------------TTCCGCCGG-CG---GACACTT
simulans ATCGCAAACG-GTATCGAGATGGTA-----GAT------------AGAGGA-TGAGTATT---CAACAGA------GGCAGGTAC-------------TTCCGCGGC-CG---GACACTT
sechellia ATCGCAAACG-GTATCGAGATGGTA-----GAT------------AGAGGATTGAGTATT---CAACAGA------GGCAGGTAC-------------TTCCGCGGC-CG---GACACTT
yakuba ATCGGGATCG-GGATCGGCATCGGCATCGGAATCAGAATCGGGAAAGGAGATTGAGC-TA---TGACAGAGGTACCGGCAGGTAC-------------TCCCGCTGA-CG---GACACTT
erecta ATCGGGATCG-GAATCGGAATAGGAATAGGAAT------------ACGAGACTGAG----------CAGA------GGCAGGTACT------------TCCCGCCGGCCG---GACACTT
ananassae ATCGC-ATCG-GTCCAGAGACA--------CCT------------AGGGTG-------------------------GTCAGGTAC---------------CCGTACC-CG---TAC----
pseudoobscura ATGGA------GTGTTGAGGCCG-------GAC------------AATGGC---------------CAGG------GGCAGGTACTGATCCTCGACAGTGCAACAGC-TC---GACACTT
persimilis ATGGA------GTGTTGAGGCCG-------GAC------------AATGGC---------------CAGG------GGCAGGTACTGATCCTCGACAGTGCAACAGC-TC---GACACTT
virilis CTTGGACTATGG----TTGATCG-------GTT------------GAGGGT--------------GAGGG------GTCAGGT-------------------AATGC-TG---TTCACTT
mojavensis CT---------G----GTGATCG-------GTT------------AGGGGTCAGAG-------GGTAGGG------GTCAGGTAC--------ACTCATCTCAACTC-AG---CTCACTT
grimshawi CTCGC------G----GTGATCG-------GGT-------------AGGGTCAGGGCTGGGCAGGACAGG------ATCAGGT-------------------TACCC-AGGAACTCAGTT
Summary RRRRRRRRRRRRRBBBBBMMMMMMMMMRRRRRRRRRMMMMMMMMMBBBBBMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBB
melanogaster TCGCCTA-AC--CAAGCCAATCCAACCCATCCCAA----------TCCAA---TCCAACCCACCCGATCGCCATAAAGGGTATTTACTGTCGCTGCCGCAGAGCC---------------
simulans TCGCCTA-AC--CAAGCCAGTCCAACCCATCCCAA----------TCCAA---TCCAACCCACCCGATCGCCATAAAGGGTATTTACTGTCGCTGCCGCAGAGCC---------------
sechellia TCGCCTA-AC--CAAGCCAGTCCAACCCATCCCAA----------TCCAA---TCCAACCCACCCGATCGCCATAAAGGGTATTTACTGTCGCTGCCGCAGAGCC---------------
yakuba TCGCCTA-AC--CAAGCGAGCCCAACCCAAT--------------CCCAA---T----CCCACCCGATCGCCATAAAGGGTATTTACTGTCGCTGCCGCAGAGCC---------------
erecta TCGCCTA-AC--CAAGCGGACTCAACCCAACCCAACCCAACACAACCCAA---TCCAACCCACCCGATCGCCATAAAGGGTATTTACTGTCGCTGCCGCAGAGCC---------------
ananassae ---------------------------------------------CCATA---CCCGTCACTTTCGC---CCATAAAGGGTATTTACTGTCG----------------------------
pseudoobscura TCGCCTG-GT--GAAAGG---------------------------TC---------------------TGCCATAAAGGGTATTTACTGTCGCTGCCGCAGTGTCGCCCTGAAGCCATGG
persimilis TCGCCTG-GT--GAAAGG---------------------------TC---------------------TGCCATAAAGGGTATTTACTGTCGCTGCCGCACTGTCGCCCTGAAGCCATGG
virilis TCGCCTG-GCGCGAAGTGAA----------------------AGGTTAGAGAGTTGGCTTGGCCCGACCACCATAAAGGGTATTTACTGTCGATGCCGCAGTGTC---------------
mojavensis TCGCCTG-GC---------------------------------------------------------CCGTCATAAAGGGTATTTACTGTCGCTGCCGCAGTGTC---------------
grimshawi TCGTCAACGC--TAAGTGAA----------------------AGGTTAAAGGTGCTGACTGGCCTGACCGCCATAAAGGGTATTTACTGTCGCTGCCGCAGTGTC---------------
Summary BBBBBBMMMMMMMMMBBBRRRRRRRRRRRRRRRRRRRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMRRRRRR
melanogaster -----TCGCTTGA----------CGACTTAACCCAAGCGGTCGTTTCGCGTC---------CATTCTC--------CGG--------------------------ACGG-AGTCAAA--G
simulans -----TCGCTTGA----------CGACTTAACCCAAGCGGTCGTTTCGCGTC---------CATTCTC--------CGG--------------------------ACGG-AGTCAAA--G
sechellia -----TCGCTTGA----------TGACTTAACCCAAGAGGTCGTTTCGCGTC---------CATTCTC--------CGG--------------------------ACGG-AGTCAAA--G
yakuba -----TCGCTTGA----------CGACTTAACCCAAGCGGTCGTTCCGCGTC---------CATTCTC--------CGG--------------------------ACGG-AGTCAAA--G
erecta -----TCGCTTGA----------CGACTTAACCCAAGCGGTCGTTCCACGTC---------CATTCTC--------CGG--------------------------ACGG-AGTCAAA--G
ananassae --------------------------CTTAACCCAGCAGCCCATCG------------------------------CGG--------------------------AGAG-AGTCAAA--G
pseudoobscura CTGGGCCGGTTGAAGCTGCAACTCAACTCAACTCAA---CTCAACCCAATCCAAAAAGGGACACTCTCGCGGA---CAC--------------------------ACAG-AGTCAAA--G
persimilis CTGGGCCGGTTGAAGTTG-----CAACTCAACTCAA---CTCAACCCAATCCAAAAAGGGACACTCTCGCGGA---CAC--------------------------ACAG-AGTCAAA--G
virilis -----GCGTTTAT--TTGCACTTGGGCCCA-GGCAAAAGGTTGCT----------------CATTCTG--------CATGGACAACGGACAGAGGACAGAGGATCGCGG-CGGGTGA--A
mojavensis -----GCGTTGAT--TTGCTCGTTG------AAAAAAGGTTTGCT----------------CATTCTGCCGTAGAACAAAACCACCGGACAGCGGACACCGGACCGCGGACGGACGATGA
grimshawi -----GCGTTTAT--TTGCTTTTGGGCCCAGAAAGAAAGGTTGCT----------------CATTCTG--------CGA--------------------------GCGG-CG--TGA--A
Summary RRRBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBRRRRRRRRRBBRRRRRRRRRRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBB
melanogaster ACAAAGG--CCGGCGGAGGTGGACAATAGGCAAGGTTGTTGCTTGTGGGTAGGGTTTGAGCT--A--TGAGCTATGAGCTGTGAG--CTGTTAGCCCTGAACCCCGAACCTCGAGA----
simulans ACAAAGG--CCGGCGGAGGTGGACAATAGGCAAGGTTGTTGCTTGTGGGTAGGGTT-----------TGAGCTATGAGCTGTGAG--CTGTTAGCCCTGAACCCCGAACCTCGAGA----
sechellia ACAAAGG--CCGGCGGAGGTGGACAATAGGCAAGGTTGTTGCTTGTGGGTAGGGTT-----------TGAGCTATGAGCTGTGAG--CTGTTAGCCCTGAACCCCGAACCTCGAGA----
yakuba ACAAAGG--CCGGCGGAGGTGGACAATAGGCAAGGTTGTTGCTTGTGGGTAGGGTT-----------CGAGCTCTGAGCCTCGAATCTCGCGAACCTCGAACTTCGAATATTGTAAATTC
erecta ACAAAGG--CCGGCGGAGCTGGACAATAGGCAAGGTTGTTGCTTGTGGGTAGAG----------------GGTTTCAATCCCGAA-----------------------------------
ananassae ACAATGGCTCCGGAGGTGCTGCACAATAGGCAAGGTTGTTGGTTGCGGCCAGGGT------------AGGGTTCAGGGTTCTGGG-----------------------------------
pseudoobscura ACAATGG---TGGC--------ACAATAGGCAAGGTTGT-------GGGTAGGGT------------TCTGTTCT--GTTCTGGA--CGG------------------------------
persimilis ACAATGG---TGGC--------ACAATAGGCAAGGTTGT-------GGGTAGGGT------------TCTGTTCT--GTTCTGGA--CGG------------------------------
virilis ACAAAAG--CGC--CTGAATGCACAATAGGCAAGGTTGT-------GGGTAGGGTTCGACGG-----TGGGCA---AGGCTTGGG-----------------------------------
mojavensis ACAAAAG--CGCAGATGAATGCACAATAGGCAAGGTTGT-------GGCTAGGGTTCGGCAG-----TGGGCA---AGGCTTGGG-----------------------------------
grimshawi ACAAAAG--CGCCTCAACATGCACAATAGGCAAGGTTGT-------GGGTAGGGTTCGTCGGGGCTTTGGGCA---AGGCTTGGA-----------------------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMMMMMMMMMMRRRRRRRRRMMM
melanogaster ---ATTGAACCT-------TTCCCGGGGCAAG-AA-GGCTTGCATGTGGGCCTTTTCCAGGTCG-------------GCCAGTAGGTAGAG-TTGTT-----GC-GATGCGGCTATGCCG
simulans ---ATTGAACCT-------TTCCCGGGGCAGG-AA-GGCTTGCATGCGGGCCTTTTCCAGGTCG-------------GCCAGTAGGTAGAG-TAGAT-----GC-GATGCGGCTATTCCG
sechellia ---ATTGAACCT-------TTCCCGGGGCAAG-AA-GGCTTGCATGTGGGCCTTTTCCAGGTCG-------------GCCAGTAGGTAGAG-TAGAT-----GC-GATGCGGCTATTCCG
yakuba AATATTGAACCT-------TTCCC-GGGCAAG-AA-GGCTTGCATGTGGGCCTTTTCCAGGCCG-------------GGCAGTAGGTAGAT-----------------------------
erecta ---ATTGTACCT-------TTCCC-GGGCGAG-AAGGGCTTGCATGTGGGCCTTTTCCAGGTCG------------CAGATGTAGGTAGATGTAGAT-----GTAGATGCGGATGGGCCG
ananassae ---TTCGGGCCT-------GGCTT-GGTCAAG-AA-GGCTTGTAGCTGGGCCTTTTCCAGGTCACTGTATATGCCCCAGTGGTAGGTAGGT-GAGGTAGTGAGT-GGCAGGACTCTGCCT
pseudoobscura ---GTCGTGTCG-------------GGTCGGG-AA-GGCTTGCAC-TGGGCCTTTTCCAGTGCG-------------GCCAAGAGAGGAGA-TCGCT-----CCAGGTAGAGCC---TCT
persimilis ---GTCGGGTCG-------------GGTCGGG-AA-GGCTTGCAC-TGGGCCTTTTCCAGTGCG-------------GCCAAGAGAGGAGA-TCGCT-----CCAGGTAGAGCC---TCT
virilis ---CTTGGACAA-------CGAC---AGCAG--CA-GAGACTCTGG----------CCAGGTCG--------------CCGGGCGTTCAGG-TAGAG------C-------GGCATTC--
mojavensis ---CTTACACGG-------CGACTCGATCAGGTCA-AACACACAGG----------ACGCGATG---------------CAGGAGCTTAGG-TAGAG-----CC-------GATGTTC--
grimshawi ---CTTGGGCTGGGCAGATCGACTTGGCCAGGTCA-G-------------------------CG---------------TAGTTGGTCAGG-TAGTC-----GA-------GGCACTCGA
Summary MMMMMMBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMMMMMMMMBBBBBBBBBBRRRRRRRRRMMMMMMMMMBBBBBBBBBBBB
melanogaster -GGCGAGTTAATGCCAATGCAAATTGCGGGCGCAATATAACCCAATAATTTGAAGT-----AACTGG------------------------------------C--AGGA----GCGAG-
simulans -GGCGAGTTTATGCCAATGCAAATTGC-GGCGCAATATAACCCAATAATTTGAAGT-----AACTCG------------------------------------C--AGGA----GCGAG-
sechellia -GGCGAGTTAATGCCAATGCAAATTGC-GGCGCAATATAACCCAATAATTTGAAGT-----AACTCG------------------------------------C--AGGA----GCGAG-
yakuba -GGCGAGTTAATGCCAATGCAAATTGC-GGCGCAATATAACCCAATAATTTTAACT-----AGCTCG------------------------------------C--AGGA----GCGAGG
erecta -GTCGAGTTAATGCCAATGCAAATTGC-GGCGCAATATAACCCAATAATTTGAACC-----AACTCG------------------------------------CGGAGCA----GCGAGG
ananassae CAGCGAGTTAATGCCAATGCAAATTGC-GGCGCAATATAACCCAATAATTTTAACTATGTCAACTCG------------------------------------C--AAGGATATGCAAG-
pseudoobscura -GGCGAGTTAATGCTAATGCAAATTGC-GGCGCAATATAACCCAATAATTTTAACT-----AACTCG------------------------------------C--AATG----GACAG-
persimilis -GGCGAGTTAATGCTAATGCAAATTGC-GGCGCAATATAACCCAATAATTTTAACT-----AACTCG------------------------------------C--AATG----GACAG-
virilis -GGCGAGTT------AATGCAAATTGC-CGCGCAATATAACCCAATAATTTGAACT-----AACT--------------------------------------C--AACG----ACTGG-
mojavensis -GGCGAGTT------AATGCAAATTGC-CGCGCAATATAACCCAATAATTTTAACT-----AACTCACAACGACAACAACAACAGCAACAACAACAACAACAAC--AACA----ACTGG-
grimshawi -GGCGAGTT------AATGCAAATTGC-CGCGCAATATAACCCAATAATTTGAACT-----AACTCACAGCAA------------------------------C--AACA----ACTGG-
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRBBBBBMMMMMMMMMBBRRRR
melanogaster ---------------G----------------------TATCCTTCCTG------G---------TTACCCG-----GTACTGCATAACAATGGA----------ACCCGAACCGTAACT
simulans ---------------G----------------------TATCTTTCCTG------G---------TTACCCG-----GTACTGCATAACAATGGA----------ACCCGAACCGTAACT
sechellia ---------------G----------------------TATCCTTCTTG------G---------TTACCCG-----GTACTGCATAACAATGGA----------ACCCGAACCGTAACT
yakuba CATCCTTGCATCCTTG----------------------CATCCTTCCCGGTTACAG---------TTACCCG-----GTACTGCATAACAATGAA----------------CCCGAAACT
erecta ---------------G----------------------CATCCTACCCG------G---------TTACCCG-----GTACTGCATAACAATGAA-----------------ACGAAACT
ananassae ---------------G----------------------A-----TGCAA------G---------TTAGCCG-----TAACCGGACAATGGTGAA-------------------------
pseudoobscura ---------------GGCAGTAGAGCAGTAGAGCAGTAGAGCATTGCAG------GAAGGATGCAATACTCGGGAATGGAATGCATAACAATGGG-----------------CAAGGACC
persimilis ---------------G--------GCAGTAGAGCAGTAGAGCATTGCAG------GAAGGATGCATTACTCGGGAATGGAATGCATAACAATGGG-----------------CAAGGACC
virilis ---------------G----------------------AG--------A------G---------TTACTTA-----GTAATGCATAACAATGAGCGCAGTTGAGGCTGAAACTGAAATT
mojavensis ---------------T----------------------TG--------A------G---------TTACTTA-----GTAATGCATAACAATGAGAGCGAGAGACAGTGAAACCGAAATT
grimshawi ---------------G----------------------AG--------A------G---------TTACTTA-----GTAATGCATAACAATAAG-----TTGAGGCTGAAATTGAGACT
Summary RRRRRMMMMMMMMMRRRRRRRRRRRRRRRRRRMMMMMMMMMBBRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBBBBBBBBB
melanogaster GGGA---------------C----------------------------AGATCGA---AAAGCTGGCCTGGT----------TTCTCG--------CTGTGT------------------
simulans GGGA---------------C----------------------------AGATCGA---AAAGCTGGCCTGGT----------TTCTCG--------CTGTGT------------------
sechellia GGGA---------------C----------------------------AGATCGA---AAAGCTGGCCTGGT----------TTCTCG--------CTGTGT------------------
yakuba GGGA---------------C----------------------------AGATCGG---AGA-------TGGTGTGTGTGTGCTTCTCG--------CTGTGT------------------
erecta GGGA---------------C----------------------------AGATCGG---TGA-------TGGT----------TTCTCG--------CTGTGT------------------
ananassae --------------------------------------------------------------------AGGT----------TGCTTG--------CTGGGT------------------
pseudoobscura AGGG---------------TTCCGTTTCGCGAGATGAGGTTCTTTGACGGTTCTT---TGA-------CGGT----------TCCTTGACGGTTCCCTGTGT--------------GCTC
persimilis AGGG---------------TTCCGTTTCGCGAGATGA-----------GGTTCTT---TGA-------CGGT----------TCCTTGACGGTTCCCTGTGT--------------GCTC
virilis GAAATGTTTGATGCCAA--G----------------------------GGTTTTGGCATTGACTAGAACTCG----------TCCTGG--------TCTGGT--------------GTCC
mojavensis GAAA---TTGAAATTGAGCG----------------------------AGATCTG---TAGGTTGAAGGTTT----------CCTTCA--------TCCAGCCATCCATCCATCCAGCCA
grimshawi GAAATGCTGTTTGCCGA--A----------------------------GGTTT-----TCAGCCACAACGTT----------TTTCCA--------AGGGTT--------------CTCA
Summary BBMMMMMMMMMRRRRRRRRRMMMMMMMMMMMMMMMMMMMMMMMMMMMBBBBRRRRRRRRRRRRRRRRRRRRRRRRRRRBBBBBBRRRRRRRRRBBBBBBRRRRRRRRRRRRRRRRRRBBB
melanogaster ---GTGCCGT-------------------GTTAATCCG-TTTGCCATCAGCGAGATTATTAGTCAA--------------------------------------TTGCAGTTG-------
simulans ---GTGCCGT-------------------GTTAATCCG-TTTGCCATCAGCCAGATTATTAGTCAA--------------------------------------TTGCAGTTG-------
sechellia ---GTGCTGT-------------------GTTAATCCG-TTTGCCATCAGCGAGATTATTAGTCAA--------------------------------------TTGCAGTTG-------
yakuba ---GTGCCGT-------------------GTTAATCCG-TTTGCCATCAGCCAGATTATTAGTCAA--------------------------------------TTGCAGTTA-------
erecta ---GTGCCGT-------------------GTTAATCCG-TTTGCCATCAGCCAGATTATTAGTCAATTG---------------CAGTCGCAGTCGC-----AGTTGCAGTTG-------
ananassae TCCAGGCCAT-------------------GTTAATCCC-TTTTCCATCATCCAGATTATTAGTCAATTTTCAATATGCGCGACCCAGTTTCATTTTC-----ATTTTCAGTTT-------
pseudoobscura TCTGCTCTGT-------------------GTTAATCCG-TTTGCCATCAGCAAGATTATTAGTCAA------------------TTTTCATATTTCCAGTCGAGTCGCAGTTT-------
persimilis TCTGCTCTGT-------------------GTTAATCCG-TTTGCCATCAGCAAGATTATTAGTCAA------------------TTTTCATATTTCCAGTCGAGTCGCAGTTT-------
virilis TGTGTGCTGT---GTCCTGTGTCCTGTGCGTTAATCCG-TTTGCCATCAGCGACATTATTAGTCGA------------------TTTTCTCA----------GTTTGGCTCAG-------
mojavensis TGGGTTTGGC---ATTGAGCTGCTTGTGCGTTAATCCG-TTTGCCATCAGCGACATTATTAGTCGA------------------TTTTACAA--------AGATTTTGAGCAA-------
grimshawi TCGGCATTGACTGGTTCAGAATCCTGTGCGTTAATCCGTTTTGCCATCAGCGACATTATTACTCTA------------------TTTTCCATTTCTCTCTAAAATTTGAACATTTTCTCA
Summary BBBBBBBBMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMRRRRRRRRRMMMMMMMMMBBBBBBBBBBMMMMMMMMMM
melanogaster -------------------------------CA------------------GCGTTTCGCTT---T-----CGTCCTCGTT------------------------------TCACTTT--
simulans -------------------------------CA------------------GCGTTTCGCTT---T-----CGTCCTCGTT------------------------------TCACTTT--
sechellia -------------------------------CA------------------GCGTTTCGCTT---T-----CGTCCTCGTT------------------------------TCACTTT--
yakuba -------------------------------CA------------------GAGTTTCGCTT---T-----CGTCCTCGTT------------------------------TCACTTT--
erecta -------------------------------CA------------------GGGTTTCGCTTTCCT-----CGTCCTCGTT------------------------------TCACTTT--
ananassae -------------------------------CAGTTTGAGCCTGCCCTTTCGGATTTCACTT---TTGCAGTGTCCTGGTTCCAGTTACCGGTTACCATGTTACCAGGTTACCAGTTT--
pseudoobscura -------------------------------TG--------------------GTTTCACTT---T-----CCTCCTT-TG------------------------------CCACTTCTT
persimilis -------------------------------TG--------------------GTTTCACTT---T-----CCTCCTT-TG------------------------------CCACTTCTT
virilis ------------------------------------------------------TTTCACTT---T-----CGCC----TT------------------------------GCGGATA--
mojavensis -------------------------------AC------------------AGTTTTCACTT---T------------------------------------------------------
grimshawi ACCGTTTGCATATCCATTTCCATTTTCATTTTC------------------CATTTTCACTT---T-----CGCC-----T------------------------------GCGGATA--
Summary MMMMMMMMMMMMMMMMMRRRRRRRRRMMMMMMMMMMMMMMMMMMRRRRRRRRRBBBBBBBRRRRRRRRRBBBBBBBBBMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMBRRRRR
melanogaster ---------------------------------------------------------CGAGTTAGACTTTATTGCAGCATCTTG----AACAATCGTC----------------------
simulans ---------------------------------------------------------CGAGTTAGACTTTATTGCAGCATCTTG----AACAATCGTC----------------------
sechellia ---------------------------------------------------------CGAGTTAGACTTTATTGCAGCATCTTG----AACAATCGTC----------------------
yakuba ---------------------------------------------------------CGAGTTAGCCTTTATTGCAGCATCTTG----AACAATCGGC----------------------
erecta ---------------------------------------------------------CGAGTTAGACTTTATTGCAGCATCTTGCAGCAACAATCGGC----------------------
ananassae ---------------------------------------------------------CGAGTTAGATTTTATTGCAGCATCTTG----AACAATCGAC----------------------
pseudoobscura GCCTTGCCTCATGTGGATGCCGATGCCGATGCCGTTGCCGTTGCCGTTGCCGACCGACGAGTTAGATTTTATTGCAGCATCTTG----AACAATCAAC----------------------
persimilis GCCTTGCCTCATGTGGATGCCGATGCCGATGCCGTTGCCGTTGCCGTTGCCGACCGACGAGTTAGATTTTATTGCAGCATCTTG----AACAATCAAC----------------------
virilis ---------------------------------------------------------CGAGTTAGATTTTATTGCAGCATCTTG----AACAATCGCT----------------------
mojavensis ---------------------------------------------------------CGAGTTAGATTTTATTGCAGCATCTTG----AACAATCGCTGCG--------------TCAGA
grimshawi ---------------------------------------------------------CGAGTTAGATTTTATTGCAGCATCTTG----AACAATCGCCTCAACTCGAACTCGAACTCGAA
Summary RRRRMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMRRRRRRRRRRRRRRR
melanogaster ----------------------GCA---------GTTTGGTAACACGCT--G---------TGC---------CAT--------------------ACTTTC------------------
simulans ----------------------GCA---------GTTTGGTAACACGCT--G---------TGC---------CCT--------------------ACTTTC------------------
sechellia ----------------------ACA---------GTTTGGTAACACGCT--G---------TGC---------CCT--------------------ACTTTC------------------
yakuba ----------------------GCA---------GTTTGGTAACACGCT--G---------TGC---------CCTAGCCCT--------------ACTTTCCCCGG-CCGATTCAG-CG
erecta ----------------------GCA---------GTTTGGTAACACGCT--G---------TGC---------CCTTCCACTTT----------CCACATTCCACGGCCCAATTCGG-CG
ananassae ----------------------TCGAAGTTTGGTATTTGGTAACACGCTGGG---------TGC---------CCTTCTCTCTG------------ACTTTC------------------
pseudoobscura ---------------------TGGA---------ATTTGGTAACATGCT--G---------CGCGG-------CCTAACCCTGG--AGATTGCTCTACTTTC---GCCTCAATTGAATCG
persimilis ---------------------TGGA---------ATTTGGTAACATGCT--G---------CGCGG-------CCTAACCCTGG--AGATTGCTCTACTTTC---GCCTCAATTGAATCG
virilis --CGAACTTGG-AACTGAATATGGA---------TTTTGGACACATGCT--G---------TGCTGCGATTGCTCTAGTTTAAG------------GCCTAT---GGCTAAGGTG-----
mojavensis GACAAACTAGGAAATTGGATGTGGA---------TTTTGGACACACGCT--G---------TG------TCTCTCTACTCTCAGTCT---------GCACTC---AGTCGCCGTG-----
grimshawi CGCGAACTCGG-AATTGGATGTGCAG--------TTTTGGAACCATGCT--GGGTTTTGTTTGCTGTCATTGCTCTAGTTTTGCTTTCATTTCCTCACTCTT---AGCTGGTGAT-----
Summary RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBBBBMMMMMMMMMRRRRRRRRRMMMMMMMMMMMMMMMMMMRRRRRRRRRMMMMMMMMMBBB
melanogaster -ATTTAGACGGAAT-CGAGGGACCCTGGACTAT-----AATCGCACAACGA------------------GACC--GGGTTG------CGAAGTCA----GGGCATTCCG------CCGAT
simulans -ATTTAGAGGGAAT-CGAGGGACCCTGGACTCT-----AATCGCACAACGA------------------AACC--GGGTTG------CAAAGTCA----GGGCATTCCG------CCGAT
sechellia -ATTTAGACGGAAT-CGAGGGACCCTGGACTCT-----AATCGCAAAACGA------------------AACC--GGGTTG------CCAAGTCA----GGGCATTCCG------CCGAT
yakuba GATTTAGACGGAAT-CGAGGGACCCT-GACTGCACTCGGTTCGTTATATGAAACCGAAAACAAAACCTTAACC--GGGTTG------CAAAGTCA----GGGCATTCCGACGATCTCGCC
erecta GATTTAGACGGAAT-CGAGGGACCCT-GACTAT-----GTTCGCATAATGAAAGCGAAACCA-------AACC--GGGTTG------CAAAGTCA----GGGCATTCCA------TCGCC
ananassae -AATTGAACCGAAT-TAAATG------GAATTC-----CTTGGCCAGACAAACCAGAAAACCAGA----AACG--GGGTTGCAGAGTCAGAGTCA----GGGCTTTCCG-----------
pseudoobscura GAGTTAGGCGGAAGACGGCGGACCCT----TGC------------------------------------GACCAAGGGTTGTCTCC-TGGCCTCA----GGAGTTTCCA------CAGTC
persimilis GAGTTAGGCGGAAGACGGCGGACCCT----TGC------------------------------------AACCAAGGGTTGTCTCC-TGGCCTCA----GGAGTTTCCA------CAGTC
virilis -ATTTAGGCCGAAA-T---------T--TTCAT-----TGTCTTTTACTCAAGCT--------------GACC--GGGTTA------C--CCTCA----GGCAGC-------TTTTCGAC
mojavensis -CTCTAG-------------------------------TTTCGCTCGACTAAGGT--------------GATT--TAGTT-------------------GGAATT---------------
grimshawi -TTTTAGGCAGAAT-TCCGCTGTCCT--GGCAT-----TGTCATTGAATC--GCC--------------GACC--GGGTTA------C--CCTCAAACTAGGTTT-------TTTTCGAC
Summary BBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRMMMMMMMMMRRRRRRRRRMMMMMMMMMBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMM
melanogaster CTA------GCCATCGCCATCTTCTGCGGGC-------GTTTGTTTGTTTGTTT--GC-----------TGGGATTA----------GCC-AAGGGCTTGACTTGGAATCCA--------
simulans CTA------GCCATCGCCATCTTCTGCGGGC-------GTTTGTTTGTTTGTTT--GC-----------TGGGATTA----------GCC-AAGGGCTTGACTTGGAACCCA--------
sechellia CTA------GCCATCGCCATCTTCTGCGGGC-------GTTTGTTTGTTTGTTT--GC-----------TGGGATTA----------GCC-AAGGGCTTGACTTGGAACCCA--------
yakuba ATATCCATCGCCATCGCCATCTTCTGCGGGC-------GTTTGTTTGTTTGTTT--GC-----------TGGGATTA----------GCC-AAGGGCTTGACTTGGAACCCG--------
erecta GTCGCCATCGCCACCGCCATCTTCTGCGGGC-------GTTTGTTTGTTTGTTT--GC-----------TGGGATTA----------GCC-AAGGGCTTGACTTGGAACCCA--------
ananassae CTA-----------------------------------GCTTGTTTGTTTGTTT--GC-----------TCGGATTA----------GCCTTAAGGCTTGACTTGG--------------
pseudoobscura AAC------GCTTTCGCTGGTTTGTTT-----------ATTTGTTTGTTTGTTTTAGC-----------CAGGATTA----------GCCCGAGGGCTTGACTTGGAACCCGACCAAAGC
persimilis AAC------GCTTTCGCTGGTTTGTTT-----------ATTTGTTTGTTTGTTTTAGC-----------CAGGATTA----------GCCCGAGGGCTTGACTTGGAACCCGACCAAAGC
virilis T----------TGCCG-GACTTTCCACAGGCCACAACATTTTGTTTATTTGTTT--AT--------------------------------------------------------------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi TTT------GCTGGCG-GAGTTTCCACATGCCTCCGT-TTTTGTTTATTTGTTT--GTTTTGCGGATTTAGAGATTAGAGAAAAGGGGCC-AATGGCTTTAGACTGATGC----------
Summary MMRRRRRRRRRBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBBMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBMMMMMMMMMMMMMM
melanogaster ----------------------------------ATCCCGATCCCTAGCCCGATCCCA------------------ATCCCAA-TCCCAATCCC--TTGTCCTTTTCATTAGAAAGTCAT
simulans ----------------------------------ATCCCGATCCCTAGCCCG------------------------ATCCCAA-TCCCAATCCC--TTGCCCTTTTCATTAGAAAGTCAT
sechellia ----------------------------------ATCCCGATCCCTAGCCCG------------------------ATCCCAA-TCCCAATCCC--TTGCCCTTTTCATTAGAAAGTCAT
yakuba ----------------------------------ATCGT------------------------------------------------------------CCCTTTTCATTAGAAAGTCAT
erecta ----------------------------------ATCCCAATCCCAATCCCAATCCCAAAGCCAATCCCAGTGCCCATCCCGA-TCGCAGTCCC--ATGCCCTTTTCATTAGAAAGTCAT
ananassae -----------------------------------TCCTGGCCCAGGTTCCA------------------------ATCCAGAGTCCCAAGCCT--TCGCTGATTTCATTAGAAAGTTAT
pseudoobscura CAAGGGCTTTAGGGCATGCTCAAAAGATCCCTATATCCCTATCCCTGTCTCG------------------------ATCCCTA-AACCGATCCCATTTGGCAATTTCATTAGAAAGTCAT
persimilis CAAGGGCTTTAGGGCATGCTCAAGAGATCCCTATATCCCTATCCCTGTCGCG------------------------ATCCCTA-AACCGATCCCATTTAGCAATTTCATTAGAAAGTCAT
virilis --------------------------------------------------------------------------------------CTGATCCA--CACGCATTTTCATTAGAAAGCCAT
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi --------------------------------------------------------------------------------------CTGATCTG--CTCGCCTTTTCATTAGAAAGTCAC
Summary MMMMMMMMMMMMMRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBMMMMMMMMMRRRRRRRRRMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBMMMMMMMMMBBBBBBBBBBBBBBBBB
melanogaster AAAA-ACACATAATAAT--GATGTCGAAGGGATTAGG-----GGCGCG-----CAGGTC----------CAGGCAACGCAATTAACGGACTA--GC-GAACTGGGTTATTTT--------
simulans AAAA-ACACATAATAAT--GATGTCGAAGGGATTAGG-----GGCGCG-----CAGGTT----------AAGGCCGCGCAATTAACGGACTA--GC-GAACTGGGTTATTTT--------
sechellia AAAA-ACACATAATAAT--GATGTCGAAGGGATTAGG-----GGCGCG-----CAGGTT----------AGGGCCGCGCAATTAACGGACTA--GC-GAACTGGGTTA-TTT--------
yakuba AAAA-ACACATAATAAT--GATGTCGAACGGATTAGG-----GACGCGACTCGCAAGTC----------CAGGCAGCGCAATTAACGGACTA--GC-GAACTGGGTTA-TTT--------
erecta AAAA-ACACATAATAAT--GATGTCGAACGGATTAGC-----TGCGCG------CAGTC----------CAGGCAGCGCAATTAACGGACTA--GC-AAACTGGGTTA-TTTCTATTTTT
ananassae AAAA-ACACATAATAAT--GACGTCGAA-GGATTACG-----GGC------------------------CAGGCAGGCCAATTAACGGACTACGGC-GGACCGGGTTATTTT--------
pseudoobscura AAAACACACATAATAATGAGATGTCGAAGGGATTAAGATTAAGGGACG-----CACACA----------CAGGCAGCAGGATTAACGGACTA--ACGGAATCGGGTTA-TTT--------
persimilis AAAACACACATAATAATGAGATGTCGAAGGGATTAAGATTAAGGGACG-----CACACA----------CAGGCAGCAGGAT--------------------------------------
virilis AAAA-ACGCATAATTAT--GGCA--ACAGGGATTAGC-----CACACG-----CACATATATGTATATGTATATGACATAATTAGCGGATTC--TG-AAATTGGGTTA-TTT--------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ACAA-ACGCATAATGAT--GACA--AGGGGGATTAAG-----CTCACA-----TACCTA----------CACATAACCTAATTAGCGGATTT--AC-AAATTGGTTTA-TTT--------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBBBBBBRRRRRRRRRMMMM
melanogaster ---TTTGC-------------------------GCCGA-----------CTTAGCCCTGATCCGCGAGCTTAACCCGTTTTGAGCCG----GGC------AGCAGGTAG-----------
simulans ---TTTGC-------------------------GCCGA-----------CTTAGCCCTGATCCGCGAGCTTAACCCGTTTTGAGCCG----GAC------AGCAGGTAG-----------
sechellia ---TTTGC-------------------------GCCGA-----------CTTAGCCCTGATCCGCGAGCTTAACCCGTTTTGAGCCG----GTC------AGCAGGTAG-----------
yakuba ---TTTGC-------------------------GCCGA-----------CTTAGCCCTGATCCGCGAGCTTAACCCG-TTTGAGCCG------CCAGTCGAGCAGGTAG-----------
erecta TTATTTTC-------------------------GCCGA-----------CTTAGCCCTGATCCGCGAGCTTAACCCG-TTTGAGCCG------C------AGCAGGTAG-----------
ananassae ---TTTGC-------------------------GCGGA-----------CTTAACCCTAATCTGCCAGCTCAGCCCTTTTTGAGCCGCTCCGTC------GGCAGGTAG-----------
pseudoobscura ---TTTGC-------------------------GCTCAACCGGACGGAGCTTAACGCTAAGCCACAAGCTTAACCCCTTGTGGGCCG------C------GGCAGGTAAATCGATGACCG
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis ---TTGTCCTCTTTTTTCTTGG-----------CCCAG-----------CTTAACCCTAAGCCA-------AACCCAAGCCTAG-------------CCAAGCAGGTAA-----------
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ---TTTCCCTTTTTTTTATTGTAGTTGGTCTGCCCCAG-----------CTTAAACCCAAGCCACTGCATCAGGCCAATCCAAA------------------------------------
Summary MMMMMRRRRRRRRRRRRRRRRRRMMMMMMMMMBBMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBBBBMMMMMMMMMRRRRRRR
melanogaster -------TTG-TGGGTGGAC----------CCCACG-----------------------------ATTTTT---TTGGCCAAA--------------CCTCCAAGCTAACTTGCG--CAA
simulans -------TTG-TGGGTGGAC----------CCCACT-----------------------------ACTTTT---TTGGCCCAA--------------CCTCCAACCTAACTTGCG--CAA
sechellia -------TTG-TGGGTGGAC----------CCCACG-----------------------------ACTTTT---TTGGCCCAA--------------CCTCCAACCTAACTTGCG--CAA
yakuba -------TTC-CTG----------------CCCAC------------------------------ACTTTT---TTCGCCCAT-----------------CCATCCCCGCTTGCG--CAA
erecta -------------------------------------------------------------------------------CCAT--------------CC-CCATCCTGGCTTGCG--CAA
ananassae -------CTA-CCATCAACCA---------CCCACT-----------------------------CCTCCA---CTGGCCG-------------------CCCCACTCGCCCCCA--GAA
pseudoobscura ATGTCGCTTG-CGCAAGGCC----------CCTACT-----------------------------ACTCCC---CTCCCATAT--------GACACCCCACTAACCCTGCCCCCG--CCA
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis -------CGGCCAGGCGGACAGCTCAATAGCTTACGCAAGCAAAACAAAAGTCAAATAAAGAAAAACTTTCAAGTTGGCAGCACTTTAGGTACCACCCCCCCACCCCCACCACCAATCCG
mojavensis ------------------------------------------------------------------------------------------------------------------------
grimshawi ------------------------------------------------------------------------------------------------------------------------
Summary RRMMMMMMMMMBRRRRRRRRRMMMMMMMMMBMMMMMMMMMRRRRRRRRRMMMMMMMMMRRRRRRRRRRRRRRRRRRRRRRRRRRRMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBB
melanogaster GTGGCAAGTGGCCGGTTTGCTGGCCCAAAAGA------------------GGAGGCACTATCCCGGTCCTGGT-ACAGTTG-GTA-CGCTGGG---AATGATTATATCATCATAATAAAT
simulans GTGGCAAGTGGCCGGTTTGCTGGCCCAGGAGA------------------GGAGGCACTATC---GCCCTGGT-ACAGTTG-GTA-CGCTGTG---CATGATTATATCATCATAATAAAT
sechellia GTGGCAAGTGGCCGGTTTGCTGGCCCAGGAGA------------------GGAGGCACTATC------------ACAGT---GTA-CGC--TG---CATGA-TATATCATCATA--TAAT
yakuba GTGGCA-------AGTTCGCTGCCCCAGGAAAGGAGGAGGATGAGGAGGAGGAGGCACTCTGTCTGGCCTGGT-ACAGTCG---C-CTCTGGG---CATGATTATATCATCATAATAAAT
erecta GTGGCA-------GGTTCGCTGCCCCAGGAGAGCCGT-------------GGAGGCACTCTGGCTGGCCTGGT-ACAGTTG---C-CGCTGGG---CATGATTATATCATCATAATAAAT
ananassae ATGGCA--------TCTTTTTGGTACAGTT--------------------------------------------TCCTCCG-GTC-CGCTCGT---CGTGATTATATCATCATAATAAAT
pseudoobscura TCTCCA-------CCACCACTGTACTATATGT------------------------------------------ACAGTTGCCTC-CTCTCTG---GATGATTATATCATCATAATAAAT
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis TCGCCA----------GTGCTGCCCCATGTAA------------------GTGCGC-----------TGTGGGTACAGTTG-CGC-CTTTAGGCAACATGATTATATCATCATAATAAAT
mojavensis ----------------------------------------------------------------CGCTCTGGGTACAGTTG-CGC-CTTTAGGCAACATGATTATATCATCATAATAAAT
grimshawi -------------------------------------------------------------------TCTGGGTACAGTTG-CGCATTTTGGGCAACATGATTATATCATCATAATAAAT
Summary BBBBBRRRRRRRRRBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRMMMMMMMMMBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster GTTTTGCCCAA--CGAAACCGA-------AAACTTTTCAAATTAAGTCCCGGCAACTGGGTTCCC-AT--------------TTTC----------------------------------
simulans GTTTTGCCCAA--CGAAACCGA-------AAACTTTTCAAATTAAGTCCCGGCAACTGGGTCCCC-AT--------------TTTC----------------------------------
sechellia GTTGC-CACGA--CGAA-----------------CTTCATAGTCCGCACTGG--------------------------------TC----------------------------------
yakuba GTTTTGCCCAA--CGAAACCGA-------AAACTTTTCAAATTAAGTCCCGGCAACTGGGTCCCC-AT-TTCCATTTTCCATTTCCCGCTTGCTTCCCCTTTTGCTTTTCCTTTCCATTT
erecta GTTTGGCCCAA--CGAAACCGA-------AAACTTTTCAAATTAAGTCCCGGCAACTGGGTCCCC-ATATCCCGTATCCCATTTTC----------------------------------
ananassae GCTTCGCCGAAACCGAAACCCA-------AAACTTTTCAAATTTAGTTCCAG--------------AG--------------CATT----------------------------------
pseudoobscura GTTTTTCCCAA--CGAAACTGAAACCGAGAAACTTTTCAAATTAAGTTCCGA---------------------------------C----------------------------------
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis GTTTGCCGCAA--CTAAACTG--------AAACTTTTCAAATTAAGTTTCAACAACTGCGCCCCC-AA----------AAGTATTT----------------------------------
mojavensis GTTTGCCGCAA--CTAAACTG--------AAACTTTTCAAATTAAGTTTCAACAACTGCGCCCCC-AA----------AAGTATTT----------------------------------
grimshawi GTTTGCCGCAA--CTAAACTG--------AAACTTTTCAAATTAAGTTTCAACAACTGCGCCCCCAAA----------AAGTATTT----------------------------------
Summary BBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBRRRRRRRRRRRRRRRRRRRRRRRRRRRMMMMMMMMMRRRRRRRRRRR
melanogaster -CATTT-TCCATGT-TCT--GCGGGCAGGGGCG------------------------------------GCCATTATC-TCGCTACAGCA-------GTTCCCAAATGGTTATGGCTGGA
simulans -CATTT-TCCATGT-TCT--GCGGGCAAGGGCG------------------------------------GCCATTATC-TCGCTACAGCA-------GATCCCAAATGGTTATGGCTGGA
sechellia -CATTCATTCATG--TCT--GC-GGCAGGCGCA-----------------------------------------TATC-TCGCTACAGCT-------GATCCAAAATGGTTATGGCTGGA
yakuba TCCTTT-GCCACGT-TCT--CCGGGCACGGGCG------------------------------------GCCATTATC-TCGCTACAGCATGCTACGGATCCCAAATGGTTATGGCTGGA
erecta -CCTTT-TCCACGT-TCTGCCCGGCAAAAGGCG------------------------------------GCCATTATC-TCGCTACAGCA-------GATCCCAAATGGTTATGG-----
ananassae -CATTT-CTC------CC--CCGAAACAGCGCT------------------------------------GCCATTATC-CCAC--------------AAAACAAAATGGTTTTGGGGCGA
pseudoobscura -CCGCC-GCCCCGC-CCC--CCGAAATTGTGCT-------------------------------------CCATTATCATAGATATACTG-------CCTGGAAAATGGTAATG--CGAA
persimilis ------------------------------------------------------------------------------------------------------------------------
virilis -CATTG-TTTATGCATGT--GCGGCTGTCTGTGTGTGTGTGTGTGTG------------------TGTGGGCGTTGTC-T----------------------------------------
mojavensis -CATTG-TTTATGCATGT--GCGGCTAT--------------------------------------------------------------------------------------------
grimshawi -CATTG-TTTATGCATGT--GTGTGTGTGCGTGTGTGTTTGTGTGTGTGTGCGTAGGGTGGTCTCTGTGGGCGTTGTC-C----AAAACT-------TTTGTTTTATGAGCACAGATAAA
Summary RRRRRRRBBBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMRRRRRRRRRMMMMMMMMMMMMMMMMMMBBBBBBBBBBBRRRRRRRRRRRRRRRRRRBBBBBBBBBBRRRRRRRRR
melanogaster CACCCCT------GCCGCCGC------T-CCAACG-GGGTGGATGAAGCCCCCAAAACCCGAAAG-TCATGGCAGCCATGG--------CAGTGTGGGGCTGTTAAACGTGCGGC--ATA
simulans CACCCCT------GTCGCCGC------T-CCAACG-GGGTGGATGAAGCCCCCAAAACCCGAAAG-TCATGGCAGCCATGG--------CAGTGTGGGGCTGTTAAACGTGCGGC--ATA
sechellia CGCCCCT---------GCCGC------T-CCAACG-GGGTGGATGAAGCCCCCAAAACCCGAAAG-TCATGGCAGCCATGG--------CAGTGTGGGGCTGTTAAACGTGCGGC--ATA
yakuba CACCCCT---------CCCGC------T-CCAACG-GGGTTGATGGAGCCCCCAAAACCCAGCCAGCCATGGCAGCCACGGCAGCTCCACAGTGTGGGGCTGTTAAACGTGCGGC--ATA
erecta -----CT---------CCCGC------TGCCACCG-GGGTGGATGAAGCCCCCAAA----------CCTTGCCGCCCATTCCAGCTCGACAGTGTGGGGCTGTTAAACGTGCGGC--ATA
ananassae GGTCCAT---------CCCGAGGGTGGT-CC--CG-GGATGAATAA--------------------ACTTTGCAGCTCC----------CAGTGTGGGACTGTTAAACGTGCGGC--ATA
pseudoobscura TCCCCCTCTACCAGTGCCCCC------G-CCAACGCTGGTGGGTGGTGT----------GGTGTG-GTGTGGCA----------------AGTGTGAGGCCGTTAAACGTGCTGC--ATT
persimilis ------------------------------------------------------------------------------------------AGTGTGAGGCCGTTAAACGTGCTGC--ATT
virilis -------------------------------------------------------------------------------------TGGA-AGTGTGAGCCCGTTAAACGTGCGGCATATA
mojavensis ------------------------------------------------------------------------------------------AGTGTGAGCCCGTTAAACGTGCGGC--ATA
grimshawi CTTCATT---------TACTG------T-----TG-AAGCTGCT--AGCTACTACAACACGCCAC-CCTCTGCCACTC-------GGCA-AGTGTGAGGCCGTTAAACGTGCGGC--ATA
Summary RRRRRRRRRRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBBBBBBBBBBRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster ATATTAAGACTTCATAAAAGCGCAAATAATTC-GCT-GGCA--GGC----GATCGATAA-----------------------TACA-----------TACATACAAATATATAG------
simulans ATATTAAGACTTCATAAAAGCGCAAATAATTC-GCT-GGCA--GGC----GATCGATAA-----------------------TACA-----------CACAT----ATATATAG------
sechellia ATATTAAGACTTCATAAAAGCGCAAATAATTC-GCT-GGCA--GGC----GATCGATAA-----------------------TACA-----------CACAT----ATATATAG------
yakuba ATATTAAGACTTCATAAAAGCGCAAATAATTC-GCT-GGCA--GGC----GATCGATAACTA--------------CACATGTACA-----------TACAT----ATCTATATCTATAT
erecta ATATTAAGACTTCATAAAAGCGCAAATAATTC-GCT-GGCA--GGC----GATCGATAAATA--------------CATATGTACA-----------CACAT----ATACATAG------
ananassae ATATTAAGACTTCATAAAAGCGCAAATAATTT-GCT-GGCC--GACTCCGGATCGATAA-----------------------------------------AT----ATATGTAC----TC
pseudoobscura ATATTAAGACTTCATAAAAGAGCAAATAATTC-GCTGGGCA--AGCATC-GATCGATAAATGCTACTCTATGTACCCCCGTGAACA-----------TGTAT----GTACATGGCTATGG
persimilis ATATTAAGACTTCATAAAAGAGCAAATAATTC-GCTGGGCA--AGCATC-GATCGATAAATGTTACTCTATGTACCCCCGTGGACA-----------TGTAT----GTACATGGCTATGG
virilis ATATTAAGACTTCATAAAAGAGCAAATTATTTGGCT-GCCT--GTG----GATCGATAT-----------------------GGCA----------------------------------
mojavensis ATATTAAGACTTCATAAAAGAGCAAATTATTTGGCT-GCCT---TC----GATCGATAT-----------------------GCCAAACT--GCCAGCGAGT----G-----AG------
grimshawi ATATTAAGACTTCATAAAAGAGCAAATTATTTGGCT-GGCAACATC----GATCGATAT-----------------------GGCAAACTCCACCAGCAAAC----ACACCCAG------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBRRRRRRRRRMMMMMMMMMRRRRRRRRRMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
melanogaster ----TGGGATACACA------------CACTCTCTG-------CCGGCAAACACACACCACCC----------GAC-----C--------------------------------------
simulans ----TGGGATACACA------------CACTCTCTG-------CCGACAAACACACACCACCC----------GAC-----C--------------------------------------
sechellia ----TGGGATACACA------------CACTCTCTG-------CCGACAAACACACACCACCC----------GAC-----C--------------------------------------
yakuba CTACTGGGATACACA------------------CTGGGCTGCACT--------------ACCC----------GAC-----C--------------------------------------
erecta ----TGGGATACACAC-----T---GGCAATCCCTGGGATGCAGTGGC-GACAAGCAGCACCC----------G-C-----C--------------------------------------
ananassae CGCCTCGGATATGTAC-----TGAGGATGCTC-CCGTAGAGCAGCAGCCAGAAGCCAGCATCC----------AGCAGCCAC--------------------------------------
pseudoobscura CTA-TGGCATCCATGTACATATGTATGTACATAATGGGAGTTGGTGAAAGCAACCAACCACCCTACCATCCTGTAC-----T----------CTCTTCCTTACTCCTTACTCCTC-----
persimilis CTA-TGGCATCCATGTACATATGTATATACATAATGGGAGTTGGTGAAAGCAACCAACCACCC----------TAC-----CATCCTGTACTCTCTTCCTTACTCCTTACTCCTTGGTCC
virilis -----------------------------------------------------------ACCT----------CCT-----C--------------------------------------
mojavensis ----CGGGA---------------------------------------------------------------------------------------------------------------
grimshawi ----TGGCG-----------------------------------------TGCTGCTTCTCTT----------ACT-----C--------------------------------------
Summary BBBBBBBBBBBMMMMMMMMMRRRRRRRRRBBBBMMMMMMMMMRRRRRRRRRBBBBBBBBRRRRRRRRRRRRRRRRRRRRRRRRRRRMMMMMMMMMMMMMMMMMMRRRRRRRRRRRRRRRR
melanogaster -------CGACTG---AGCG-----------------------GCATAATGCCATATCATTCT------TGATGAAGCCGATAAAATCCCATTATTAAGGGGGC-CCG-CCCGTCCCGCT
simulans -------CGACTG---AGCG-----------------------GCATAATGCCATATCATTCT------TGATGAAGCCGATAAAATCCCATTATTAAGGGGGC-CCG-CCCGTCCCGCT
sechellia -------CGACTG---AGCG-----------------------CCATAATGCCATATCATTCT------TGATGAAGCCGATAAAATCCCATTATTAAGGGGGC-CCG-CCCGTCCCGCT
yakuba -------CGACTG---AGCG-----------------------GCATTATGCCATATCATTCT------TGATGAAGCCGATAAAATCCCATTATTAAGGGGG--CCG-CCCGTCCCGCT
erecta -------CGACTG---AGCG-----------------------GCATAATGCCATATCATTCT------TGATGAAGCCGATAAAATCCCATTATTAAGGGGGC-CCG-CCCGTCCCGCT
ananassae -------CGCCCGTACGGCA-----------------------GCATTATGCCATATCATTCT------TGATGAAGCCGATAAAATCCCATTATTAAGGGGGC-CCG-CCCGTCCCGCT
pseudoobscura -TCCGGACTGCTG---GGCA-----------------------GCATTATACCATATCATACT------TGATGAAGCCGATAAAGTCGCATTATTAAGGGGGCACCT-CACGTCTCGCT
persimilis GTCCGTACTGCTG---GGCA-----------------------GCATTATACCATATCATACT------TGATGAAGCCGATAAAGTCGCATTATTAAGGGGGCACAT-CACGTCTCGCT
virilis -------CACCAG---CGCTCGTTCTCCATCTCGGTCTGT---GCATTATGCCATATCATTCTTTTGCCTGATGAAGCCGATAAAATCCCATTATTAAGGGGGC-CACTCACGTCTCGTT
mojavensis -------------------------------------------GCATTATGCCATATCATTCTTTTGCCTGATGAAGCCGATAAAATCCCATTATTAAGGGGGC-CACTCACGTCTCGTT
grimshawi -------CGCCAT---CGCCA--TCGCCATCGTCGTCTCTGTG-CATTATGCCATATCATTCTTTTGCCTGATGAAGCCGATAAAATCCCATTATTAAGGGGGC-C---CACGTCTCGTT
Summary RRMMMMMMMMMBBMMMMMMMMMMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
melanogaster CGCTCCTGCGGAG-CAACC-GCCTGCGGGCGGGCGAGACAAAAGATTCGCTCATCCGCTATGAATACC--AAATCGGAAC------TCTCTCTC-----------------------TCT
simulans CGCTCCTGCGGAG-CAGCC-GCCTGCGGGCGGGCGAGACAAAAGATTCGCTCATCCGCTATGAATACC--AAATCGGAG--------CTCTCTC-----------------------TCT
sechellia CGCTCCTGCGGAG-CAGCC-GCCTGCGGGCGGGCGAGACAAAAGATTCGCTCATCCGCTATGAATACC--AAAACGGGG--------CTCTCTC-----------------------TCT
yakuba CGCTCCTGCGGAG-CAGCC-GCCTGCGGGCGGGCGAGACAAAAGATTCGCTCATCCGCTATGAATACC--AAATCCGAAT----GTGTGCTCTC-----------------------TCT
erecta CGCTCCTGCGGAG-CAGCC-GCCTGCGGGCGCGCGAGACAAAAGATTCGCTCATCCGCTATGAATACC--AAATCCAAGTCAGCGCGCGCTCTC-----------------------TCT
ananassae CACTCGTGGAGGGTCCACC-GCCTGCGGACAGGCGAGACAAAAGATTCGCTCATCCGCTATGAATACC--AAAATA-----------CTCTCTCTTTTCGCCAGCTCCTGGCTCCTTTCT
pseudoobscura CGCTCTGGGGCGT-CCGCCTGCTTGCGGACAAGCGAAACAAAAGATTCGCTCATCCGCTATGAATACC--AAATTC-----------CTCTCTC-----------------------TTG
persimilis CGCTCTGGGGCGT-CCGCCTGCTTGCGGACAAGCGAAACAAAAGATTCGCTCATCCGCTATGAATACC--AAATTC---------CTCTCTCTC-----------------------TTG
virilis CGCACCCGTGGCG-CTGCCCGCTTGCGGACAAGCGAAACAAAAGATTCGCTCATACGCTATGAATATATGAAATCG-----------CACTCGCC----------------------TCC
mojavensis CGCACCCGTGGCG-CTGCCCGCTTGCGGACAAGCGAAACAAAAGATTCGCTCATACGCTATGAATATATGAAATCG-----------CATTCGCC----------------------TCT
grimshawi CACACCCGTGGCG-TCGCCCGCTTGCGGACAAGCGAAACAAAAGATTCGCTCATACGCTATGAATATATGAAATCGCAGC-------CAGTCGCCAGT-------------------TCT
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBRRRRRRRRRMMMMMMMMMRRRRRRRRRM
melanogaster CC--------------------------AGCTCGGGA------GTGC--------------CA--TGGCCAGCATGGCCAGGACCTCCTCATGGTCCTGCCGA-GCAGAGA---------
simulans CC--------------------------AGGTCGGGA------GTGC--------------CA--TGGCCAGCACGGCCAGGACCTCCTCATGGTCCTGCCGA-GCAGAGA---------
sechellia CT--------------------------AGGTTGGGA------GTGC--------------CA--TGGCCAGCACGGCCAGGACCTCCTCATGGTCCTGCCGA-GCAGAGA---------
yakuba CC--------------------------AGGTCGGCA------CTGC-----CATGGCCAGCA--GAGCCAGCATGGCCAGGACCTCCTCATGGTCCTCCCGA-GCAGAGA---------
erecta CT-----------------------------CCAGCA------CTCT--------------CG--GCACCAGCATGGCCAGGACCTCCTCATGCTCCTGGCGA-GCAGAGA---------
ananassae CC--------------------------AGGCTGGCC------TCTCCACCCCACCCCCACCC--CGGCCACCGTTGTTCCAGCCTCGTAAT--TGCTGCTGA-GCAGAGGCTCTTCCTT
pseudoobscura CCGTGCACACAAAGAGAGAGAGATGGAGAGAGAGAGAGAGAGCGAGC--------------GAGCGAGCGAGCTCCATGATAACTTGATTATGTTCT-----------------------
persimilis CCGTGCACACAAAGAGAGAGAGATGGAGAGAGAGAGA------GAGC--------------GA--GAGCGAGCTCCATGATAACTTGATTATGTTCT-----------------------
virilis CA-----CAGACTGACAGAGCGAGAGCGAGAGCAAGA------GAGC--------------GA--GA---------------------------TGCTGCTGGCGCTGCTG---------
mojavensis CG-----CAGCATGAACGAGCGACAGCGTGAGCGAGA------GAGA--------------AC--GAGCCAGA------GAGCATTGCTAGTGCTGCCGCTGCTGTTGCTG---------
grimshawi CA-------------------------------AAGA------GAGC--------------AA--AA---------------------TGATGCTGCTGCTCCCGCTGCTG---------
Summary MMMMMMMMRRRRRRRRRMMMMMMMMMBBBBMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMM
melanogaster -----ACGCG-----------GCTCCA----------------------------TCCCG-----CTGCTCCGGGTCCTGCT----------CCT-------------------------
simulans -----GCGCG-----------GCTCCA----------------------------TCCCG-----CTGCTCCGG-TCTCGTC----------TCT-------------------------
sechellia -----GCGCG-----------GCTCCA----------------------------TCCCG-----CTGCTCCGGCTCCTGCT----------CCT-------------------------
yakuba -----GCGCT-----------GCTCCC----------------------------ATCCA-----CTGCTCCT------GCT----------CCT-------------------------
erecta -----GCGCT-----------GCTCCA----------------------------TCCCG-----CTGCTCCT----CCGCT----------CCT-------------------------
ananassae TTCCTGTGTGGGTCAGGGAGAGCTCCA----------------------------TGCTGAGCGCCTTCGCCT----CAGCT----------CCT-------------------------
pseudoobscura -----CCGCC-----------TGTCCG----------------------------CCCC------CCGCTTGGCATCCTATTTTTTGTGTGCCCT-------------------------
persimilis -----CCGCC-----------TGTCCG----------------------------CCCC------CCGCTTGGCATCCTATTTTTTGTGTGCCCT-------------------------
virilis -----CTGCT-----------GCTCCATGATAACTTGATTATGCCTTG-------TCCCT-----TTGCCTTGGACCTCGCT----------GCT-------------------------
mojavensis -----CTGCT-----------GCTCCATGATAACTTGATTATGGGCAGCAGCGACTGCCG-----CTGGCTTGGACCCGGCT----------CCT-------------------------
grimshawi -----CTGCT-----------GC--------------------------------TCCCG-----CTGCTT----TCTTGCT----------TCTGCTTTTTGGCTCATCCTCGCAGTTG
Summary MMMMRRRRRRRRRRRRRRRRRRBBMMMMMMMMMRRRRRRRRRMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBMMMMMMMMMRRRRRRRRRMMMMMMMMMRRRRRRRRRMMMM
melanogaster -----C-----CG--------CTT------TGTCCC-GCCTCGTTATCGCCGCTCAGCACCGAG-------AGCACA-GCAGCG-------CATCCACTCT-------------------
simulans -----C-----GA--------CTTCTAAAGTATCGT-GTCTAGC--TTAACGCTCCTCTCCACA-------CGCACG-ATAGCA-------CGT--------------------------
sechellia -----C-----CG--------CTT------TGTCCC-GCCTCGTTATCGCCGCTCAGCACCGAG-------CGCACA-GCAGCG-------CATCCACTCT-------------------
yakuba -----C-----CGC-------CTT------TGTCCC-GCCTCGTTATCGCCGCTCAGCACCCAG-------CAGCCATACAGCC-------AAGCAGCACC-------------ACAGCG
erecta -----C-----CG--------CTT------TGTCCC-GCCTCGTTATCGCCGCTCAGCACCCAG-------CAGCCA-GCAGCC-------CAGCAG-----------------------
ananassae -----CGCAGACGT-------CTT------TGTTCCAGTCTCGTAATTGCCTCTCAGCACC-------------ACA-GCATCT-------CAGCATCCCA-------------------
pseudoobscura -----C-----CC--------TTT------TGTTCCGGCATCGTAATTGCC-TTCATCGTCGCATAATTGTCAGCCA-GCAGCAG------CAGAGACTCT-------------------
persimilis -----C-----CC--------TTT------TGTTCCGGCATCGTAATTGCC-TTCATCGTCGCATAATTGTCAGCCA-GCAGCAGCAGCACCAGAGACTCT-------------------
virilis -----T-----TTTTATGTACTAT------TGTTCCGGCATCGTAATTGCC-TTCATCGTCGCATAATTGTCAGCCA-GCAGCG--------AGCAGCAGC-------------------
mojavensis -----T-----TTTTATGTACCAT------TGTTCCGGCATCGTAATTGCC-TTCATCGTCGCATAATTGTCAGCCA-GCAGCAG------CAGCAGCAGCAGAAGCAGCAAAGGCAGC-
grimshawi TTTGCT-----TTTTATGTG-TAT------TGTTCCGGCATCGTAATTGCC-TTCATCGTCGCATAATTGTCAGTCA-GCAGCAA------CAGCAGCAGCACCAGCAG-----------
Summary MMMMMBRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBBBBRRRRRRRRRBBBBBBBBBMMMMMMMMMMMMMMMMMMMMMM
melanogaster ----------------------------------CAGCACCGCACGATTAGCACCGTTCCG-----------C-----------------------------------------------
simulans -----------------------------------------------------------CG-----------C-----------------------------------------------
sechellia ----------------------------------CAGCACCGCACGATTAGCACCGTTCCG-----------C-----------------------------------------------
yakuba CATCCACTCTGAGCAGCAG---------------CAGCACCGCACGATTAGCACCGCTCCG-----------G-----------------------------------------------
erecta ----------------------------------------CGCACGATTAGCACCGCTCCGGCAGTCAGGCTG-----------------------------------------------
ananassae --------------------------------------------------GCGTCTCTCTC-----------T-----------------------------------------------
pseudoobscura --------CTCAGCAGCAGCGACTCT----CTCAAAGCACCGCAAGATTAGCACC----CT-----------C-----------------------------------------------
persimilis --------CTCAGCAGCAGCGACTCT----CTCAAAGCACCGCAAGATTAGCACC----CT-----------C-----------------------------------------------
virilis ----------CGGCAGCGGCA---------GCGGCAGCACCACAACATTAGCACCATCGTT-----------CATTGCCGCCCGGCAGGCAGTGCGAGGCAACGGCAATAGCAGCAGCCA
mojavensis --------AAAGGCAGCGGCA---------GCGGCAGCACCACAACATTAGCACCATCGTT-----------CATTGCACCGCAGCAGGCAGTGCGAGGCAACGGCAATAGCAGCA-CTC
grimshawi ----------CAGCAGCAGCAGTCGTCCTGGCAGCAGCACCACAACATTAGCACCATCGTT-----------CATTGCACCGCGGCAGGCAGTGCGAAAGAGCGGCAATAGGCACA----
Summary MMMMMMMMMMMMMMMMMMMMMMMRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRMMMMMMMMMMMMMMMMMMRRRRRRRRRRR
melanogaster ------------TCAGGCTGTCCCGCTCG--CAC-CTGCCTGGGTCGCTGCGATTGGCCGC---------TCCCA---GCGACGGCGGCCA---------TTTGCCTGCA-GA----GCG
simulans ------------TCA-GCTGT--CGCTCG--CAC-TG--CTGGCGCGCTGCGATGG--CGC---------T-CCA---GCGACG-----------------CGGCATGCT-GC----AAG
sechellia ------------TCAGGCTGTCCCGCTCG--CAC-CTGCCTGGGCCGCTGCGATTGGCCGC---------TCCCA---GCGACGGCGGCCA---------TTTGCCTGCA-GA----GCG
yakuba ------------TCAGGCTGTCCCGCTCG--CAC-CTGCCTCGCTCGCTGCGATTGGCCGC---------TCCCT---GCGACGGCGGCCA---------TTTGCCTGCG-GA----GCG
erecta ------------TCAGGCTGTCCCGCTCG--CAC-CTGCCTCGGCCGCTGCGATTGGCCGC---------TCCCA---GCGACGGCGGCCA---------TTTGCCTGCG-GA----GCG
ananassae ------------GCCTGCCATCTCGCTCT--TGC-CGGCCGT--------CGATTGGCTGC---------CTGCC---GACACGGCAGCCATTGCTAAGGTCGGCCTGCA-GACCTCTCG
pseudoobscura ------------ATCTGCTGTCCCGCTCGAACGC-CTGGCT-GCCTGCTTTGATTGGCTGCAGTGCAGTGCCTGG---GCGACGGCGGCCA----------TTGCAGGCACGG----CCG
persimilis ------------ATCTGCTGTCCCGCTCGAACGC-CTGGCT-GCCTGCTTTGATTGGCTGCAGGGCAGTGCCTGG---GCGACGGCGGCCA----------TTGCAGGCACGG----GCG
virilis AATGCACAAC--TATCGCCGTCTCGCTTG--CGCCTGGCGCGTTGGGCTGCCATTGGCCGG---------GCGCT-TGCCTGCGGCAGCCA---------TTGCTATGCG-GG----C--
mojavensis TATGCACAACCGTAGTGCCGTCTCGCTCG--CGCACAGCACAAGCCACGCTCATTGGCTGT---------TGGCC-TGCCTGCGGCAGCCA---------TTGCTCTGCT-GC----CT-
grimshawi --CACACAAC--TATCGCCATCTCACTCG--CACACAGCGAAGCAAGCGTTGATTGGCTGC---------GCGAAGTGCCTGCGACGGCCA---------TTGCTCAGCG-GC----T--
Summary RRRRRRRMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMRRRRRRRRRBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBRRRRRRRRRBB
melanogaster CAGCGGTATAAAA-GGG-CG-CGGGGTGGCTGAGAGCAGCACACTCGAGCTGTGACCGCCGCACAGTCAACAACT----------------------AACTGCCTTCGTTA---------
simulans CGACGATAAAGCG-CGG-TG-CTGAGACACTCAGCGTGACGCCATCAA------------------------------------------------------------------------
sechellia CAGCGGTATAAAA-GGG-CG-CGGGGTGGCTGAGAGCAGCACACTCGAGCTGTGACCGCCGCACAGTCAAC--------------------------AACTGCCTTCGTTA---------
yakuba CAGGGGTATAAAA-GGG-CG-CGGGGTGGCTGAGAGCAGCACACTCGAGCTGTGACCGCCGCACAGTCAGC--------------------------AACTGCCTTCGTTA---------
erecta CAGCGGTATAAAA-GGG-CG-CGGGGTGGCTGAGAGCAGCACACTCGAGCTGTGACCGCCGCACAGTGAAC--------------------------AACTGCC-TCGTTA---------
ananassae CAGGTATAAAAGC-GGG-CG--GGGGTGGCTGGGAGAGGCACACTCGAACTGTGACCGCCGCACAGTCAACAC------------------------ATCCGCCTTTTCCAAAAGCAACT
pseudoobscura CAGAGGTATATAA-GGGCCG-CGGGGTGGCCGAGAGAGGCACATTCGAACTGTAACCGTCGCACAGTCCAGACACACTCGATCCGCTCCGAAAAGAGAACCGCAGTTTCCA---------
persimilis CAGAGGTATATAAGGGGTCG-CGGGGTGGCCGAGAGAGGCACATTCGAACTGTAACCGTCGCACAGTCCAGACACACTCGATCCGCTCCGAAAAGAGAACCGCAGTTTCCA---------
virilis ---TGGTATAAAA-GAG-AGCCGGGGTAGCTGAGAGCGACACACTTGAGCTGTAACCATCGCAGAGTCAAC--------------------------ATCGTCGCTTAACC---TTTAAA
mojavensis ---TGGTATAAAA-GAG-AGCCGGGGTAGCTGAGAGCGATACACTTGAGCTGTAACCATCGCAGAGTCAGC--------------------------ATCGTCGC---------------
grimshawi ---AGGTATAAAA-GCG-AGTCGGGGTAGCTGAGAGAGGCACACTTGAGCTGTAAGCATCGCAGAGTCAAC--------------------------ATCGT------------------
Summary BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRMMMMMMMMMBBBBBBBBBBRRRRRRRRRRRRRRR
melanogaster --ATA---TCCTCTGAATAAGCCAACTTTGAATCACA----------------------------A--GACGCAT----------ACCAAACATGCACGGATACCGAACCTAC
simulans -----------------------------------------------------------------------------------------------------------ACCCAC
sechellia --CTC---TCCTCTGAATAAG--------------------------------------------------------------------------------------------
yakuba ----G---TACTCCGAGAAAGCCGACTTTGAATCACA----------------------------A--GACGCAT----------TGCAAACATGCACGGATACCGCACCTAC
erecta ----C---TCAGCCGACAAA-CCGACTTTGAATCAGA----------------------------A--GACGCAT----------TCCAAACATGCACGGATACCGAACCTAC
ananassae CGAAC---TCTTCCGAACCGACGATCTCTGAATTTCC----------------------------GCCGCCACCG----------CCTAAAGATGCACGGATACCGAACCTAC
pseudoobscura ----G---TTCTTAGAGACAACCCATCAACATCCAAC----------------------------G--AACACAT------------TAGCCATGCACGGATACCGAACATAC
persimilis ----GTTCTTCTTAGAGACAACCCATCAACATCCAAA----------------------------G--AACACAT------------CAACCATGCACGGATACCGAACATAC
virilis CCGTT---TTAACCGTTAAGTTGGAGAGAGAGAGAGA------------GCAGAGTAATATATA-G--TATATAT----------AGCAAA-ATGCACGGATATCGCACCTAC
mojavensis ----T---TTAACCGTTAAGTCGGAGAGATAGTGACAACGCCCATACACACACACACATATATATA--TATATATCTATATATTGAACAAA-ATGCACGGATACCGCACCTAC
grimshawi ----T---TCCATCGAGAGTTTAAAGGGAAAGCAGCT----------------------------G-------------------ATCAAA-ATGCACGGATACCGCACATAC
Summary RRRMMMMMMMMMBBBBMMMMMMMMMBBBBBBMMMMMMMMMRRRRRRRRRRRRRRRRRRMMMMMMMMMBBBBBMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBB
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