Software Downloads

Download the source code for CSMET as an archive, here
Read the README file here for terms and conditions, and for instruction on how to use the program.

Dataset Downloads

The input data files required by CSMET for running on the real data set of Drosophila early developmental genes
(Papatsenko et al ), as well as the simulated data sets used to perform extensive experiments on CSMET can be downloaded
here. Also present in the archives are the output files of CSMET runs for each data point in the archive.

Real data set

Simulated data sets with varying annotation tree rates

Simulated data sets with varying annotation tree rates inside individual sequences

Simulated data sets with numbers of training instances

Simulated data sets with varying degree of contrast between background and motif

Simulated data sets using the modified PSPE outputs

README