crm
                 
   melanogaster  CCG-ATTCTGGCTGTCAAATCCCGACAAAAGTTGCTCAACTTTCTGCCGGCGT-------GTCCTCCCGACTTGCGCAA-TTTTTCCG----AGGATATTCGAGCACTTTAATTTCATG-
       simulans  CCG-AATCTGGCTGTCAAATCCCGACAAAAGTTGCTCAACTTTCTGCCGGCGT-------GTCCTCCCGACTTGCGCAA-TTTTTCCG----AAGATATTCGAGCACTTTAATTTCATG-
      sechellia  CCG-ATCCTGGCTGTCAAATCCCGACAAAAGTTGCTCAACTTTCTGCCGGCGT-------GTCCTCCCGACTTGCGCAA-TTTTTCCG----AAGATATTCGAGCACTTTAATTTCATG-
         yakuba  CCGAAATCTGGCTGTCAAATCCCGAGAAAAGTTGCTCAACTTTCTGCCGGCAT-------GTCCTACCGACTTGCGCAATTTTTTCCA----AAGATATTCGAGCACTTTAATTTCATGT
         erecta  CCG-AATCTGGCTGTCAAATCCCGACAAAAGTTGCTCAACTTTCTGCCGGCAT-------GTCCTCCCGACTTGCGCAA-TTTTTCCA----AAGATATTCGAGCACTTTAATTTCATG-
      ananassae  AAA-AAACTGTTTGTCAAA-CCCGACAAAAGTTGTTCAACTTTCTGCCTGCAG-----AAGTCCTACCGACTTGAGCAA-TTTTTTTG--TAAGGATATTTGAGCACTTTAATATTATG-
  pseudoobscura  ----A---CGGCTG---------AGCAAAAGTTGCTCAACTTTCTGCCGTCAT--------CCGTGCGTCCTTACGCAA-TTCGTCGGCTCCCAGATATTTGAGCACTTTAATTTCATG-
     persimilis  ----A---CGGCTG---------AGCAAAAGTTGCTCAACTTTCTGCCGTCAT--------CCGTGCGTCCTTACGCAA-TTCGTCGGCTCCCAGATATTTGAGCACTTTAATTTCATG-
        virilis  CTG-TGTCTGTTTGTCAAA-CCCGACAAAAGTTGCTCAACTTTCTGCCGTCATTTGCGTCGGGCTCCTACTTTACGCAA-TTTCGGG-----TCGACATTTGAGCACTTTAATTTCATG-
     mojavensis  CTG-TATCTGTTTGTCAAA-CCCGACAAAAGTTGCTCAACTTTGTGCCGTCATTTGCCTC-GGCTCCTACTTTACGCAA-TTTCGAG-----CCGACATTTGAGCACTTTAATTTCATG-
      grimshawi  CTG-TCGCTGTTTGTCAAA-CCCGACAAAAGTTGCTCAACTTTCT-----------------GCTCCTACTTTACGCAA-TTTTGGGT----TCGACATTTGAGCACTTTAATTTCATG-
        Summary  BBBBRRRRRRRRRBMMMMMMMMMMMMMMMMMMRRRRRRRRRBMMMMMMMMMBBBBBBBBBBBMMMMMMMMMBBBBMMMMMMMMMBBBBBBBBRRRRRRRRRRRRRRRRRRRRRRRRRRRB

                 
   melanogaster  TTT---GGGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
       simulans  TTT---GCGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
      sechellia  TTT---GGGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
         yakuba  TTT---GGGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
         erecta  TTT---GGGATTGTTCGCCTGATTTCTCAAGATCAGATTGCTTAT--------------CTG-----------------------------TGTCC----------C---CGTT------
      ananassae  TTT---GGGATTGTTCACATGATTTCTATAGATCAGATTGCTTATCGTCCCCTTGGATCCTG-----------------------------AGTCCTGTCTTCAGGC---CCTG------
  pseudoobscura  TTT---TGGATTGTTCACATGATTTCTCAAGATCAGATTGC-TAT--------------CTGCCTCGGTTCCTGC----CCCTTCCTCTC-TGTCT----------C---TGTC------
     persimilis  TTT---TGGATTGTTCACATGATTTCTCAAGATCAGATTGC-TAT--------------CTGCCTCGGTTCCTGC----CCCTGCCTCTC-TGTCT----------C---TGTC------
        virilis  TTTTCATGAATTGTTCAAATGATTTCTCAAGATCAGATTGCCTAT--------------CTG--------TCAGC----TACCATGTCCC-TGTTC----------CCAGCTCT------
     mojavensis  TTTTTATGAATTGTTCAAATGATTTCTCAAGATCAGATTGCTTAT--------------CTG--------TCAGCTACGTACCTTGTCCCTTATCC----------CCTACTCTGTCTCT
      grimshawi  TTTTCATTTATTGTTCAGCTGATTTCACAAGATCAGATTGCTTAT--------------CTT--------ACATT----TATCTTCGCCC-TATTT----------CCT-CGCT------
        Summary  MMMMMMMMMRRRRRRRRRRRRRRRRRRMMMMMMMMMRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------CCCCTGATTCAATTTG----------CCCGCCGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
       simulans  ------CCCCTGATTCAATTTG----------CCCTCTGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
      sechellia  ------CCCCTGATTCAATTTG----------CCCTCTGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
         yakuba  ------CCCCTGATTCAATTTG----------CCCGCCGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
         erecta  ------CCCCTGATTCAATTTGTCCGCCTGATCCCGCCGTGTAATTATTGCGCTTTTC--------CTAG-----------G------------CTGTTTGTCCT----C-TTTA-----
      ananassae  ------TTTCTGATTCAATTTG----------CTGGCCGTGTAATTATTGCGCTTTTA--------CTA------------G------------CTGCTTGTCCT----CTTTTT-----
  pseudoobscura  ------CCTCTGTCCC----TG----------TTCCTGATTCAATTATTGCGCTTTTT--------CTAGCTGTT------GTCGTCCCTGTTTCTGTTTCTCCTGATGC-CTCG-----
     persimilis  ------CCTCTGTCCC----TG----------TTCCTGATTCAATTATTGCGCTTTTT--------CTAGCTGTTGTCGTCGTCGTCCCTGTTTCTGTTTCTTCTGATGC-CTCG-----
        virilis  ------GCCCTGATTCAATTTG----------TGCACTGTGTAATTATTGCGCTTTTT--------GTA------------G------------TTGT-TGTACC----T-TTTATTTCT
     mojavensis  GCTTCAGCCCTGATTCAATTTA----------TGCACTGTGTAATTATTGCGCTTTTTCGTAGTTCGTA------------G------------TTGT-TGTACC----T-TTTG-----
      grimshawi  ------GCCCTGATTCAAT-------------------------TTATTGCGCTTTTTCT------GTA------------G------------CTATGTGTACC----T-TTTT-----
        Summary  BBBBRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBMMMMMMMMMBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------------------GGG--TCTAATAGTCCACTTCCTGCCTT----TCAAGCCT------CTTGGG------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--GCG
       simulans  --------------------GGG--TCTAATAGTCCACTTCCTGCCTT----CCAAGCCT------CTTGGG------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--GCG
      sechellia  --------------------GGG--TCTAATAGTCCACTTCCTGCCTT----CCAAGCCT------CTTGGG------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--GCG
         yakuba  --------------------GGG--TCTAATAGTCCACTTCCTGCCCT----TTGGGCCT------CTTGGG------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--GCG
         erecta  --------------------GGG--TCTAATAGTCCACTTCCTGCCCT----TTAGGCCT------CTTGGC------------GTTCCATTTGCACTTCAGTTTGACGTGATTT--TCG
      ananassae  --------------------GGG--TCTAATAGTTCACTTCCGGCCTC----CGGGG--T------TTTGGG------------GTTCCATTTGCACTTCAATTTGACGTGATTTCGCTG
  pseudoobscura  --------------------GGA--TCTAATAGTTCATTTCCTGCCTCGGGACTGGG-GT------C------------------TTCCATTTGCACTTCGTTTTGACGTGATTTC-GTG
     persimilis  --------------------GGG--TCTAATAGTTCATTTCCTGCCTCGGGACTGGGCCT------C------------------TTCCATTTGCACTTCGTTTTGACGTGATTTC-GTG
        virilis  ATATTATTTTATTTCTTTTTGGGACTCTAATAGTTTACTTCCTGGGTT----CCCTCCATGCTTGCACGCAA------------GCTTGGCTGCTCAGCCATTTGGATGTGATTT--CTG
     mojavensis  ---------AGATTTTGTTCGGGACTATAATAGTTTACTTCCTGGGTA----ACATCCTT------ACGAAA------CTAGC-ACTTGGTTGCTTAGCCATTTCGACGTGATCT--CTG
      grimshawi  --------------------AGACCTCTAATAGTTTACTTCCTGGGTT----CCATCCAG------CCAAAAAGGAGCTCAGCAGCTCGGCTCCTTGGCCATTTTGACGTGATTT--CTG
        Summary  BBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBRRRRRRRRRBMMMMMMMMMBBBRRRRRR

                 
   melanogaster  AGTCGCTTCCTGTGGATCT------CGTTCTC--GGGA------AAGGATATT--CGGAGCTATCT--CC---------TTTACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
       simulans  AGTCGCTTCCTGTGGATCT------CGTTCCC--GGGA------AAGGATATT--CGGGGCTATCT--CC---------TTCACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
      sechellia  AGTCGCTTCCTGTGGATCT------CGTTCCC--GCGA------AAGGATATT--CGGGGCTATCT--CC---------TTCACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
         yakuba  AGTCGCTTCCTGTGGATCT------CGTTCCC--GGGA------AAGGATATT--CGGAGTTATCTTCCC---------TTCACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
         erecta  AGTCGCTTCCTGTGGATCT------CGTCCCC--GAGA------AAGGATATT--CGAAGTTATCT--CC---------TTCACT---CC------CCTGTCTGTT-TGCACTTTTCAGT
      ananassae  AGTCGCTTCCTGTAGATCT------TGTTCTC--AGAACTCGACAAGGATATTCACGGACTTGTGT--CT---------CTGCCTTCCCC------TCTATCTGTTGTGCACT------T
  pseudoobscura  AGTCGCTTCCTGTGGATGT------CG---CC--GTGG------ATTGTCTCT--C---CTCCTCT--CCTGCGTGGCGTTCCCT---CC------CCTGTCTGTT-TGCACT------T
     persimilis  AGTCGCTTCCTGTGGATGT------CG---CC--GTGG------ATTGTCTCT--C---CTCCTCT--CCTGCGTGGCGTTCCCT---CC------CCTGTCTGTT-TGCACT------T
        virilis  AGTCGCTTCCTGTTGATGTTGCAGCCGCCTCG--CCTT------ATGAATCCT--TCAATCCTTTT--GT---------CTGACT---CTTGGAGACTTGTCTGTT-TGTACT-------
     mojavensis  AGTCGCTTCCTGTTGATGTGGCAGTCGGCTCGTTTCTC------ATG---CAC--TCAATCCTTTT--GT---------TTGGCT---TTTGGGGACTTGTCTGTT-TTTACT-------
      grimshawi  AGTCGCTTCCTGTTGATGT------CGCTTTG--GCTT------TTG---TCT--TC---CCTTTT--TT---------TTGGC-------GCGGACTTGTCTGTT-TGTCCT------C
        Summary  RRRRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRBBBBBRRRRR

                 
   melanogaster  TTGG-GTTTGACAGGCTTTTTGCTTTTACGAACTG------------GTGA--------ACTTTGCTGTCTCGCTCCGGCGGAAGTTGTCGTTAAAGGTTT-TCGTTTCCGCAGTTT-CT
       simulans  TTGG-ATTTGACAGGCTTTTTGCTTTTATGAACTG------------GTGA--------ACTTTGCTGTCTCGTTTCGGCGGAAGTTGTCGTCAAAGGTTT-TCGTTTCCGCAGTTT-CT
      sechellia  TTGG-ATTTGACAGGCTTTTTGCTCTTATGAACTG------------GTGA--------ACTTTGCTGCCTCGCTTCGGCGGAAGTTGTCGTCAAAGGTTT-TCGTTTCCGCAGTTT-CT
         yakuba  TTTGCGTTTGCCAGGCTTTTTGCTTTTATGAACTT------------TGCT--------GCTCTGCTGTCTTGCTCCGGCGGAAGTTGTCGTCAAAGGTTT-TCGTTTCCGCAGTTT-CT
         erecta  TTGG-GTTTGACAGGCTTTTTGCTTTTATGAACTT----------------------------TGCTGTCTCGCTCCGGCGGAAGTTGTCCACAAAGGTTT-TCGTTTCCGCAGTTT-CT
      ananassae  TTGG-TTTTGACATGCTTTTTGCTTTTATGAACTT----------------------------TGCTATCTCGCTCCAGCGGATGTTGTCTTCAAAGGATA-TCATTTCCGCCTTTTCCT
  pseudoobscura  TTGG-GTTTGATTCGCTTTTTGCTTTTATGAACTT----------------------------TGATGACTCGTTCCAGCGGAAGTTGTCCTCAAAGGATT-CCATTTCCGCAGTGC-CC
     persimilis  TTGG-GTTTGATTCGCTTTTTGCTTTTATGAACTT----------------------------TGATGACTCGTTCCAGCGGAAGTTGTCCTCAAAGGATT-CCATTTCCGCAGTGC-CC
        virilis  TTCG-GGTTGACATGCTTTTTGCTTTTATGAACTTTACTTTAACT--GCTG----AGCTGCATTGATTTCTCGTTTCAACGGAAGTTGCCCGAAACGGTTTCCCATTTCCGCACATT-GG
     mojavensis  TTCG-GGTTGACGTGCTTTTTGCTTTTATGAACTCTGCTTTGACTGAGCGG----AGTTGCATTGGTTTCTTGTTCGAGCGGAAGTTGCCTGAAACGTATTTTCATTTCCGCTGATT-TT
      grimshawi  TTTG-GATTGACATGGTTTTTGCTTTTATGAACTTTGCTGTATTT--GTTGTTGTAGTTGCATTAATTT--------AGCGGAAGTTGCTCGAAACGGTTTTTCATTTCCGCACATT-GG
        Summary  RRRRBBMMMMMMMMMRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBMMMMMMMMMRRRRRRRRRRRRRRRRRRMMMMMMMMMBBBBBB

                 
   melanogaster  GGGTGCA----------------TTTGCATATTATGAGCGC---CAA---------AAGACTTCTG----------ATTCTTTGTCTTCTTGGCGCC-AAAAGGGA--TAATTGATGGTT
       simulans  GGGTGCA----------------TTTGCATATAATGAGCGC---CAA---------AAGACTTGTG----------ATTCTTTGTCTTCTTGGCGCC-AAAAGGTA--TAATTGATGGTT
      sechellia  GGGTGCA----------------TTTGCATATTATGAGCGC---CAA---------AGGACTTCTG----------ATTCTTTGTCTTCTTGGCGCC-AAAAGGTA--TAATTGATGGAT
         yakuba  GGGTGCA----------------TTTGCATATTGTGAGCGC---CAA---------AGGACTTCTG----------ATTGTTTGTCTTCTTGGCGCC-AAAACGGA--TAATTGATGGTT
         erecta  GGGTGCA----------------TTTGCATATTATGAGCGC---CAA---------AAGACTACTG----------ATTCTTTGTCTTCTTGGCGCC-AAATCGGA--TAATTGATGGTT
      ananassae  GGGTGCA----------------TTTGCATATTTAGAGCGCGAAAAA---------AAAACTTTAG----------AAAATTTGTCTTCTTGCCGCCAAAAACAGA--TAATTGATGGTT
  pseudoobscura  GACTGCA----------------TTTGCATAAACCGAGCGC---CAAAATCTCGGTAAAATGTTTGCTTT------AATTCTACTTTTCTTGGCGCC-AAAAAAGA--TAATTGCTGGGC
     persimilis  GACTGCA----------------TTTGCATAAACCGAGCGC---CAAAATCTCGGTAAAATGTTTGCTTT------AATTCTCCTTTTCTTGGCGCC-AAAAAAGA--TAATTGCTGGGC
        virilis  ATGCGTA-TTTTTCTAAAATAAATTAACATAATATGGGCGC---CAA---------AA--------------------------------------------------------------
     mojavensis  ATGCATA---CTTAAAAAATAAATTTACATAATATAGGCGC---CAA---------AA----------TTATAAGAATTTTATGACAAAATGCTAGC-AAACTGCAGATAAC--------
      grimshawi  ATGCATAATTCACAAAAACTTAATTTACATACCATGAGCAC---CAA---------A---------------------------------------------------------------
        Summary  BBMMMMMMMMMBBBBBBRRRRRRRRRBMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBRRRRRRRRRBBBMMMMMMMMMBBBBBBBBBBBBBBBB

                 
   melanogaster  -----AC------------GCAATCGGGTTTGGTTAC-------AGTTTGGG-----------AAAGAGTTAAGCC----CGCCAAAAATG-TAGATTTATTTG--------AATA----
       simulans  -----TC------------TCAATCGGGTTTGGTTAC-------AGTTTGGG-----------AAAGAGTTAGGCC----CGCCAAAAATG-TAGATTTATTTG--------GATA----
      sechellia  -----TC------------TCAATCGGATTTGGTTAC-------AGTTTGGG-----------AAAGAGTTAGGCC----CGCCAAAAATG-TAGATTTATTTG--------GATA----
         yakuba  ----GTC------------TCAACTGGATTTGGTTAC-------AGTTTGGG-----------AAAGAGTTAAGCC----CGCCAAATATG-TAGATTTATTTGTAATTTCAAAGTGTTG
         erecta  ----GTC------------TCAAATGGATTTGGTTAC-------AGTTTGGG-----------AAAGACTTAAGCC----CGCCAAATATG-TAGATTTGCTTTTTCTTTCCAATT----
      ananassae  ----GTCATTTAAAGGTATTGAAATGTATTCGGTTAC-------ATTTTGGC-----------AAAGAGTTAAGCG----CGGTGCATATT-TGATTTTATTATTTTTTTAAAGGA----
  pseudoobscura  TGTCATC------------TTCGGAAGATTTGGTTACTTTTAATGGTTTGAGTTTGTCCCTTCCAAGTAGTACCCC----CGAAATCTTTT-TCGATTTCCATGTCAATGG-CATG----
     persimilis  TGTCATC------------TTGGGAAGATTTGGTTACTTTTAATGGTTTGAGTTTGTCCCTTCCAAGTAGTACCCC----CGAAATCTTTT-TCGATTTCCATGTCAATGG-CATG----
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------AAAATTAGGG-----------AGAAAATAAAGAGGAAAAGACACATATGATAAATGTATCAA--------AATA----
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -GTTATTCGCT----CTGAATTTTTATTC------TGATCCGAAATAAATC-TAATTCGTG---GATTTGCAAATCTTTAGAGATTAGTAATGT-GTCGAGACTAACGGCGGCCTTTAGG
       simulans  -ATAAATTGCT----CTGAATTTTTATTCATTGTGTGATCCAAAATATATC-TAATTCGTG---GATTTGCAAATCTTTGGAGATTAGTACTT------------GCGGCGGCCTTTAGA
      sechellia  -ATGAATTGCT----CTGAAATTTTATTCATTGTCTGATCCAAAATAAATC-TAATTCGTG---GATTTTGACATCTTCAGAGATTAGTACTGT-GTCGAGACTAGCGGCGGCCTTTAGA
         yakuba  TATTGATCGCC----CTGAAATGTTATA--------------ACAGAAATC-CTATTCAAG---GATTTGTAAATCTTTAGAGATTAGTATTTTAGTCTAGACT-CTGCTAGCTTTCAGG
         erecta  ----------T----CTGAAATGTTATAGAATGTCTGATTTTACATAAGTG-CGATTCGTG---GATTTGTAACTCTTTAGAGATTAGTATTGTGGTCTAGAC-----------------
      ananassae  -GTTGGGCACT-AGGCTTAAAGGTGAAGCA-----TGACT--------ATA-TGATACCTG---GAACCACTCACCAACGATATTTTTTATTATAATC----------------------
  pseudoobscura  -GATATCCGCT----CTGGGATATGCTTTGTGCT-AGATGGAAGATAGATC---------------------------------------------------------------------
     persimilis  -GATATCCGCT----C-GGGATATGCTTTGTGCT--------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  -TATAAACACAAAGACTGAACTAATAATC--TGTATCAATGTAAGCAAATCACATTTTCTGCCCTATTTTCTCATCTATGATCA--AATATTT---------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ACTTGAAGGGTTTGACAGTG-------GGTG-----TGGGACTTCTTAAAGATTAAGTCCAATTTCTGTGTCTTTAAACCTAAGCATTC----------TA------TATATTTTACATG
       simulans  ACTTGAAGGGTTTGACAGTGGGTGTATGGTGT---ATGGGACTTCATAAAGATTATGCCCAATTTTTATGTCATGAATCCTAAGCAGTT----------TA------CATATTTTGCATG
      sechellia  ACTTGAAGGGTTTGACAGTG-------GGTGT---ATGGGACTTCAAAAAGATTATGCCCAATTTCTATGTCATGAATCCTAAGCAATT----------TA------CATATTTTGCATG
         yakuba  GGTTGAGAGGTTTGACTG-----------------TGGGGACTTCATAAAGATTAGGCCCATATCCCAAGTTAGG------AAATATTCAATATGATCCTA------TATATTTTACATG
         erecta  --TTCAGAGGTTTGAATGCG-------GGTGT-GTTGGGGACTTCATGAAAATGAAGCCCAATTCCGAGGTAAAGCAAACTAAACCTTCAGTATGATCACATTCAAGTATATTTTACAAG
      ananassae  -----ATATGTTTTAAAATG-------GTAAT-TTAGTAAAATAATTAAAAAAAAATTTAATTTATCATTCGAAGCATACTAATTTTTC-------CAACA------CTTGTCTGAATAG
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  --CTAGAGGCTTACATAACG------CGTTATCGACCTGAAATTTGAAAAGCACATGTTTCTTATCCAA------------------------------TA------CATGATCTACATA
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  A------------------ACATTCC-------TACGCATTTGTGAGGACATGTGCACTGAAATGCAAAA-ATTTTTCTGCGACACCAGATA-GCGACGTGCCATAAAACTGAAGCAAAA
       simulans  A-------------------------------------ATTTGTGAGGACATGTGCACTGAACTGCAAT------------------AGATA-GCGACGTGTCATAAAACTGTAACAAAA
      sechellia  A-------------------------------------ATTTGTGAGGACATGTGCACTGAACTGCAATA----TTTCTGCGGCACCAGATA-GCGACGTGCCATAAAACTGAAACAAAA
         yakuba  C------------------ATATTCC-------TACGCATTTGTGAGGACATGTGTACTGAACTGCAATT----GTTCTGCTGCACCAGATA-GCGACAAGCCATAAAACTGAAACAAAA
         erecta  A------------------ATGTTCC-------TACGTATTTGTGAAAACATGTGTTCTGAACTGCAATA----TTTCTGCTGCACCAGATA-GCGACAAGCAATAAAACTGAAACAAAA
      ananassae  AAACCAGAAAATAGTGGTCACACTCC-------TACACATCTCAATAGATATGGGTA---AAATTCAACCAAAATTTTCGGTGCACCAGATA-GCGACAAGCCATAAAACTGGAACAAAA
  pseudoobscura  ---------------------------------TACACAT-TATACGAGTGTGTGCA--------CAAAA------TCTGTTCTACCAGATATGCAGTATGCCATAAAACGGGAACAAAA
     persimilis  ---------------------------------TACACAT-TATACGAGTGTGTGCA--------CAAAA------TCTGTTCTACCAGATATGCAGTATGCCATAAAACGGGAACAAAA
        virilis  ----------------------------------------------------------------------------------------------------GCCATAAACAAAATACAAAA
     mojavensis  A-------------------------GGTGGAATATGTAAATATACGAAACTACGTTCGGCACG------------------------------------GTCATAAACGAAATACAAAG
      grimshawi  ----------------------------------------------------------------------------------------------------GCCATAAACCGAACACAAAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBRRRRRRRRRBBBBBBMMMMMMMMMBBBBBRRRRRRRRRMMMMMMMMMBRR

                 
   melanogaster  CACTCATCTAATGACATTTCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--AAGCGCAGG-------GTCAGCGGTAGAATATCTCGGGAAATAACCAT-------G
       simulans  CACTCATCTAATGACATTCCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--AAGCGCAGG-------GTCAGCGGTAGAATATCTGGGGAAATAACCAT-------G
      sechellia  CACTCAACTAATGACATTCCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--AAGCGCAGG-------GTCAGCGGTAGAATATCTGGGGAAATAACCAT-------G
         yakuba  CACTCATCTAATGACATTTCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--AAGCGCAGG-------GTCAGAGCTAAAATACCTGGGGAAATAACCAT-------G
         erecta  CACTCATCTAATGACATTTCGGGTCTTTCCCATCAAAAGTCTGGCGCGATTCATAATGACCA--ATGCGCAGG-------GTCAGAGGTAAAATACCTGGGGAAATAACAAG-------G
      ananassae  CATTCACCTAATGATATTTCGGGTCTTTCCCACCAAAAGTCTGGCGCGATTCATAATGACCAAGAATTGAGGG-------ATCGCGGAGAGTATAGGACGGG------------------
  pseudoobscura  CACTCACCTAATGACATTTCGGGTCTTTCCCACCAAAAGTCTGGCGCGATTCATAATGAGGC--AAAGGTAAG-------G---GGAATGGAAAACTAGGGAACAGAAGCCG-------A
     persimilis  CACTCACCTAATGACATTTCGGGTCTTTCCCACCAAAAGTCTGGCGCGATTCATAATGAGGC--AAAGGTAAG-------G---GGAATGGAAAACTAGGGAACAGAAGCCG-------A
        virilis  CGTTCACCTAATGACATTTCGGGAGTTTCCCATCAAAAGTCTGGCGCGATTCATAATGATAGGCAATGGCAAG-GGTGCGGGTGCGGGTG--CGGCTGCGGGTGCGGCTGAT-------G
     mojavensis  AGTTCACCTAATGACATTTCGGGACTTTCCCATCAAAAGTCTGGCGCGATTCATAATGATGGGCGAGGGTAAG----------------------------------------------G
      grimshawi  CGTTCACCTAATGACATTTCGGGACTTTCCCATCAAAAGTCTGGCGCGATTCATAATGATGGTTAAGGGTGAGAGATATTGGTGAGGGTGGAAGGTGATGGGTAGGGATGATGGGTGAGG
        Summary  RRRRRRRMMMMMMMMMBRRRRRRRRRBMMMMMMMMMRRRRRRRRRRRRRRRRRRMMMMMMMMMBBBBMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBRRRRRRRR

                 
   melanogaster  GAA--ATAGGG------TCGGTCTTCCCT----CGAAGAGT----------------TTAC-------------TCAATGCTCAATGAAT--TCGGAGCGGCGGC---------GGCAAC
       simulans  GAA--ATAGGG------TCGGTCTTCCCT----CGAAGAGT----------------TTGC-------------TCAATGCTCAATGAAT--TCGGAGCGACGGC---------GGCAAC
      sechellia  GAA--ATAGGG------TCGGTCTTCCCT----CGAAGAGT----------------TTGC-------------TCAATGCTCAATGAAT--TCGGAGCGACGGC---------GGCAAC
         yakuba  GAA--ATAGGGTCGGTTTCGGTCTTCCCT----CGAAGAGT----------------TTGC-------------TCAATGCTCAATGAAT--TCGGAGCGACGGCGTCGGCGATGGCAAC
         erecta  GAA--ATAGGGTCGGTCTCGGTCTTCCCT----CAAAGAGT----------------TTGC-------------TCAATGCTCAATGAAT--TCGGACCGGCGGC---------GGCAAC
      ananassae  ------TAGGATCTCTCATCCTCATCCCT---------AGA----------------TTGC-----------------TGCTGAATGAAA--CGCATGCGTCGGC---------GGCAAC
  pseudoobscura  ACATCGTAGAG-------CACCCGTCCTCATAGCGACAGGCGGCAGGCGGCAGGTCATTGCGATCCTATCCGATCCGATCCTCAATGAATGCTGGAAGCGTCGGC---------GGCAAC
     persimilis  GCATCGTAGAG-------CAGCCGTCCTCATAGCGACAGGCGGCAGGCGGCAGGTCATTGCGATCCTATCCGATCCGATCCTCAATGAATGCTGGAAGCGTCGGC---------GGCAAC
        virilis  GAA---------------CAGC-----------CGGCGATG----------------GTTC-------------GCGCTGCTCAATGAAC------------GGT---------ATCAAC
     mojavensis  GAA---------------CAGC-----------CGGCAAAT----------------GTTC-------------TTGCTGCTCAATGAAC------------GGT---------GCCAAC
      grimshawi  GAA---------------CAGC-----------CGGTGATC----------------CTTT-----------CAACGCTGCTCAATGAAC------------GTT---------GCCAAC
        Summary  RBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRR

                 
   melanogaster  TTTT------GGGCCATAAAAGCGAAGAGCGGGATTTTTCCAC--CT-CCAGCATGCAAATGAAGTGAATTTCCCAGCTA----T--T----------TAACCC-TTTCATTTCGCTCGA
       simulans  TTTT------GGGCCATAAAAGCGAAGAGCGGGAATTTTCCAC--CT-CCAGCATGCAAATGAAGTGAATTTCCCAGCTA----T--T----------TAACCC-TTTCATTTCGCTCGA
      sechellia  TTTT------GGGCCAT-AAAGCGAAGAGCGGGAATTTTCCAC--CT-CCAGCATGCAAATTAAGTGAATTTCCCAGCTA----T--T----------TAACCC-TTTCATTTCGCTCGA
         yakuba  TTTT------GGGCCATAAAAGCGAGGAGCGGGAATTTTCCAC--CT-CCAGCATGCAAATGAAGTGAATTTCCCAGCTA----T--TTAACACTGTATAACCC-TTTCATTTCGCTCGA
         erecta  TTTT------GGGCCATAAAAGCGAAGAGCGGGAAATTTCCAC--CT-CCAGCATGCAAATGAAGTGAATTTCCCAGCTA----T--T----------TAACCC-TTTCAATTCGCTCGA
      ananassae  TTTT------GGGCCATAAAATCGAGCAA-GGGAATTTTCCAC--CTCCCGGCATGCAAATGAAGTGAATTTCCCAAACA----T--T----------TAACCCTTTTCCTTTCTTTCG-
  pseudoobscura  TTTTGGGCCCGGGCCGTAAAACCGAATCGCAA----------------ATGAAATGCAAATGAAGTGAATTTCCCAAATGTATCT--T----------TAACCC-TTTCACTTTGTTCAG
     persimilis  TTTTGGGCCCGGGCCGTAAAACCGAATCGCAA----------------ATGAAATGCAAATGAAGTGAATTTCCCAAATGTATCT--T----------TAACCC-TTTCACTTTGTTCAG
        virilis  TTTT------CGGCCATAAACATTAAAATACGAAATTTTCCGCTCTG-CGCCAAAGCAAATGAACAAAATTTCCCAAATG---CC--T----------TAACCC-TTTCGTTTCG-----
     mojavensis  TTTT------GGGCCATAAACAGTAAAACATGAAATTTTCCGCTCCA-AACCAAAGTAAATGAAGGAAATTTCCCAAATT---CT--C----------TAACCCTTTTTGGTTCT-----
      grimshawi  TTTT------TGGCCATAAAATACAAAA---AAAATGT--------A-TACATATTTAAATGAAGGAAATTTCCCAAAAT---GTTGC----------TAACCCTTTTCTGTTCG-----
        Summary  BBBBBBBBBBBRRRRRRRRRBMMMMMMMMMRRRRRRRRRBBBRRRRRRRRRBBBMMMMMMMMMBRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRBBBBBBBB

                 
   melanogaster  AC--------------------CTCGAATTGCCATTAGCCGTGTGGCGTC----------------------------------------------------------------------
       simulans  AC--------------------CTCGAATCGCCATTAGCCGTGTGGCGTC----------------------------------------------------------------------
      sechellia  AC--------------------CT----------------------CGTC----------------------------------------------------------------------
         yakuba  AC--------------------CTCGAATTGCCATTAGCCGTGTGGCGTC----------------------------------------------------------------------
         erecta  AC--------------------CTCGCATTGCCATTAGCTGTGTGGCGTC----------------------------------------------------------------------
      ananassae  ----------------------TCCGAAATACCATTACGTGGATGGCGTC----------------------------------------------------------------------
  pseudoobscura  CTCTGGTTTTCTTTTTGTTTCGCTCGAAGTGTCATTAGGTCCATGGCGTC----------------------------------------------------------------------
     persimilis  CTCTGGTTTTCTTTTTGTTTCGCTCGAAGTGTCATTAGGTCCATGGCGTC----------------------------------------------------------------------
        virilis  ----------------------GCCGAAGCGTAATTAGGACTGTGGCGTCGTCAGACGCCTAACAACAATGTCATACAATGGCATAACTGTAGTTACA----------------------
     mojavensis  ----------------------GCCGAACTGTCATTAGGTTTGTGGCGTCGTCAGACGCCTGACAACAATGTCATACA-----------------GTAGTGGCATGTATTCTTATATAGT
      grimshawi  ----------------------GCCGAAGTGTCATTAGGAATGTGGCGTCGTCAGACGCCTGACAACAATGTCATATA------------------TA----------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------------------------------------TTAACCCTT--TTCT--------CCGAGCCG--------------TCG--------------A-----------G-CAATTC
       simulans  --------------------------------------TTAACCCTT--TTCT--------CCTAGCCG--------------TCG--------------A-----------G-CAATTC
      sechellia  --------------------------------------TTAACCCTT--TTCT--------CCTAGCCG--------------TCG--------------A-----------G-CAATTC
         yakuba  --------------------------------------TTAACCCTT--TCTT--------CCGAGCCG--------------TCG--------------A-----------G-CAATTC
         erecta  --------------------------------------TTAACCCTT--TCTT--------CCAAGCCG--------------TCG--------------A-----------G-CAATTC
      ananassae  ----------------------------------------GACTGTA--TTTTATGACC-CCCGACCCGATCGCAGCCATGTCTCG--------------G-----------GCCAATTC
  pseudoobscura  ----------------------------------------GACTGTG--TTTTATGGCTACCCTAACCC--------------TTA--------------ACCCTTTCGATGG-CGATTC
     persimilis  ----------------------------------------GACTGTG--TTTTATGGTTACCCTAACCC--------------TTA--------------ACCCTTTCGATGG-CGATTC
        virilis  ----CCGAT----------------------------TTTGGTGCAC--GTTTATGAGT--CTTAACCC--------------TTTCGCTCACTATCAGCG-----------G-CGATTC
     mojavensis  GGCTGCGAT----------------------------TTTGATGCAT--GTTTATGAGT--GCTAACCC--------------TTTCGGCCACTATCAACT-----------G-TGATTC
      grimshawi  ----TGAATATATTATATACCCATATAGTAGCACCGATTTGTTGCTTTGTTTTATGAGC--TTTAACCC--------------TTTCGCT----------G-----------G-CGATTC
        Summary  BBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBRRRRRRRRRBRRRRRRRRRBBBBBBRRRRRRRRRBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRR

                 
   melanogaster  ATAAAAACG-------CAGCGAAAGTG----------CCATAAAAATCGAAGCCAACCCAAA--CGGTAGC-ACCT----------------GCATTCTTCGAAGACAAAAAGGTGCTAA
       simulans  ATAAAAACG-------CAGCGAAAGTG----------GCATAAAAATCGAAGCCAACCCAAA--CGGTAGCTACCT----------------GCATTCTTCGAAGACAAAAAGGTGCTAA
      sechellia  ATAAAAACG-------CAGCGAAAGTG----------GCAAAAAAATCGAAGCCAACCCAAA--CGGTAGCTACCT----------------GCATTCTTCGAAGAC-AAAAGGTGGTAA
         yakuba  ATAAAAACG-------CAGCGAAAGTG----------GCACAAAAAGCGAAGCCAACCCGTA--CAGTAGCTACCT----------------GCATTCTTCGAACACAAAAAGGTGCTAA
         erecta  ATAAAAACG-------CAGCGAAAGTG----------GCATAAAAATCGAAGCCAACCCGAA--CAGTAGCTACCT----------------GCATTCTTCGAAGACAAAAAGGTGCTAA
      ananassae  ATAAAAATG-------CAACGAAAGTG----------GCAAAAAAATCGAAGCCA--CCAAA--CGGTGGCTACCT----------------ACATTCTTCCAGGACAAAAAGGTGCTAA
  pseudoobscura  ATGAAAGCGAGTTGTCCAGCGAAAGTG----------GCATAAAAATCGAA--------AAG--AAACAGCTACCTG-GTGGCAG------GGCATTCTTCGAAGACAAAAAGGTGCTAA
     persimilis  ATGAAAGCGAGTTGTCCAGCGAAAGTG----------GCATAAAAATCGAA--------AAG--AAACAGCTACCTG-GTGGCAG------GGCATTCTTCGAAGACAAAAAGGTGCTAA
        virilis  ATAAAAATG-------CAGCGAAAGTG----------CCATAAAGATTGG---TAGCTCGAAACA-----CTACCTG-GTAGCCATTCTC-GGCATTCTTCGAAGACAAAAAGGTGCTAA
     mojavensis  ATAAAAATG-------CAACGAAAGTGCCAATGAGGACCATAAAACTTTG---CTGCCCAATGCAGCTCGCTACCTA-ACAGCCATTCTT-GGCATTCTTCGAAGACAAAAAGGTGCTAA
      grimshawi  ATAAAAATG-------CAGCGAAAGTGCCAATGAGCATCATAAAAATTGA--------------AATTCGTTACCTGCTTTTCTATTCTCTGGCATTCTTCGAAGACAAAAAGGTGCTAA
        Summary  RMMMMMMMMMBRRRRRRRRRMMMMMMMMMBBBBBBRRRRRRRRRBBMMMMMMMMMBBMMMMMMMMMBBBBBBBBBMMMMMMMMMBBBBBBRRRRRRRRRMMMMMMMMMBMMMMMMMMMBB

                 
   melanogaster  C---------------TCGTAATTAA-----------------------GACGA-ATAATCGCTACCT----------------------------------------------------
       simulans  C---------------TCGTCATTAA-----------------------GACGA-ATAATCGCTACCT----------------------------------------------------
      sechellia  C---------------TCGTCATTAA-----------------------GACGA-ATAATCGCTACCT----------------------------------------------------
         yakuba  C---------------TCGTCATTAA-----------------------GACGT-ATAATCGCTACCTAAACCG----AAGGCCCATA--------------------------------
         erecta  C---------------TCGTCATTAA-----------------------GACGA-ATAATCGCTACCTAAACCA----AAGCCCCATA--------------------------------
      ananassae  C---------------TAGGCTGTCT-----------------------AAC-A-ATAATCATTATCTCCTTTA----CCTGTATATG-------T------------------------
  pseudoobscura  CTAAAGTGCTCCGACATCATCATTAGCCGGAT--------------GACCACGC-ACGACCACGACCACGACGA----CGGCTACACA-------TA--GTAGCGGCAACACCTTCTCCC
     persimilis  CTACAGTGCTCCGACATCATCATTAGCCGGAT--------------GACCACGC-ACGACCACGACCACGACGA----CGGCTACACA-------TA--GTAGCGGCAACACCTTCTCCC
        virilis  CTACAGTTTTTAAACATCATCATTAGCCGCAGCCGACCTCTGGCCAGGCGACTATGGGTCGGCTGCCGTGCCTA-----GTCTATACC-------TGGCGCAGTCGTAACACCCGAGC--
     mojavensis  CTACAGTTTTTGTGAACCATCATTAGCCTTAG-----CTCTACCCAGGCGACGACGCGTCGGCTGCTGCGCCCGCTTGCGCCCCTACC------------------TACCACCCGCTC--
      grimshawi  CTACAATTTCTCAATATCAATATGATAATTAG-----CCTTAGACAGACTACG--GTGCCCGTTG-TGTGCCCC---TCTTCTCTACCTAAGACTTAAGGCAGTTGTGACACCCGCTC--
        Summary  BBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBMMMMMMMMMBBBBBMMMMMMMMMBMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBM

                 
   melanogaster  -AGATCCTTTCGCTTTT----CG--------------------------------------------TCCTCAAGGAACTTTGT---AAAAAAGTCGCA-----------AAAATTCTGG
       simulans  -AAGTCCTTTCGCTTTT----CG--------------------------------------------TCCTCAAGGAACTTTGT---AAAAAAGTCGCA-----------AAAATTCTGG
      sechellia  -AAATCCTTTCGCTTTT----CG--------------------------------------------TCCTCAAGGAACTTTGT---AAAAAAGTCGCA-----------AAAATTCGGG
         yakuba  AAAATCCTTTCGCTTTT----CG--------------------------------------------TCCTCAACGAACTTTGT---AAAAAAGTCGCA-----------AAAATTCGGG
         erecta  AAAATCCTTTCGCTTTT----CG--------------------------------------------TCCTCAAAGAACTTTGTTAAAAAAAAGTCGCA-----------AAAATTCTGG
      ananassae  ACAACCCTTTCGCTTTC----AG--------------------------------------------ACCTGCTCAAACTTTGC---TAAAAAGTCATATGCTTTCCTCCATTTTTCCAA
  pseudoobscura  AAAATCCTTTCGCTTTT----CGCAGCA-GCATG-----------TCCTGCAG-------------CCCTCCAATAAACTTTGC---TAAAAAGTCATA-----------GGATTCGGGG
     persimilis  AAAATCCTTTCGCTTTT----CGCAGCA-GCATG-----------TCCTGCAG-------------CCCTCCAATAAACTTTGC---TAAAAAGTCATA-----------GGATTCGGGG
        virilis  -AAACCCTTTCGCTTT-----CGCAAGGCGCAAGTCGGCCGCTCAACCTGCATTTCATTTTTTATTGTTTTGAAGGAATTTTGC---TAAAAAGTCATATGTTGAACGC--TTTTCCCCG
     mojavensis  --AACCCTTTCGCTTT-----CGCAAGGCGCAAG------GCTTAACCTGCA--------------GTCTTTAAGGAATTTTGC---TAAAAAGTCATATGCTGTATGC--TTTTCGCCG
      grimshawi  --AATCCTTTCGCTTTTCCTCCGCTGCCCGCAAA------------CCTGCAATTG----------AACCATAGAAATTTTTGC---TAAAAAGTCAGATGCTTTGCGCGATTTTCCCAG
        Summary  MMMMMMMMRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBMMMMMMMMMMMMMMMMMMBBBBBBBBBBBRRRRRRRRRBBBB

                 
   melanogaster  GAA-TTTTTTATTCA-----------CTTT--------------TATTCAT----------------CGGCGACCTTGAATGGCCGTTTTGATGGCGGTGGGTGG-----TTACCT----
       simulans  GAA-TTTTTTATTCA-----------CTTT--------------TATTCAT----------------GGGCGACCTTGAATGGCCGTTATGTTGTCGGTGGGTGG-----TTACCT----
      sechellia  GAA-TTTTTTATTCA-----------CTTT--------------TATTCAT----------------GGGCGACCTTGAATGGCCGTTATGTTGTCGGTGGGTGG-----TTACCT----
         yakuba  GAA-TTTTTTATTCA-----------CTTT--------------TATTCAT----------------CGGCGACCTTGAATGGCCGTTGGGTTGGCAGTGGGTGG-TTGCTTACCT----
         erecta  GAATTTTTTTATTCA-----------CTTT--------------TATTCAT----------------CGGCGACCTTGAATGGCCGTTGGGTAGGCAGTGGGTGG-----TTACCT----
      ananassae  GAACTTTTTTATTCATCATTTTTATTTTTT--------------TATTAGC----------------TAGCGACCTTGAATGGCCAGTGGGATGAAAGCGGGTTGCCTACCTATGT----
  pseudoobscura  CGA-ATTTTCATGGA----------ATTTT--------------TATTCATTTTTTAGGCTGCGGTACTGCGACCTTGAATGGTCGT--------CAGTGGGTCG-----GTACCT----
     persimilis  CGA-ATTTTCATAGA----------ATTTT--------------TATTCATTTTTTAGGCTGCGGTACTGCGACCTTGAATGGTCGT--------CAGTGGGTCG-----GTACCT----
        virilis  GAATTGGTTTATTCA-----------TTTT---------------------------------------TTGGCCTTCAAGT--------------------------------------
     mojavensis  GAATATCATTATTGA-----------CTATGCTTCTTCTTCTGTTTTCCA-----------------AGTTGACCTTCAATTGGCAT----------ATGACCAT-----ATGCGTCTTA
      grimshawi  AATCAGTTCTATTCA-----------CTTT--------------TTTCCA-----------------CTCTGACCTTGAATG-----------------GGGTGT-----GTACGTGTT-
        Summary  BBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGCTTAGGTAGGCG-----ATAGACTGAAATATTCCGACCTGCCG----GTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCC----------CGGATTAGCGACTGA-
       simulans  GGCTTAGGTATGCGA-TATATAGACTGCAATATTCCGACCTGCCG----GTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCC----------CGGATTAGCGACTGG-
      sechellia  GGCTTAGGTATGCGA-CATATAGACTGCAATATTCCGACCTGCCG----GTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCC----------CGGATTAGCGACTGG-
         yakuba  GGCATAGGTAGGCGA-TATATGGTCTGCAATATTCCGACCTGCCG----GTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCC----------CGGATTAGCGACTTG-
         erecta  GGCATAGGGACGCGA-TATATAGACTGCTATATTCGGACCTGCCG----CTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGTTAATCCCC----------CGGATTAGCGACTCG-
      ananassae  AGCTCAGGTATAAGC-TGTATA--------------GGCCTGCTG----CTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCGG----------GGGATTAGCAGATGG-
  pseudoobscura  GAGTGTTGTGCAGGACTGTGTAG------------------GTCT----CTGACTGCTGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCCG---------CGGATTAGCAGCTTG-
     persimilis  GAGTGTTGTGCAGGGCTGTGTAG------------------GTCT----CTGACTGATGTTTCAATTCTTGTGGTGGATTTAGCGCTAATCCCCG---------CGGATTAGCAGCTTG-
        virilis  AGGCTACCTACGTCCTTACCTGCA---------GCTCGGCTGCCTGAGTGCGACTGCTGTTTAAGGACTTGTGGTGGATTTATCGCTAATCCACTGGGATTAGCGGAATTAGCAACTCG-
     mojavensis  GGCCTACCTGAGTGTCGATCTGTA---------TCTTGGCTGCCTGCGCGCGACTGCTGTTTAAGGACTTGTGGTGGATTTAGCGGTAATCCGCGGGGATTAGCGGGATTAGCAGTTCG-
      grimshawi  GGTTTACCTGTGAATTTACCT-----------------GCTGCCTGC-------------TTAAAGTCTTGTGGTGGATTT-GCGCTAATCCACGGGGATTAGTGGTATTAGGCGCTCAC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBRRRRRRRRRMMMMMMMMMMMMMMMMMMBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBB

                 
   melanogaster  ACGGCGTTCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAAGGAAAGGGGAAA-----------TCACTACCA-----AACTCA------------
       simulans  CCGGCGTCCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAGGGAAAGGGGAAA-----------TCACTACCA-----AACTCA------------
      sechellia  CCGGCGTCCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAAGGAAAGGGGAAA-----------TCACTACCA-----AACTCA------------
         yakuba  CCGGCGTCCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAGCGAAAGGGGAAA-----------TCACCACAG-----CGCTCA------------
         erecta  CCGGCGTCCCGAG-------------TTCATTAAGCAAGGGAGCTGATAGTTGGTCTCAATGAAAGGAAAGGGGAAA-----------TTACTGCA------CACTCA------------
      ananassae  CCGGCGTTCCGAT-------------TTCATTAAGTACGGGAGCT-ATACGTAGACTGAATGAAAGGAAAAGGGGAA-------AATTTTACTACTATTTTTAACTGAACTGCTCCGACG
  pseudoobscura  CCGGCATTTCGCATATTTCGGCATTTTTCATTAAGTACGGGAGCT-GTACTTGGTCTCAATGAAA-GCGAGGGCAAA-------------------------------------------
     persimilis  CCTTCATTTCGCATATTTCAGCATTTTTCATTAAGTACGGGAGCT-GTACTTGGTCTCAATGAAA-GCGAGGGCAAACGGGGGAAAAATTACTATAT-----------------------
        virilis  CCGGGGTTGCGAT-----------ACTTCATTAAGTAATGGAGCT-GTACTTAACTTGAATGAATG-----------------------TACTGCTC----------------------G
     mojavensis  CCGGCGTTACAGA-----------ATTTCATTAAGTAATGGAGCG-CTACTTAACTTGAATGAAAG-----------------------TCGCGCTC----------------------G
      grimshawi  CCGGCGTTACGAT-----------CTTTCATTAAGTAATGGGGCT-GTACTTAACTTGAATGAAAG------------------------------------------------------
        Summary  BRRRRRRRRRBBBBBBBBBBBRRRRRRRRRMMMMMMMMMMMMMMMMMMBMMMMMMMMMMMMMMMMMMBBBBMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --AACTTCCTAAAGTCATATATTCCGTAACTACAACTTGATGAATGACAAATTGCTTTATTGCCACAA-----TCAAGAAATGTTATCTCTAAAATTC-CAAATTAATTAAATAGTAATT
       simulans  --AACTTCCTAAAGTCGTATATTCCGTAACTACAACTTGATGAATGACAAATTGCTTTATTGCCACAA-----TCAAGAAATGTTATCTCTAAAACCC-C-GATTAATTAAGAG------
      sechellia  --AACTTCCTAAAGTCGTATATTCCGTAACTACAACTTGATGAATGACAAATTGCTTTATTGCCACAA-----TCAAGAAATATTATCCCAAAAACCC-C-GATTAGTTAAAAACTGTTC
         yakuba  --AACTTCCTAAAGTCGTATATTCCTCAACTACGACTTGATGAATGACGAATTGCTTTATTGCCATAA-----------------------GAAAACT-C-GCTACATTCAGAAGCAG--
         erecta  --AACTTCCTAAAGTCGTATATTCCGTAACTACGACTTGATGAATGACAAATTGCTTTATTGCCACAA-----TCAAGACAGGTTGTATCTAAGAACC-C-GATAAATTCATAAGCTGTA
      ananassae  GCAACTTCCTAAAGTCATATATTCTGTA---------------------GATCGTTTTATTACAATAAAAATATGAAAATGTGTTTTTTATTAATA-----GATATATTTTAAACAAATT
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  GCGTTTTCCTG------------------------------------CAAATTTC-------CC-----------------------------------T-GGTAAGTTCA--------A
     mojavensis  GAGATTTCCTG------------------------------------CGAATTTC-------CCTTAG-----GTA--AATTCAATTGAA-------ATT-GG--AGCCCAGGA---ATA
      grimshawi  -----------------------------------------------CAAATTTTTGCACCACCTGAG-----TTAATAAATAATTTGCAAAAAAGTATT-TGTCATTTCTTAACGTGTT
        Summary  BBBBBBBMMMMMMMMMBMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TT--AAATGTATTGGCC---------------CTTGGA---------------------------AACTGTTTAAAGAAC--TATGCGAATT----GACTATTACCACATATTAGTTGTT
       simulans  ----AAGAGTATTGGCC---------------TTTGGA---------------------------AACTGTTTTCAAAAC--TATACGAATT----------------------ATTATT
      sechellia  TT--AAATAAATTGGGC----------------TTGGA---------------------------GACTGTTCCTAAAAC--TATA----------------------------GTTGTT
         yakuba  -----------------------------------------------------------------TACAGTTTCCAAAAC--TATACATA---------TACTAC--ATTATTGTTTGTG
         erecta  TT--GAATATTTTAGCA---------------ATACAAAGTTTAAACACTTGGCTTGCAGTAGCCTACAGTTTCCAAAAC--TATATACATT----AACTATTACGAATTATTGTTCGTT
      ananassae  TTTAAGAAGCATTAGAC--------AGACCTCTATAAA---------------------------GAAAATCTAAGCAAC--TT-----------------------------AATTATT
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  TT--GAAAT--TGGAGCTGAGGAATTTTTGTAATTATG---------------------------AATTATGTGGGAAAG--TTTGATAACGAGTA------------------------
     mojavensis  TT--TATAC----GATC--------------------G---------------------------AATTATATGGGAAAG--TTAGATAATGAGAAAAATAA-------TGGGAG-----
      grimshawi  TT--AAAAA----GATT-----------------TTTA---------------------------AATTACAACAGGAAGTTTTTGATTAAAATTTACTTAACATTTATTGATAGGC-TT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBB

                 
   melanogaster  ATGTTAAAA--GCAATGACTAAA-----------TTTTCGCTTAG--------TTGT------GAACATACTCA--------------TAC-----------AACGTGGGAAGATCG---
       simulans  ATACCATAC-GAGAATGACTAAA-----------TTTTCGCTTGG--------TTAT------GAACATACTCA--------------TAC-----------AACGTGGGAAGATCG---
      sechellia  AT---------AGCTTGGCAAAC-----------TTTTCGTTTGG--------TTAT------GAACATACTCG--------------TAC-----------AACGTGGGAAGATCA---
         yakuba  ATTGTA----------------------------------------------------------AACATTTTAAATATAAAACATGTTTAAC----------AACGTGGGAAGATCT---
         erecta  GTAGTAAGT--GCAATGACTAAA-------------TTCGTTTGG--------CTTG------GAACTTAATAAATATAAAAATTATTTAG-----------AACGTGGGAAGATCC---
      ananassae  TTGA-------AATATGAAAAAC----------CCTTTTATTTAAATAGATATTTTT------AAACTTACTAA------------CTTAGTCTGTGAAACGATCGTGGGAAGCTTT---
  pseudoobscura  -------------------------------------------------------------------------------------------------------ACGTGGGAAGCGGG---
     persimilis  -------------------------------------------------------------------------------------------------------ACGTGGGAAGCGGG---
        virilis  -----------CAGCTGT------------------------CAG--------TTAT---------------------------------------------------------------
     mojavensis  -TGGGAGTGGGCAGCTGG------------------------TAG--------CAAT---------------------------------------------------------------
      grimshawi  TTGGGAAAATAGGACTGGTTAATAAGGAGTGAAACTTTTA--TAG--------TTATTGACTG----------------------------------------ATGTGGGAAACTTTTGG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBB

                 
   melanogaster  --AACAGAT----------------GCAGC--------------CTCC-----------TCATCTGCA---TATTCACGAGTTCCCACAATTATA-------------------------
       simulans  --AACAGAT----------------GCAGC--------------CTCC-----------TCATCTGCA---TATTCACGAGTTCCCACAATTATA-------------------------
      sechellia  --AACAGAT----------------GCAGC--------------CTCC-----------TCGTCTGCA---TATTCACGAGTTCCCACAATTATA-------------------------
         yakuba  --AGCAGAT----------------GCAGC--------------CTCC-----------TCATCTGCA---TATTCATGAGTTCCCACAATTACA-------------------------
         erecta  --GACAGAT----------------GCAGC--------------CTCC-----------TCATCTGCA---TACTCATGAGTTCCCACAATTATA-------------------------
      ananassae  --ACCGAAT----------------ACCGA--------------TTCT-----------GCTTATAAA---TATTCATGAGTTCCCACAATTAAG-------------------------
  pseudoobscura  --GACAGAT----------------GCTGAGGCTGCGACTGCCGCTGC-----------CTCTTTGCA---TATTCATGAGTTCCCACAATTAAGT------------------------
     persimilis  --GACAGAT----------------GCTGAGGCTGCGACTGCCGCTGC-----------CTCTTTGCA---TATTCCTGAGTTCCCACAATTAAGT------------------------
        virilis  --GCTATGG----------------ACAGC--------------ATCAACTGAAGCGAAGATCATACA---TATTCATGAGTTCCCACGACAAACCC---------TAAACCAGTCA---
     mojavensis  --ATTAGAG----------------ACAGC--------------ATCAATTGAAGCGAAGGTCATGCA---TATTTCTGAGTTCCCACGATAAACCCTTAGTTAGTCAGCACAGTCACAT
      grimshawi  TAGCAAGAGCAGCTGACAGCTGCGTGCAGC--------------ATCAATTCAATCAAATAGTCTACAAATTATTCATGAGTTCCCACGATAAAGAACACGCTAGTTGCTTCAGTCACAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRBRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------ATTACTTC--AAACT---CAATGAACGG-----TCAAGGGAA--TGT----C-AAAAATTGATATGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
       simulans  --------ATTACTCC--AAACT---CGATGAGCGG-----TCAAGGGAA--TGT----C-AAAAATTGATATGTCTTCGTCATCTGGTTTAGTAGAGCATC------------------
      sechellia  --------ATTACTCC--AAACT---CGATGAGCGG-----TCAAGGGAA--TGT----CAAAAAATTGATATGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
         yakuba  --------ATTACGCCCTGAACT---CGATGAACGG-----TCAAGGGAA--TGC----C-AAAAATTGATATGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
         erecta  --------ATTACTCC--AAACT---CGTTGAACGG-----TCAAGGGAA--TGC----C-AAAAATTGATATGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
      ananassae  --------CCGACTCCCGGAACT-----------GG-----TCAAGCGAA--TATTGACC-AAAAAGTGAAACGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
  pseudoobscura  --CCTCCCGCCACTCT--GGACT---CTG-GACTGG-----TCAACAGAA--TGT----C-AAAAATTGATATGTCATCGTCATCTGGTTTACTAGAGCATCATCCCACAAGGCACATCA
     persimilis  --CCTCCCGCCACTCT--GGACT---CTG-GACTGG-----TCAACAGAA--TGT----C-AAAAATTGATATGTCATCGTCATCTGGTTTACTAGAGCATCATCCCACAAGGCACATCA
        virilis  ---------------C--AAATTGACCGATGGTCAG-----AGTATAGTACTTAC----T-AAAAATTGATATGTCATCGTCATCTGGTTTACTAGAGCATC------------------
     mojavensis  CAC-----ATCATT-C--AAATTGACCGATGGCCAG-----AGAACAGTA--TAC----T-AAAAATGAATATGTCATCGTCATCTGGTTTACTAGAGCATC------------------
      grimshawi  CACATCCGATCACT-C--CAACTGACCGATGGTTAGTTGAAACAAAAAAA--AAA----A-ACAAATTGAAGTGTCATCGTCATCTGGTTTAGTAGAGCATC------------------
        Summary  BBBBBBBBBBBBBBBBBMMMMMMMMMBBBBBBBBBBBBBBMMMMMMMMMBBBBBBBBBRRRRRRRRRMMMMMMMMMRRRRRRRRRRRRRRRRRRBMMMMMMMMMBBBBBBBBBBBBBBBB

                 
   melanogaster  -------------CT-CCCCCCATGG-------------A---AG------------------------TCCA---GCTAATGAT-------CG--G-----------------------
       simulans  -------------CT-CCCCCT-TGG-------------A---AG------------------------TCCG---GCTAATGAT-------CG--G-----------------------
      sechellia  -------------CT-CCTTCT-TGG-------------A---AG------------------------TCCG---GCTAATGAT-------CG--G-----------------------
         yakuba  -------------CT-CCCCTT-TGG-------------AGGGAG------------------------TGCG---GCTAATGAT-------CG--G-----------------------
         erecta  -------------CT-CCCCCT-TGG-------------A---AG------------------------TCCA---GCTAATGAT-------CG--G-----------------------
      ananassae  -------------CT-CCTCCC-GGG-------------A---AC------------------------TTTG---GCTAATGAT-------CTTCA-----------------------
  pseudoobscura  ATACGATCATCAACTCCCCCGC-TCG-------------A---CGGCACAGGGGCACCCTCTGCCC---TCCA---GCTAATGAT-------CA--G-----------------------
     persimilis  ATACGATCATCAACT-CCCCGC-TGG-------------A---CGGCACAGGGGCACCCTCTGCCC---TCCA---GCTAATGAT-------CA--G-----------------------
        virilis  -------------AT-AATCAA-CAGAAAGAGAGAGTGAG---AT---------CCCTCTCTGACCCACTCAACGGGCTAATGATCTGCGAGCT--GCATCGT-----------------
     mojavensis  -------------AT-AATCAA-CAG-------------T---AT---------TCAGCATTGTACCA-TCCATGAGCTAATGAT-------CT--GAATCGT-----------------
      grimshawi  -------------AT-AATCAA-CAC-------------G---GT------------GCTCGCTCCCTTGCCATAGGCTAATGAT-------CT--GCAACATTTTTGGAAAATACGGGA
        Summary  BBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------------------AATAGCAA--CACACGCAAGCGAATTCC-------CATGCAGCACACCTGAG-----------------------------------------------
       simulans  ---------------------AATAGCAG--CACACGCAAGCGAATTCC-------CATGCAGCGCACCTGAT-----------------------------------------------
      sechellia  ---------------------AATAGCAG--CACACGCAAGCGAATTCC-------CATGCAGCGCACCTGAG-----------------------------------------------
         yakuba  ---------------------AATAGCAG--CACACGCAAGCGAATTCC-------CATGCAGCACACCTGAG-----------------------------------------------
         erecta  ---------------------AATAGCAG--CACACGCAAGCGAATTCC-------CATGCAGCACACCTGAG-----------------------------------------------
      ananassae  ---------------------CATAGCAT--CGCACGCAAACGCATTCC-------CATGCAGTCCACCTGAG-----------------------------------------------
  pseudoobscura  ---------------------CATAGCAT--CACACGCAAGCGAATTCCCATGCAACATGCAACACACCTGAG-----------------------------------------------
     persimilis  ---------------------CATAGCAT--CACACGCAAGCGAATTCCCATGCAACATGCAACACACCTGAG-----------------------------------------------
        virilis  -TATGTAGGCAT---------CATAACAT--CACACGCAAACGCATTCC-------CATGCTGCACACCTGAGAAACCTAAGTTGACTGACTGACTGACGCTGGTGCTCGGTGGTGG---
     mojavensis  -TGCATCGG------------AATAACAT--CACACGCAAGCACATTCC-------CATGCTGCACACCTGAGAGACCAGAG---------AGACGGACA-----ACTCGCTGGTGGTGG
      grimshawi  ATATATAGGAATATATTTTGGAATAACATCACACACGCAAGCAAATTCC-------CATGCTGCACACCTGCGGGGGTGTGT---------AGGGTGGCA---------GCAGGGGG---
        Summary  BBBBBBBBBBBBBBBBBBRRRRRRRRRBBBMMMMMMMMMBRRRRRRRRRBBBBRRRRRRRRRMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----------------------------TTC---CAATT------------------------AA------------CCACC--------C------------------CCTCC------
       simulans  ----------------------------TTC---CAATT------------------------AA------------CCACC--------C------------------CCTAC------
      sechellia  ----------------------------TTC---CAATT------------------------AA------------CCACC--------C------------------CCTAC------
         yakuba  ----------------------------TTC---CAATT------------------------AA------------CCACC--------C------------------CCTCC------
         erecta  ----------------------------TTC---CAATT------------------------AA------------ACACC--------C------------------CCTAC------
      ananassae  ----------------------------TTC---CAATT------------------------AAGAGTGGGTGAAGCCACCCTCAAAAAC------------------CTTACAATTTT
  pseudoobscura  -----------------------GCCAAGTC---CGATTCCCGGTCAGTCCTACAGAGAGGCAAA------------CCACC--------C------------------CCAACAGCACC
     persimilis  -----------------------GCCAAGTC---CGATTCCCGGTCAGTCCTACAGAGAGGCAAA------------CCACC--------CCCAACAGCACCAACAGCACCAACAGCACC
        virilis  GTGGGTGTCCAGGACACATGCTCATCGCACC---CAATC----------TAGACACCAAGAGGAA------------CTACC--------C------------------TCAGC------
     mojavensis  GTGGGTGTCCACGACACATGCTCATCGCACC---CAATC----------TAAGCACCATCAACAA------------CTACC--------C------------------TCGGC------
      grimshawi  GAGGGTGT---------------GTTGAATCTAACAAGC----------AGACAACAAGCCAAAA------------CCACC--------C------------------TCAGC------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBMMMMMMMMMBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBB

                 
   melanogaster  ----------GATTCA-----------GCA-TCATC-------------C-----------AGGGGTTGACTAGTCCAATTAGAACCCCTGGACAT---------TG---------CAAC
       simulans  ----------GCGGCA-----------GCA-TCATC-------------C-----------AGGGGTTGATTAGTCCAATTAAAACCCCTGGACAT---------TG---------CAAC
      sechellia  ----------GGGGCA-----------GCA-TCATC-------------C-----------AGGGGTTGACTAGTCCAATTAGAACCCCTGGACAT---------TG---------CAAC
         yakuba  ----------TCAGCATCATCCAAAGGGCA-TCATC-------------C-----------AGGGGTTGACTAGTCCAATTAGAACCCCTGGCCAC---------TGCAACTCATTCAAC
         erecta  ----------AGGGCA-----------GCA-TCATC-------------C-----------AGGGGTTGACTAGTCCAATTAGAACCCCTGCCGAA---------GCCAG------CAAC
      ananassae  ATAAACA-AAGTGACA-----------GCA-TCATCATCGAAAAGCCGTC-----------GGGGGTTGATTAGTCCAATTAGAA----TGAGGAC---------TA---------CAAC
  pseudoobscura  AACAGCACCAACAGCA-----------GCA-TCATC-------------CTACTACAA-CAAGGGGTTG-CTATTCCAATTAGAGTCC-----------------TG---------CTAC
     persimilis  AACAGCACCAACAGCA-----------GCA-TCATC-------------CTACTACAA-CAAGGGGTTG-CTATTCCAATTAGAGTCC-----------------TG---------CTAC
        virilis  ------------ATCA-----------GCAGCCAGT-----------GGC-----CACTCGAGGGGTTG-CTATTCTAATTAGACCCTTTGCCCTT---------TT------------A
     mojavensis  ------------AACA-----------GCA-TCAGT-------------C-----CACTCGAGGGGTTG-CTATTCTAATTAGACCCTTTTCATTTTATTATTTGTT------------A
      grimshawi  ------------ATCA--------------------------------------------GAGGGGTTG-GCATTCTAATTAGACCCTTTTTGATG---------TT------------G
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CCC--TGG-------CGAC--TGTTGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTCT-ATCGT
       simulans  CCC--TGC-------CGAC--TGTTGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTCT-ATCAT
      sechellia  CCC--TGC-------CGAC--TGTTGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTCT-ATCGT
         yakuba  CCC--TGGACTCAGACGAC-----TGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTCT-ACCGT
         erecta  CCC--TGG-------CGAC-----TGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTCAAGTGTAT-ATCGT
      ananassae  CCC------------CGAG--ATGTGTTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGAAATACGAATCGAA-----ATATAATTGCGCCCTTCAAGTGTCT-ATCAT
  pseudoobscura  CCT--CG--------CGAT--AGCTGGTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTTAAGTGTCT-ATCAT
     persimilis  CCT--CG--------TGAT--AGCTGGTGATATCATGTC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATACGAATCGAA-----ATATAATTGCTCTTTTTAAGTGTCT-ATCAT
        virilis  TTT--TG--------TTGC--TGTTGCTGCTATCATCGC-AAGCATTTTATTGATCAAGTTACGCATCCGTAATATGAATCGAA---ATATATAATTGCTCTTTTTAAGTGTCTTGTCAT
     mojavensis  TTTGGTG--------TTGC--TGTTGTTGCTATCATCGC-AAGCGTTTTATTGATCAAGTTACGCATCCGTAATATGAATCGAA---ATATATAATTGCTCTTTTTAAATGTCTCGTCAT
      grimshawi  CTG--TG--------TTGCAGTGTTGCTGCTATCATCACTGGGCATTTTATTGATCACGTTACGCATCCGTAATATGAATCGAACATGTATATAATTGCTCACTTTAAGTGACT-GTCAT
        Summary  BBBBBBBBBBBBBBBBBBRRRRRRRRRMMMMMMMMMBMMMMMMMMMRRRRRRRRRRRRRRRRRRBRRRRRRRRRMMMMMMMMMBBRRRRRRRRRBRRRRRRRRRMMMMMMMMMBMMMMMM

                 
   melanogaster  ATATC-AA-ATGAA---TTGCATTTGCA-----TCTCCGCCC-------TTCTGCATTCGAGTCCGTTCGAGC--AGA---------------------------------GAGCTGTTC
       simulans  ATATC-AA-ATGAA---TTGCATTTGCA-----TCTCCGCCC-------TTCTGCATTCGAGTCCGTTCGAGC--AGA---------------------------------GAGCTGTTC
      sechellia  ATATC-AA-ATGAA---TTGCATTTGCA-----TCTCCGCCC-------TTCTGCAGTCGAGTCCGTTCGAGC--GGA---------------------------------GAGCTGTTC
         yakuba  ATATC-AA-ATGAA---TTGCATTTGCA-----TCTCCGCCCTTCCACATTCTACATTCGAGGCCGTTCGAGCTGAGA---------------------------------GAGCTGTTC
         erecta  ATATCAAA-ATGAA---TTGCATTTGCA-----TCTCCGCCC-------TTCTACAATCGAGTCCGTTCGAGC--AGA---------------------------------GAGCTGTTC
      ananassae  ATATC-AA-ATGAA---TTGCATTTGCA-----TCT---CCC-------TGCTGTGATGAATACGTTTCCATA--GTC---------------------------------GGACTGTTC
  pseudoobscura  ATATC-AACATGAATACTCGCACTCGCACTCGTACTCGTACT-------CCCAGCATTTG---CATTTCGAAC--ACATCACATCACCCTCTCTGAATGTGCCTCTGGGCTGATCTGTTC
     persimilis  ATATC-AACATGAATACTCGCACTCGC------ACTCGTACT-------CCCAGCATTTG---CATTTCGAAC--ACATCGCATCACCCTCTCTGAATGTGCCTCTGGGCTGATCTGTTC
        virilis  ATATC-AA-TGCGT---GCGCATTTGCA-----TTCA--------------------------------ACGC--TCA---------------------------------GG----TTC
     mojavensis  CTATC-AA-TGCGT---ACGCATTGGCA-----TTTG----C-------ATTTACATTTG--CGGACTCGAGC--TCG---------------------------------AG----TTC
      grimshawi  CTATC-AA-CTCAT---TTGCATTTGCA-----TTTA----C-------ATTTG---TCG--GCGTCTCTAGT--TCT---------------------------------GT----TTC
        Summary  MMMMMMMMMMMMRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRR

                 
   melanogaster  CCACGT----TCG------AG------------------GTCCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCG-TTGGTGCGTA
       simulans  CCACGT----TCG------AG------------------GTCCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCG-TTGGTGCGTA
      sechellia  CCACGT----TCG------GG------------------GTCCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCG-TTGGTGCGTA
         yakuba  CCACGT----TTG------AG------------------GTTCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCGTTTGGTGCGTA
         erecta  CCACGT----TCG------AG------------------GTCCTGG---------------------ATC--AGGATCAC-ATGGCCT---------------TAGGCG-TTGGTGCGTA
      ananassae  CCACGT----TTG------AGTGTGAGTTTTAGGAGGTCGTCGAGG---------------------ATC--AGGATCGT-ATGTCCT---------------TAGGCGTTTGGTGCGTA
  pseudoobscura  CCACGTATTCACG------GG------------------GTTGCGGAGTTGCGAGGTTGAGGACGGGATT--GGCCTCGT-CAGGCCT---------------TAGGCG-TTGGGTCTTA
     persimilis  CCACGTATTCACG------GG------------------GTTGCGG--------GGTTGAGGACGGGATT--GGCCTCGT-CAGGCCT---------------TAGGCG-TTGGGTCTTA
        virilis  CCACAG----CAGCGC---CG------------------GCGAGGG---------------------ATTG-ACAACCCC-TCGGCCAGGGATCGGGCCGCGCTAGGCGTTCGAGTTTTA
     mojavensis  TCACAG----CAGCAACAGCA------------------GCGAGGG---------------------ACTG-ACAACCCC-TCGGTCA------AGGCTGGGCTAGGCGTTCGAGTTTTA
      grimshawi  CCACAG----CAG------GA------------------GAGACGG---------------------ATTGAACGACCCCGTCG--CA--------------------GTTTGAGTTTAA
        Summary  BBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRMMMM

                 
   melanogaster  ATCGCACCAGACTTACAGGATCTTGCTTAACA-TT--ATTAAGTACTCGC--CCGATGCTGGGACCTC-----GCACAATGTC-------------------------T-
       simulans  ATCGCACCAGACTTACAGGATCTTGCTTAACA-TT--ATTAAGTACTCGC--CCGATGCTGGGACCTC-----GCACAATGTC-------------------------T-
      sechellia  ATCGCACCAGACTTACAGGATCTTGCTTAATA-TT--ATTAAGTACTCGC--CCGATGCTGGGACCTC-----GCACAATGTC-------------------------T-
         yakuba  ATCGCACCAGACTTACAGGATCTTGCTTAACA-TT--ATTAAGTACTCGC--CCGTTGCAAGGACCTC-----GCACAATGTC-------------------------C-
         erecta  ATCGCACCAGACTTACAGGATCTTGCTTAACA-TT--ATTAAGTACTCGT--CCGTTGCTGGGACCTC-----GTACAATGTC-------------------------T-
      ananassae  ATCGCACCAGACTTGCGGGATCTTGCTTAACATTT--ATTAAGTACTCTT--GGGATATTAAGTACTCTCAATGTGCAATGTC-------------------------TG
  pseudoobscura  ATCGCACCAGACTTGCGGGATCTTGCTTAACA-TTTCGTTAAGTACTCGA--ATG-------GCACTC-----GTGCAATGTT-------------------------C-
     persimilis  ATCGCACCAGACTTGCGGGATCTTGCTTAACA-TTTCGTTAAGTACTCGA--ATG-------GCACTC-----GTGCAATGTT-------------------------C-
        virilis  ATCGCACCAGACTTACGGGATCTTGCTTAACATTT--ATTAAGTACAATATGTTTTTCGCGTGAATTC------TATAATGCT-GGGCATTTGCTTCTGGCATTGATCC-
     mojavensis  ATCGCACCAGACTTACGGGATCTTGCTTAACA-TT--ATAAAGTACAATA--TTTTTCGCCCGAATTC------TATAATGCTAGAGCATTTGCCTTGGGCGTTGATCC-
      grimshawi  ATCGCACCAGACTTACGGGACCTTGCTTAACA-TT--ACTAAGTACAATA--TTTTTCGCATGAATTT------TGTAAATCT-------------------------C-
        Summary  MMMMMMMMMMMMMMBMMMMMMMMMMMMMMMMMMBRRRRRRRRRBMMMMMMMMMBBBBBBBBBBBBBBBBRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB


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