crm
                 
   melanogaster  CTGCAAAACCAGAAA---GGAGGCTCACATTCACTGGCAATATAGCAATCACAGGACATCG-GAGAGATGCGAAC---TGC----AGT-------CT----------CTTCTGTCAAACT
       simulans  CTCCAAAACCAGAAA---GGAGGCTAACACTCACTGGCAATATAGCAATCAGAGGACATCG-TAGAGATGCGAAC---TGC----AGT-------CT----------CTTCTGTCAAACT
      sechellia  CTCCAAAACCAGAAA---GGAGGCTAACACTCACTGGCAATATAGCAATCAGAGGACATCG-TAGAGATGCGAAC---TGC----AGT-------CT----------CTTCTGTCAAACT
         yakuba  CTCTAAAACCGGAAG---GGAGGCTTACATTGACTGGCAATATAGCAATCACAGGACATCG-GAGAGATGCGAGC---TGC----AGT-------AT----------CTTCCTTCAAACT
         erecta  CTCTAAAACCAGAAA---GGAGGCCCACACTCACTGGCAATATAGCAATCACATT-CATCG-GAGCGATGCGAAC---TGC----AGT-------CT----------CTTCTGTCAAACT
      ananassae  CTCTAAAACCAGAAACCCGCTGAAATACATCCACTGGCAATGGAA-AATCAAAGGACCTCG-GGGGGAAGAGGACTGTTGC----AGT-------CTGGCGGACTCGCGTCTGTCAAACT
  pseudoobscura  CTCTAAAACCAGAAA---CCAAGCTCATATCCGTTACCAATAGAGCAATCACAGAACAGTGCGAGGAGAGTGGGC---TGCTCGGGGTCCGATTCCT----------CTACTGTCAAACT
     persimilis  CTCTAAAACCAGAAA---CCAAGCTCATATCCGTTACCAATAGAGCAATCACAGAACAGTGCGAGGAGAGTGGGC---TGCTCGGGGTCCGATTCCT----------CTACTGTCAAACT
        virilis  TTTTAAA-----AAA---TTAATAATATATT--TTCCC--CAAGACA----------TGCT-TAGGGATTCAAA-----GC----AGT-------CT----------TGTCAGTCAAACT
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ---------------------------------CTCCCGGTAGGGCAGAAAGTGGGTTGCC-GTGGGTCATGAAT---CGC----AGT-------CG----------CCT--GTCAAACT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GAAAAACGCCATAAATTTTGT-----------------------------GGAACAATGGAATCTGCCA----GAGTAT------------------------------GCGGAT----G
       simulans  GAAAAACGCCATAAATTTTGT-----------------------------GGAACAATGGAATCTGCCA----GAGGAT------------------------------GCGGAT----G
      sechellia  GAAAAACGCCATAAATTTTGT-----------------------------GGAACAATGGAATCTGCCA----GAGGAT------------------------------GCGGAT----G
         yakuba  GAAAAACGCCATAAATTTTGT-----------------------------AGAACAATGGAATC---------------------TTCC-------------------AGTGGAT----G
         erecta  GAAAAACGCCATAAATTTTGT-----------------------------GGAACAATGGAATCTGCCA----GCGGAT-GCGGATGCC-------------------AGTGGAT----G
      ananassae  GAAAAACGCCATAAATTTCAA-----------------------------GGAACAATGGATGCTGGCA----GGACATGGGGGATGG---------------------GTTGCT----G
  pseudoobscura  GAAAAACGCCATAAATTTTGT-----------------------------CCAACAATGGAAGCTGTCGCAATGCACATGGGGGATGGG-------------ATACAGAGCGAATACGAG
     persimilis  GAAAAACGCCATAAATTTTGT-----------------------------CCAACAATGGAAGCTGTCGCAATGCACATGGGGGATGGGATACA-GAACAGAATACAGAGCGAATACGAG
        virilis  GAAAAACGCCATAAATTTTGGCCCGGCTGTCACCGAACGTGCGCTCTGCAGCAACAATAACAATGGGAG----AGGTAAAGCAAATGCCGAAGGCGAGCGGAGCTGAGCGTAGCT----T
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  GAAAAACGCCATAAATTCTGGCTCGGCTGTCACCGAACGTGCGCAATGCAACAACAATAGCAATGGCAG----AGGTAAGGCAAA-------------------CTATTGCAGTT----G
        Summary  BBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGGT-AAGG--------------------------------------------------------------------GTAGAATTCGCACAT-----------GCACACATATGTCAGGA
       simulans  GGGT-AAGG--------------------------------------------------------------------GTAGAATTCGCACAT-----------GCACACATATGTCAGGA
      sechellia  GGGT-AAGG--------------------------------------------------------------------GTAGAATTCGCACAT-----------GCACACATATGTCAGGA
         yakuba  GGGT-AAGG--------------------------------------------------------------------GTAGAATTCGCACAT-----------GCACACATATGTCAGGA
         erecta  GGGT-AAGG--------------------------------------------------------------------GTAGCATTCGCACAT-----------GCACACATATGTCAGGA
      ananassae  GGGC-AGGG--------------------------------------------------------------------GTAGAATTGGCACATGCAC--AAACGGCACACATATGCCAGG-
  pseudoobscura  TGGTGGGGG--------------------------------------------------------------------GTTCTATTCGCACATGCACCAAAACTGCACACATATGTCAGGA
     persimilis  TGGT-GGGG--------------------------------------------------------------------GTTCTATTCGCACATGCACCAAAACTGCACACATATGTCAGGA
        virilis  GGGC-AGGG------------------------------------------GCATGGGCAG-GGGCCGGGGGTAGCCGCACAATTCGCACATGCAC--AAACTGCACACATATGCCAGTC
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  GGGC-AGGGAGAGAGGAACAGCGAACAGGGTACAGTGAACAGGGACTGGCAACAGAGGCAGAAGGCAGGAGGCAGCCGCACAATTCGCACATGCAC--AAACTGCACACATATGGCAGAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---GTAT---------CGATAT----GT------------TAGGGGT--GTTCAA--------------------CGGGGGTGG------CTAAT-------AAAATTTA----------
       simulans  ---GTAT---------CGATAT----GT------------TAGGGGT--GTTCAA--------------------CGGGGGTGG------CAAAT-------AAAATTTA----------
      sechellia  ---GTAT---------CGATAT----GT------------TAGGGGT--GTTAAA--------------------CGGGGGTGG------CTAAT-------AAAATTTA----------
         yakuba  ---GAAT---------CGATAT----GT------------TAGGGGT--GTTCAA--------------------CGGGGGTGG------CTGAT-------AAAAATTA----------
         erecta  ---CTAT---------CGATAT----GT------------TAGGGGT--GTTCAA--------------------CGGGGGTGG------CTGAT-------AAAATTTA----------
      ananassae  ---CTAT---------CGATATGCGAGC------------TAGGGGTGAGCTGAA--------------------CGGGGGTGG------CTGATGCCAAAGAAGCATTT----------
  pseudoobscura  ---CTACTACTATCGGCGATAT----ATCCAGTCCCGTCCTAGGGGTT-GGAGAA--------------------CGGGGGTGG------CTGCC-------------------------
     persimilis  ---CTACTACTATCGGCGATAT----ATCCAGTCCCGTCCTAGGGGTT-GGAGAA--------------------CGGGGGTGG------CTGCC-------------------------
        virilis  ----AAT---------TTATAG----AT---ATCGGTTGATAAGGGT--GCGGAGGGTGGGCCTTAGATCAGAGTCGGGGGTGG------CTGTA-------GCTGCCCCGGCCACTGCC
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  CCAGAAT---------CTATAG----AC---ATCAGTCGATAAGGGT--GCAGAGGGTGGACTTTAGATCAATGTCGGGGGTGGTGGCTTCTGCT-------GATGCTGAGGCTGAGGCT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------------TCCAGGCCGCGTAAGCCGATCAG-AAAGTCATGTAAACAC-AAAAGTGGCTGA----------GAGATGATTG-----------------------TTTTTTACCA
       simulans  --------------TCGAGGCCGCGTAAGCCGATCAG-AAAGTCATGTAAACAC-AAAAGTGGCTGC----------GAAGTGATTG----------------------TTTTTTTACCA
      sechellia  --------------TCGAGGCCGCGTAAGCCGATCAG-AATGTCATGTAAACAC-AAAAGTGGCTGC----------GAAGTGATTG----------------------TTTTTTTACCA
         yakuba  --------------TCCAGGCCGCGTAAGCCGATCAG-AAAGTCATGTAATCACCAAAAGTGGCTCA----------GAAGTCATTG-----------------------TTTTTTAGCA
         erecta  --------------TCCAGGCCGCGTAAGCCGATCAG-AAAGTCATGTAAACACAAAAAGTGGCTTA----------GAAGTGATTG-----------------------TTTTTTAGCA
      ananassae  --------------TCCA-GCCGCGTAAGCCGATCAG-AAAGTCGTGTAAACACAAAAAGTGGGCGA--------GCGGGACGATTG----------------------CTTTTTTAGCA
  pseudoobscura  ------------------TGCCACGTAAGCCGATCAG-AAAGTCGTGTAAACACAAAAAGTAGGCGA----------GAATTGCTTGCTGGATATCTATGGGTTATTGTTTTTTTTAGCA
     persimilis  ------------------TGCCACGTAAGCCGATCAG-AAAGTCGTGTAAACACAAAAAGTAGGCGA----------GAATCGCTTGCTG--TATCTATGGGTTATTGTTTTTTTTAGCA
        virilis  TGTGCTGGTTGCA-CTGTTGCTGGCTAAGCGGATAAC-AAAGTCGTGTAAA--------------------------------CTCG----------------------CCTTTTGGCCA
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  GCTGCCATCTCCATTTGCTGCTGGGTAAGCGGATAACGAAAGTCGTGTAAACAC-AAAGTTGGCCATTTGGCTGTTAAGTTCGCTCG----------------------CCTTTTGGCCA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GTCAATTTAGCTGAGCTGATTTCA-----GGTTA--TACGCGAACCTAAGATGGAAGTAGATTTTTAGATTACCAGAAATAACCTTCAGTTTCTAAAAGAATGAGAAATAGTAAATCGTG
       simulans  GTCAATTTAGCTGAGTTAAACCTGAAATCGGTTC--TACGCAAATCTAAGATGGGAGTAGAATTGTAGATTACCAGAAATAACCTTCAGTTTCTAAAAGAATGACGAATAGTATATCGTA
      sechellia  GTCAATTTAGCTGAGTTAAACCTGAAATCGGTTC--TACGCAAATATAAGATGGGAGTAGAATTGTAGATTACCAGAAATAATA----------------------------ATATCGTA
         yakuba  GTCAATTATGCTGTGCT------G-----GGTTC--TAAGCAAATTTGATATAGGAATAGATGATTCGAGAACAAGAAAATACCATC-ACTTTTAAAAGAATA-----------------
         erecta  GTCAATTTAGCTGAGCTGATTTCG-----GGCTC--TACGCAACTCTGAGATAGAAATAGATGTCTAGATTACAAGAAAACAGCTTCTGTTTCTAAGGAAATGAAAAATATGAAATCGTG
      ananassae  GTCAATTTAGCTGAGCGGCTTTCG-----GGTGC--TGGGCAAACAGAAG----------------------------------------------------------------------
  pseudoobscura  GTCAATTTAGTTGAGCGGCTTTTG-----GGT----------------------------------------------------------------------------------------
     persimilis  GTCAATTTAGTTGAGCGGCTTTTG-----GGT----------------------------------------------------------------------------------------
        virilis  GTCAATTTAGCAGAGCGGCTTACG-----GGTCA--------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  GTCAATTTACTTGAGCGGCTTACG-----GGTCAGCTATGCAAA----------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAGCCTGTGGCAT-TCTTACCCCTTACTGAAATGAATGTAACAGGTAGAAGGCAGCAATTGCAGTGCTACAAAGTATATATATTCTTGA-------------------------------
       simulans  AAGTCTGTGGTAT-TTTTACCCGTTAATGAAATGAATGTAACAGGTA-CAGAAAACGATTCCTACGCTACAAAGTATATATATTCTTGA-------------------------------
      sechellia  AAACCTGTGGTAT-TTTTACCCCTTACT--------------------------------------------------------------------------------------------
         yakuba  ------------------------------------------------------------------------------------------------------------------------
         erecta  AAATCCATGGTATATATTAGGCGTTACTGAAATGAATGTAACAGGTAGTAGGAGGCGTTTCCAACGGTATAAACTATATTTATTCTTCATCAGGAGCGCTAGGGTCCGTCTTTTTATGTC
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----------TCCATATAAGTAT------------AAGTATAAGAGCTATAATGTTATAATTAAACATGAAG--ATCCT----------ACGCTGTGCAAGTTTTGTGCCACAAATTTAA
       simulans  ----------TCC------------------------GTATAAGAGATATAATGTTGAAATTAAGCTTGCTGCTATGCT----------GTGCTGTGCAAGTTTTGTGCCACACTCTCAC
      sechellia  --------------------------------------------------------------------------------------------------------------ACACTTTAAG
         yakuba  ------------------------------------------------------------------------------------------------------------------------
         erecta  CGTCTGTCTGTCCGTATAAGCGCTGTGATCTCAGGAACTATAAAAGCTAAGGAGTTGAGATAAAGCATGCAG--ATCCTATTGATGCCAACGCTGTGCGAGTTTTTTGCCCCAGTCGAAC
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  -----------------------------------------------------------------------------------------------------------------------A
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBRRRRRRRRRRMMMMMMMMMMRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBB

                 
   melanogaster  CTCAAGATTACCAC-----TCACAAA-----GGATACATT----------------ACCATTTGGCCATTAAA---AATTA-----CAGCATCC----ATAGA----CAACCTACTT---
       simulans  GACCGCCTAACCATCTCGCCCACACATTTATAAATGTTTC--GATATATTATTTGTATCATATCGCCATTAAA---AATTA-----TAGCTTCC----CTAGTAAGAAAACGTACTT---
      sechellia  TAATTGATAACTAG---------ACA-----AGATTTTTC------TTTCTTTTGTACTTTAT---AATTAAG---A--TA-----CCACTT---------------GGTCTCATTT---
         yakuba  -------------------------------------------------------------------TTTAAA---AATTA-----TAGCTTCT----CTACTTCGACAAGCTACTTCCG
         erecta  GCCCAAAAAAACAG----TTTACAAA-----ATGTGTTTTCTAAAAAAATATTTAAAA---------ATTAAATATAATTAATAATTAATTTTTAATATTATATCGACAGGCTACTTCCG
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  CCCTTGCCTACAGC----TCAGCACA-----AGGCGGCTC----------------ATCAGGCGGCCATTGAA---CGTTG-----CGCTTGCA-------------------CCTT---
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  RRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -----------AAAATTTATA-AAAACTTGAGGGTTATATCACAGAGTTACCGAAAAAAAGCGTAAAAGCTTTATATTCTCAACAATATTA-----------------------------
       simulans  -----------AAAATCTATA-AAAACGTGAGGGTTATATCATAAAACTACCGAAAAAAATCATACAAGTTTTATATTCTTAACAATGTTA-----------------------------
      sechellia  --------------ATCTTTATCACACATTA-GGTTATGTT-------------CAGATGTTTTGCTATTTTTTTTTATT------TGTTC-----------------------------
         yakuba  AAATACGATTTAAAAGTTATA-AAGATAGGGGGGCTATATCCACCAGCTACCATGAAAAATTGTACAAGTTTTATATTCATAATCATGTTATAATAGGGTTTACGAAAACTTCGGTCTGC
         erecta  AACTACGATTTAAAATTTATG-AAAACAATAGAGTTTTATCATACAGCTACCATAGAATATAGTACAAGTTTTATATTCATAACAATGTTATAATAAGGTTTACTTAAACTTCGGTCTG-
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  -----------AAAATTGCCA-AAAACATTAAAAAAATACTAAAATATAAACAAAAAAATGCGTGA------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRR

                 
   melanogaster  --------------------------TGCTATTAAAATATTGCTGGTTTTCTGCTGTTATAGAATCATTTTTAAAAGTATAACGTAAAAAAT-----------------AAAATAAAACT
       simulans  --------------------------TGCTTTTAAAATG---------TTTTGCTATTATAGAATCATTTTTAAAAGTATAACTCGAAAAAT-----------------AAAATAAAATT
      sechellia  --------------------------TGGTT-----------------TTTTGCTATTATTGAATCATTTTTAAAAGTATAACTCGAAAAAT-----------------AAAATAAAACT
         yakuba  CAATCCAAAGATGGACTCCGTTCTTCTACTTTTAAAATGTTGCTGTTTTTTGGCTATTATA-AACTGTTTTTGAAAATATAACGTTAAAAATTATTTGATCAATGTATCAAAGTAAAA-T
         erecta  ----CAAAAGATGGTTTTAATACTAGTACTTTTAAAATGTTGCTGGTTTTTTGCTATTACG---------TCGATAGATCAGAGTTTAAAGTAA---------------AAAATAAAA-G
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGTATTCAT---------TTGAAAA--ATC-----AGCGGGCATATAATTTATATCATATTTTTAAAATTTAGGCAAAGGATGTTTGCATAAAGTTTTTACTGTTTACTAGTCATTTTGG
       simulans  AGTATTAAT---------TTGAAAA--ATC-----AGCGGGCATATAATTTATATAGTATTTTTTAAATTTAGGCAAAGGATGTTTGC-------TGTTACTGTTAACTAGTCAGTTTGG
      sechellia  AGTATTAAT---------TTGAAAA--ATC-----GGCGGGCATATAATTTATATAATATTTTTTAAATTTAGGCAAAGGATGTTTGC-------TGTTACTGTTAACTAGTCAGTTTGG
         yakuba  AATATAAGTTAAGTTAAGTTATAAATGATCAGATCAGCTGGCTTTTAAATTACAATACATTTTTT---TTT---AAATTGGTGTTGGCTTAAAGTCTTGATTGTTTACTAGTCATTTGGG
         erecta  AACATTCGTAGAGT----TTAAAAATGATCGG---AGCGAGCTTTTAAATTGC---------------------CAAAGGAAGTTGGCATAACGTTTTTACAGTTTACTAGTCATGTTGG
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  -----------------------------------------------------------------------------------------------------------CCAGTCAATTTGG
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAGTGCGTTTGTTGGTTTTTAGGCAAATA---------------CCGGGCACAG-GAGTGAGTTTGGGAAT-----CGGGAGTTGC-GCACTTGCTT-GGCCACG------------AGG
       simulans  AAGTGCGTTTGTTGGTTTTTAGGCAAATA---------------ACGGGCACAG-GAGTGAGTTTGGGAAT-----CGGGAGTTGC-GCACTTGCTT-GGCCACG------------AGG
      sechellia  AAGTGCGTTTGTTGGTTTTTAGGCAAATA---------------ACGGGCACAG-GAGTGAGTTTGGGAAT-----CGGGAGTTGC-GCACTTGCTT-GCCCACG------------AGG
         yakuba  AAGTGCGTCTGTTGGTTTTTAGGCAAATA---------------CCGGGCACAG-GAGTGAGTTTGGAAAC-----CGGGAGTTGC-GCACTTGCTT-GGCCACG------------AGG
         erecta  AAGTGCGCCTCCTGGTTTTTAGGCAAATA---------------CCAGGCACGG-GAGTGAGTTTGGGACT-----CGGGAGTTGC-GCACTTGCTT-GGCCACG------------AGG
      ananassae  --------------------------------------------CCGGGAGGAGTGAGTGAGCTGAGGAGCGGGAGCGGGAGTTGC-GCACTTGC-T-GGCCACG------------AGG
  pseudoobscura  ------------------CTATGCAAATACAAGTGCTTCAAAATGGGAGGAGAG-GAGTGCGATGCGGAGG--GAGAGGCAGTTCCGGCACTTGCTT-GGCCACG------------AGA
     persimilis  ------------------CTATGCAAATACAAGTGCTTCAAAATGGGAGGAGAG-GAGTGCGATGCGGAGG--GAGAGGCAGTTCCGGCACTTGCTT-GGCCACG------------AGA
        virilis  ------------------CTATGCAAATA------------------TGCGCAA-GAG--TCCTCGAGG------------------GCACTTGCCCAGGCCGCAAGGAAACCCTCGCGA
     mojavensis  CTGAGCGGCTTACGGGTCCTATGCAAATA------------------TGCGCAA-GAGTCTCTTTCGGG------------------GCACTTGCCCAGGCCGCAGGAAAACCCTCGCGA
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GCAAACAAAAAGCGCAAACACGCGACCC---------TCGGC-------CACGCGTATTCCTGATCC-----------------------CAGGGATCGGACGTAATGTTATCCTTT---
       simulans  GCAAACAAAAAGCGCAAACACGCGACCC---------TCGGC-------CACGCGTAGTCCTGGTCC-----------------------CAGGGATCGGACGTAATGTTATCCTTT---
      sechellia  GCAAACAAAAAGCGCAAACACGCGACCC---------TCGGC-------CACGCGTAGTCCTGGTCC-----------------------CAGGGATCGGACGTAATGTTATCCTTT---
         yakuba  GCAAACAAAAAGCGCAAACACGCGACCC---------TCGGC-------CACGCGTAGTCCTGGTCC-----------------------CA-GGATCGGACGTAATGTTATCCTTT---
         erecta  GCAAACAAAAAGCGCAAACACGCGACCC---------TCGGC-------CACGCGTAGTCCTGGTCC-----------------------CAGGGATCGGACGTAATGTTATCCTTT---
      ananassae  GCAAACAAAAAGCGCAAACACGCGACCC---------TCG---------CACGCGCAATCGCCATCC-----------------------TCGGGATCGGACGCAATGTTATCCTTTTTG
  pseudoobscura  GCAAACAAAAAGCGCAAACACGCGACCC---------CTGACCAAGAAGCACGCGCAATCCTCATCCG------CAGTCCTGG-----CGTAAGGAT-AAACGTAATGTTATCCTTTT--
     persimilis  ACAAACAAAAAGCGCAAACACGCGACCC---------CTGGCCAAGGAGCACGCGCAATCCTCATCCG------CAGTCCTGG-----CGTAAGGAT-AAACGTAATGTTATCCTTTT--
        virilis  GCAAACAAAAAGCGC-AACACGCGACGCAACAAAGGATC-AC-------TGAAGATGGCAACGGGCTGCCAGAATGGGATTGGAAATGGGTAAGGAGCACGCGCAATATTATCCTTT---
     mojavensis  GCAAACAAAAAGCGC-AACACGCGACGCAACAAAGGATCTGC-------TTCGAATG-----GGTCTG--AGAATGGGAATGG-AATGGGTAAGAAGCACGCGCAATATTATCCTTT---
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---GGCCGCCC---------------AGTGCCACGAAATAAATTCGG-----AGGGAAAGGGC---ATCGGGTTCCGGGAACAACTGGCAGCCAGTCTT----------CGGT-----GT
       simulans  ---GGCCGCCC---------------AGTGCCGCGAAATAAATTCGG-----AGGGAAAGGGC---AGCGGATTCCGGGAACAACTGGCAACCAGTCTT----------CGGT-----GT
      sechellia  ---GGCCGCCC---------------AGTGCCGCGAAATAAATTCGG-----AGGGAAAGGGC---AGCGGATTCCGGGAACAACTGGCAACCAGTCTT----------CGGT-----GT
         yakuba  ---GGCCG-CC---------------AGTGCCACGAAATGAATTCGG-----CGGGAAAGGGC---AACGGATTCCGGGAACAACTGCCACCCAGTCCT----------CGGT-----GT
         erecta  ---GGCCG-CC---------------AGTGCCGCGAAATAAATTCGG-----AGGGAAAGGGC---AGCGGATTCCGGGAACAACTGGCAGCCAGTCCT----------CGGT-----GT
      ananassae  GGCGGACG-AC---------------GGAGCCGCGAAATAAATTCGT-----AGGGAAAGGGC-----CCGATTCCGGGAACAACTGGCAGCCAGTCCT--------GACAGA-----AT
  pseudoobscura  ---GGCAGCCCATTCCA----GGACGAGGCCCGAGGAATCGATGCCG-----AATCGATGCG------TGGATTCCGAGAACAACTGGCATCAGCTTCC----------CGGTTCAGAGC
     persimilis  ---GGCAGCCCATTCCA----GGACGAGGCCCGAGGAATCGATGCCG-----AATCGATGCG------TGGATTCCGAGAACAACTGGCATCAGCTTCC----------CGGTTCAGAGC
        virilis  ---CACAG-CCTTCCCGCCCTTGCCTTGATACACGTAACCAGTTCCAACTCTACTCTAAGGCTTCTATCAGATTCCTAGAACGAATGGCAGCAGCTTCG----------CTAC-----GT
     mojavensis  ---CGCAG-CCTTTGCGCCTTCTGCTTGATATACGCAACCAGTTGAA-----AGTCCAGGGCT--AATCAGATTCCTGGAACAACTGGCAGCAGCTTCG-----CTTCCCTTC-----AT
      grimshawi  ----------------------------------------------------------------------GATTCCTGGAACCTCTGGCAGCAGCTTCGGTACGATTCCCTTC-----AT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTTGCGCGCTGGCAAAAATCCAGAGAAATTTTTAGG------------GA--------------------ACCATAAA-C--GGGCC--GGGGAAAAAGCCT-CTGCCCCGAAGGAACGT
       simulans  TTTGCGCGCTGGCAAAAATCCAGAGAAATTTTTAGG------------GA--------------------ACCATAAA-C--GGGCC---GGGAAAAAGCCT-CTGCGCCGAAGGAACGT
      sechellia  TTTGCGCGCTGGCAAAAATCCAGAGAAATTTTTAGG------------GA--------------------ACCATAAA-C--GGGCC--GGGGAAAAAGCCT-CTGCGCCGAAGGAACGT
         yakuba  TTTGCGCGCTGGCAAAAATCCAGATAAATTTTTAGG------------GA--------------------ACCATAAA-C--GGGTC--GGGGAAACAGCCT-CTGCGCCGAAGAAACGT
         erecta  TTTGCGCGCTGGCAAAAATCCAGATAAATTTTTAGG------------GA--------------------ACCATAAA-C--GGGTC--GGGGAAAAAGCCT-CTGCGCCGAAGGAACGT
      ananassae  CTT-CG-GTTGGCAAAAATCCAGAGAAATTTTTAGG------------GA--------------------ATCATAAA-C--GGGGC--AGGGAAAAAGCCT-TT-TGTCGAAGGATCG-
  pseudoobscura  TCCGCGCTATGGAAAAAATCCAGAGAAATTTTTACGAAGGGCCAGAACGA--------------------ACCATAAATC--GGGTCTAAGGGAAAAAGCCCATTGTTCGGACAGAG---
     persimilis  TCCGCGCTATGGAAAAAATCCAGAGAAATTTTTACGAAGGGCCAGAACGA--------------------ACCATAAATC--GGGTCTAAGGGAAAAAGCCCATTGTTCGGACAGAG---
        virilis  TGCAGG-------------CCGGAGAAATTTTTACG------------AATTTGCTGCTGCCGCGCGGCGACAATAAA-C--GGGCCAAAAGGAAAAGCCTT-TTGTGCCAAC----CGT
     mojavensis  TGCCGG-------------CCGGAGAAATTTTGACG------------AATTTGCTGCTGCTGC-------TGCTAAA-C--GGG-CAAAAGGAAAAGCCTT-TTGTGCCAAC----CGT
      grimshawi  TTCGGG-------------CCAGAGAAATTTTTACG------------AATTTGTTGCTGCCGGCCTGTGACAATAAA-CCAGGGCCAGAAGGAAAAGCCTT-TTGTGCCAAA----CCG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRBBRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTTCAGCAAC------A--GTT---------------------TACAG----------TTTTTATGTCTTTATGATTATTGCAATT----------AGAGGGAGATCGGCTGAG------
       simulans  TTTCAGCAAC------A--GTT---------------------TACAG----------TTTTTATGTCTTTATGATTATTGCAATT----------AGAGGGAGATCGGCTGAG------
      sechellia  TTTCAGCAAC------A--GTT---------------------TACAG----------TTTTTATGTCTTTATGATTATTGCAATT----------AGAGGGAGATCGGCTGAG------
         yakuba  TTTCATCAAC------A--GTTTACAGTTTACAGTTTACAGTATACAG----------TTTTTATGTCTTTATGATTATTGCAATTAGAGAGAGAGAGAGAGAGATCGGCTGAG------
         erecta  TTTCAGCAAC------A--GTT---------------------TACAG----------TTTTTATGTTTTTATGATTATTGCAATT----------AGAGGGAGATCGGCCGAG------
      ananassae  TTTCAGCAAC------A--GTTTACCGCTTACCGTTTGCAGTTTACAG------TTCCTTTTTATGTCTTTATGATTATTGCAATT----------AGAGTGGGA------GGG------
  pseudoobscura  TTTCAGCAAC------ACGGTT---------------------TACAG------TTCCTTTTTATGTCTTTATGATTATTGCAATT----------AGAGAGAGGAATGC-GAA------
     persimilis  TTTCAGCAAC------ACGGTT---------------------TACAG------TTCCTTTTTATGTCTTTATGATTATTGCAATT----------AGAGAGAGGAATGC-GAAAGCAGC
        virilis  TTTAGCAAAC---------GTT---------------------TACAGTTTACAGTTCTGTTTATGTCTTTATGATTATTGCAATT----------AGAAGAAAGCAG---CAA------
     mojavensis  TTTTAGCAACGTTTACA--GTT---------------------TACAGTTTACAGTTCTGTTTATGTCTTTATGATTATTGCAATT----------AGAGGAAAGCAG---CGA------
      grimshawi  TTTTAGCAAC---------GTT---------------------TACAGTTTACAGTTCTGTTTATGTCTTTATGATTATTGCAATT----------AGAGGAATGCAG---CAA------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---AGTCG-------------CGCCCTCTCGCT---------CTGC-----GCACC----------T----CATAGGTAGGCACCTCAT------------GGCCGTAATTA--------
       simulans  ---AGTCG-------------CGCCCTCTCGCT---------CTGC-----GCACC----------T----CATAGGTAGGCACCTCAT------------GGCCGTAATTA--------
      sechellia  ---AGT---------------CGCCCTCTCGCT---------CTGC-----GCACC----------T----CATAGGTAGGCACCTCAT------------GGCCGTAATTA--------
         yakuba  ---AGTCG-------------CGCCCTCTCGCT---------CTGC-----GCACC----------T----CATAGGTAGGCACCTCAT------------GGCCGTAATTA--------
         erecta  ---AGTCG-------------CGCCATCTCGCT---------CTGT-----GCACC----------T----CATAGGTAGGCACCTCAT------------GGCCGTAATTA--------
      ananassae  ---AAGCTC--------CGTCCGCCGTCCCGCTCGCAGCTCGCTGCTCGCAGCACC----------T----CATGGGTAGACATCTCAT------------GGACGTAATTA--------
  pseudoobscura  ---AGCAGCATCAGCAGCAGCCGCCGTCCCGCT---------C-GC-----CCACCCATCCA---TC----CATCCTCATCTGCCTCATCTACCTATCGACGGCTGTAATTACGAGACAA
     persimilis  AGCAGCAGCATCAGCAGCAGCCGCCGTCCCGCT---------C-GC-----CCACCCATCCA---TC----CATCCTCATCTGCCTCATCTACCTATCGACGGCTGTAATTACGAGACAA
        virilis  ---AACATC------------AGCCATCCCGCT---------C-AC-----CCACCTACCCGAGGCT-CGACTTAATTACGCGCCCGTG------------GGACGTC------------
     mojavensis  ---ACCAGC------------CGCTGTCCCGCT---------C-GC-----CCACCTACCCGAGGCT-CGACTTAATTACGCGCCTGTG------------GGACGTC------------
      grimshawi  ---AGCAGT------------CGCCATCCCGCT---------C-GC-----GCACCTACAAACGTATGCGACTTAATTACGCGCCTGTG------------GGACGTC------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----CTGC--------AGCACCGTCTCAAGGTCGCC-----GA----------------------GTAGGAGAAGCG------CGC--------------------------GGG--CGG
       simulans  ----CTGC--------AGCAGCGTCTCAAGGCCGCC-----GA----------------------GTAGGAGAAGTG------CGC--------------------------GGG--CGG
      sechellia  ----CTGC--------AGCAGGGTCTCAAGGCCGCC-----GA----------------------GTAGGAGAAGTG------CGC--------------------------GGG--CGG
         yakuba  ----CTGC--------AGCAGCGTCTCAAGGTCGCC-----GA----------------------GGAGGAGAAGTG------CGC--------------------------GGG--TGG
         erecta  ----CTGC--------AGCAGCGTCTCAAGGTCGCC-----GA----------------------GGAGGAGAAGTG------CGC--------------------------GGG--TGG
      ananassae  ----CTGG--------ACCAGCGTCTCAAGGACGC--------------------------------AGGGGAAATTCTCAGCCTC--------------------------GGC--CGG
  pseudoobscura  GGTCCTGCGCACG---ACAAGCGTCTCAAGGCTCTC-----AAGGCTGGAACCGATCGGATCTCTGGAGGGGAAATG------CTCTCTCGGCTGTCGGCTCTCGTCTCTCGGTC--CGG
     persimilis  GGTCCTGCGCACG---ACAAGCGTCTCAAGGCTCTC-----AAGGCTGGAACCGATCGGATCTCTGGAGGGGAAATG------CTCTCTCGGCTGTCGGCTCTCGTCGCTCGGTC--CGG
        virilis  ----CTGCGCACGTCTCAAGGCAACTCAAGGACACGGCCC-GC----------------------GCAGGGGAAATG------CTC--------------------------GAGCACGG
     mojavensis  ----CAGCGCACGTCTCAAGGCATCTCAAGGACGCGGCTCGGC----------------------GCAGGGGAAATG------CT--------------------------------CGG
      grimshawi  ----CTGCGCACGTCTCAAGCCGACTCAAGGACACCGTTG-TC----------------------GTAGGAGAAATA------CGC--------------------------CGA--CGG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATAAA--------------TCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGC-CGCGCAGCAGGTAGGCA---------------------CCG------------TA--------
       simulans  ATAAA--------------TCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGC-CGCGCAGCAGGTAGGCC---------------------CCG------------TA--------
      sechellia  ATAAA--------------TCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGC-CGCGCAGCAGGTAGGCT---------------------CCG------------TA--------
         yakuba  ATAAG--------------TCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGC-CACGCAGCAGGTAGGCT---------------------CCG------------TA--------
         erecta  ATAAA--------------TCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGT-CGCGCAGCAGGTAGGCC---------------------CCG------------TA--------
      ananassae  ATAAC--------------TCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGC-AGCACAGCAGGTAGGCT---------------------CCG------------AA--------
  pseudoobscura  ATAAGTTTTTG--AACGCTTCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGC-AGCACAGCAGGTAGGCT---------------------CCT------------CAG-------
     persimilis  ATAAGTTTTTG--AACGCTTCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGC-AGCACAGCAGGTAGGCT---------------------CCT------------CAG-------
        virilis  ATAACTTGCTGC-AAC---TCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGC-TGCGCAGCAGGTAGGCC---------GGCCATGAGAATTCG-----------CCACTCGGT--
     mojavensis  ATAACTTGCAGCAAAC---TCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGCAGGCGCAGCAGGTAGGCCAA-GGTAGAGACGAATAGCGCTCG------------CACTGTGC--
      grimshawi  ATAAGTTTCGCC-AAC---TCGCGATGATAATGGGCGCGATGGGTAGGTAATAAGC-AGCGCAGCAGGTAAGCAAGCTATGAGGACGACTCCTGCTCGATGTGACTCTCTCACTCTCTCT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -----------CGGAT-AAA-GTT------GCCAGGACCT-----CGGATAACT---TCC----------------CCTCTCCGT-------------GCC--------TGCAAGGACAT
       simulans  -----------CGGAT-AAA-GTT------GCCAGGACCT-----CGGATAAGT---TCC----------------CCTCTCCGT-------------GCC--------TGCAAGGACA-
      sechellia  -----------CGGAT-AAA-GTT------GCCAGGACCT-----CGGATAACT---TCC----------------CCTCTCCGT-------------GCC--------TGCAAGGACAT
         yakuba  -----------CGGAT-AAA-GTT------GCCAGGACCT-----CGGATAACT---TCC----------------CCTCTCCTT-------------GCC--------TGCAAGGCCAT
         erecta  -----------CGGAT-AAA-GTG------GCCAGGACCT-----CGGATAATT---TCC----------------CCTCTCCGT-------------GCC--------TGCAAGGACGT
      ananassae  -----------CGGAT-AAC-TCG------GCGAGTCCTC-----CGGATAACT---TCC----------------CCTCTCGCT-------------GCC--------TGCAAGGACAT
  pseudoobscura  -----------CGGAT-AA------------CTTGCACTCCCGAACGGATAAAC---TCTGCTCTGTACT--GCTACCCCTCTGTCGCAGCCATAAACGCC--------GGCAAGGACAC
     persimilis  -----------CGGAT-AA------------CTTGCACTCCCGAACGGATAAAC---TCTGCTCTGTACT--GCTACCCCTCTGTCGCAGCCATAAACGCC--------GGCAAGGACAC
        virilis  -----------CGGATAAAACGTT------GCCCGGC--------CGGATAAGC---GCT----------GCCCTACCCCTGCCA-------------GCAATAAATCTGGCTAGGTCCT
     mojavensis  -----------CGGAT-AAACGTTCGTTTGGCCGGGC--------CGGATAAAC---TGC----------GCGCTACCCCTGCGA-------------GCCATAAATCTGGCAAGGTCCT
      grimshawi  CTCGCTCTGAGCGGAT-AACTG--------GACTGG---------CGGATAAACGTTGCT----------GCACTACCCCTGCAA-------------GCAATAAATCTGGCAAGGTCCT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTCGCC----------------GGAGGGGTGGCT---GCGAACAGCAGGCGGCAAAGTGTCATGCGCAGGGATATTTATGCGCTATAAC--GGCGAGCGTGTGCCGAGG-----------
       simulans  TTCGCC----------------GGAGGGGTGGCT---GCGAACAGCAGGCGGCAAAGTGTCATGCGCAGGGATATTTATGCGCTATAAC--GGCGAGCGTGTGCCGAGG-----------
      sechellia  TTCACC----------------GGAGGGGTGGCT---GCGAACAGCAGGCGGCAAAGTGTCATGCGCAGGGATATTTATGCGCTATAAC--GGCGAGCGTGTGCCGAGG-----------
         yakuba  TTCCCC----------------AGAGGGGTGGCT---GCGAACAGCAGGCGGCAAAGTGTCATGCGCAGGGATATTTATGCGCTATAAC--GGCGAGCGTGTGCCGAGA-----------
         erecta  TTCCCC----------------GGAGGGGTGGCT---GCGAACAGCAGGCGGCAAAGTGTCATGCGCAGGGATATTTATGCGCTATAAC--GGCGAGCGTGTGCCGAGA-----------
      ananassae  TTCGCA---------------GGGAGGGGTGGTT----CGAACAGCAGGCGGCAAAGCGTCATGCGCAGGGATATTTATGCGCTATGAC--GAGCAGCGTGTGCCGTGC-----------
  pseudoobscura  GGCCCAGTGAGGCCGAGGCCGGGGAGGGGTAGTTCTCGGGCCCAGCATGTGTCAAAGTGTCATGCGCAGGGATATTTATGCGCTATGAC--GACGAGCGTGTGCCGGGC-----------
     persimilis  GGCCCAGTGAGGCCGAGGCCGGGGAGGGGTAGTTCTCGGGCCCAGCATGTGTCAAAGTGTCATGCGCAGGGATATTTATGCGCTATGAC--GACGAGCGTGTGCCGGGC-----------
        virilis  GG--CC----------------GGAGGGGTAGTA----CGCGCAGCATGTGTCAAAGTGTCATGCGCAGGGATATTTATGCGCTATGACGAGGAGCGCGTGTGCCGTTCGCAGTCCGCAG
     mojavensis  GG---C----------------GGAGGGGTAGGG----CGCGCAGCATGTGTCAAAGTGTCATGCGCAGGGATATTTATGCGCTATGAC---GAGCGCGTGTGCCAAAC---ATCAGCA-
      grimshawi  GG----------------------AGGGGTAGTG----AGCGCAGCATGTGTCAAAGCGTCATGCGCAGGGATATTTATGCGCTATGAC---GAGCGCGTGTGCCGTGC---ATCAGT--
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------GCTC--TCTG----------------ATTTTG-----CTATA-T--ATGCAGGATCTGCCGCAGGACCAGCTCATTCGCAAACTCACCAGCGTTGCGTGCACATCG--------
       simulans  ------GCTC--TCTG----------------ATTTTG-----CTATA-T--ATGCAGGATCTGCCTCAGGACCAGCTCATTCGCAAACTCACAAGCGTTGCGTGCACATCG--------
      sechellia  ------GCTC--TCTG----------------ATTTTG-----CTATA-T--ATGCAGGATCTGCCGCAGGACCAGCTCATTCGCAAACTCACCAGCGTTGCGTGCACATCG--------
         yakuba  ------GCCC--TCTG----------------ATTTTG-----CTATA-T--ATGCAGGATCTGTCGCAGGACCAGCACATTCGCAAACTCACCAGCGTTGCGTGCACATCG--------
         erecta  ------GCTC--TGTG----------------ATTTTG-----CTATA-T--ATGCAGGATCTGTCGCAGGACCAGCTCATTCGCAAACTCACCAGCGTTGCGTGCACATCG--------
      ananassae  ------CTCG--CAGG----------------ACTTTG-----CTATA-T--ATGCAGGATCTGCCGCAGGACCAGCTCATTCGCAAACTCACCAGCGACGCGTTCACATCG--------
  pseudoobscura  ------ATCA--GTGGAAGCTGAGTTCAGTTCAGTTTG-----CTATATT--AGGCAGGATCTGTGGCAGGAGTAGCTCATTCGCAAACGCATCAGCGTCGCGCACACATCGCAC---TC
     persimilis  ------ATCA--GTGGAAGCTGAGTTCAGTTCAGTTTG-----CTATATT--AGGCAGGATCTGTGGCAGGAGTAGCTCATTCGCAAACGCATCAGCGTCGCGCACACATCGCAC---TC
        virilis  TCCGCAGTTC--CACG----------------ACTCTGC----CTATA-TTAAGGCAGGATCAGAGAGCATAGCAGCTCATTCGCAAACGCAGCAGCGCCGCGCAAACATCGTTCATTCC
     mojavensis  -TCGCAGCTCGACTCG----------------ACTCGGCTCGGCTATA-TTAAGGCAGGATCACGGGGCTGAGCAGCTCATTCGCAAACGCAGCAGCGTCGCGCACACATCGTTCATTTC
      grimshawi  -TCGCAGTTC--GACG----------------CTTAGG-----CTATA-TTAAGGCAGGATCAGGGGATAGAGCAGCTCATTCGCAAACGCAGCAGCGTCGCGCACACATCGCACACATC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---CAG--------AG--------TTAGAGAAGAAATCTAGCAATAC--ACAT--CCGATATGGCCACCACAAACAGCCAGAGCCACTACAGCTA---CGCCGACAACATGAACATGTAC
       simulans  ---CAG--------AG--------TTAGAGAAGAAATCTAGCAATAC--ACAT--CCGATATGGCCACCACAAACAGCCAGAGCCACTACAGCTA---CGCCGACAACATGAACATGTAC
      sechellia  ---CAG--------AG--------TTAGAGAAGAAATCTAGCAATAC--ACAT--CCGATATGGCCACCACAAACAGCCAGAGCCACTACAGCTA---CGCCGACAACATGAACATGTAC
         yakuba  ---CAG--------AG--------TTAGAGAAGCAATCTAGCAATAC--ACAT--CCGAGATGGCCACCACAAACAGCCAGAGCCACTACAGCTA---CGCCGACAACATGAACATGTAC
         erecta  ---CAG--------AG--------TTAGAGAACAATTCTAGCAACAC--ACAT--CCGAGATGGCCACCACAAACAGCCAGAGCCACTACAGCTA---CGCCGACAACATGAACATGTAC
      ananassae  ---CAG--------AGGTTGCAGTTCAAAGACGAAAAGT-GCATCAT--ACATCACAGACATGGCCGCCA---------ACAGCCACTACAACTACTCCGCCGAGAACATGAACATGTAC
  pseudoobscura  TCTCAG--------AG--------C---AGAAGAACCAGAACAGAGT--CCAC--CAGCCATGGCCACCACCAACAGTCAGAGCCACTATTA------CGCTGATA------ACATGTAC
     persimilis  TCTCAG--------AG--------C---AGAAGAACCAGAACAGAGT--CCAC--CAGCCATGGCCACCACATGTCGCCACATCAGCTCCAG------CATCAGCACC---CCCATGCGC
        virilis  GCTCAG--------AG-----------------------GACATAAGACACAG--ACACAATGGCAGCCACCAATACGCACAGCCACAGCTACTA---TGCTGACA------GCATGTAC
     mojavensis  GTTCAC--------AG-----------------------GACAACAG--ACAG--ACGCAATGGCAGCCACCAACACACA---------CTACTA---TGCCGACA------GCATGTAC
      grimshawi  ACTTACGTACAGCAAG-----------------------GACTCGAC--ACAG--ACGCAATGGCAGCCACGAATACGCACAGCCATAGTTACTA---TGCCGACA------GCATGTAC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AACATGTATCACC---------CCCACAGCCTGCCGCC----------CA------CCTACTACGATAATTCAG------GCAGCAATGCCTACTATCAGAA------------------
       simulans  AACATGTATCACC---------CCCACAGCCTGCCGCC----------CA------CCTACTATGATAATTCAG------GCAGCAACGCCTACTATCAGAA------------------
      sechellia  AACATGTATCACC---------CCCACAGCCTGCCGCC----------CA------CCTACTATGATAATTCGG------GTAGCAACGCCTACTATCAGAA------------------
         yakuba  AACATGTATCACC---------CCCACAGTCTGCCGCC----------CACTACGCCTTACTACGAGAACTCAG------GCTGCAACACCTACTATCAGAA------------------
         erecta  AACATGTATCACC---------CCCACAGTCTGCCACC----------CA------CCTACTACGATAATTCAG------GCAGCAACACCTACTACCAGAA------------------
      ananassae  AACATGTACCACC---------ACCACAGCCTGCCTCC----------CA------CCTACTACGACAACGCCT------CCGGCAACGGCTACTACCAGGC------------------
  pseudoobscura  AACATGTATCACCATCACACCGCCCACAGCCTGCCGCC----------CA------CGTACTATGA------------------CAACAGCTACTACCAGAGTGCCACACAGAGTACTGC
     persimilis  ATCA-GCACCAGCAT--CCTCATCCACA-TCTATCGCCGGCCCAGCAGCA------TGTTCTGCAC------------------CAGCACCTCCT-------------------------
        virilis  AACATGTACCATC------------ACGCCCTGCCACC----------CA------CATACTACGATAACACCAGCAGCGGCAGCAGCAGCTATTACCAGAG------------------
     mojavensis  AACATGTACCACC------------ATGCCCTGCCACC----------CA------CATACTACGACAACACGAGCA---GCAGCAGCAGCTACTACCAGAG------------------
      grimshawi  AACATGTACCACC------------ATGGCCTGCCGCC----------CA------CCTACTACGATAATA---------GCAACAGCTACTACCAGCAGAG------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----CACCTCC-----------------AAT---------------TATCAG---GGCTACTATC---------------C---------CCAGGAGAGTTACTCGGAGAGCTGCTACTA
       simulans  ----CAGCTCC-----------------ACTTACCA------GAGCTATCAG---GGCTACTATC---------------C---------CCAGGAGAGTTACTCGGAGAGCTGCTACTA
      sechellia  ----CAGCTCC-----------------ACTTACCA------GAGCTATCAG---GGCTACTATC---------------C---------CCAGGAGAGTTACTCGGAGAGCTGCTACTA
         yakuba  ----CAGCTCC-----------------ACTTACCA------GAGCTATCAG---GGCTACTATC---------------C---------CCAGGAGAGTTACTCGGAGAGCTGCTACTA
         erecta  ----CAGCTCC-----------------ACCTACCA------GAGCTATCAA---GGCTACTATC---------------C---------CCAGGAGAGTTACTCGGAGACATGCTACTA
      ananassae  ----CAGCTCC-----------------AGCTATCA------GAGCTACCAG---GGCTACTATC---------------C---------CCAGGAGAACTACTCGGAGAACTGCTACTA
  pseudoobscura  CAGCCAGTGGC-----------------AGCCATCG-CCAGCCAGCTATCAG---AGCAACTACGGAGCAGCCTATGGAGT---------CCAGGAGAGCTACTCGGACAGTTGCTACTA
     persimilis  CATGCAGCAGC-----------------AGGGCACA-CCCAAGACCCACCAG---GACATCCATG--------------------------------------------ACCTGCTGCAA
        virilis  ----CAACTCCATGGCTTCC--ACAGCCAGCTGGCAGCCGGCGAACTACCAGGCCGGCAGCTACG---------------TGCAGTACGGCCCGGAGAGCTACAGCGAGAGCTGCTACTA
     mojavensis  ----CAAC---------------CAG--AGCTGGCAGCCGGCGAGCTATCAGCCCAGCAGCTACG---------------CCCACTACAGCCAGGAGAGCTACAGTGAGAGCTGCTACTA
      grimshawi  ----CAACTCCACCTCCTCCTGCTCG--AGTTG---GCCGACGAGCTACCAGCCCAGCAGCTATG---------------CACAGTACGGCCAGGAGAGCTACGGCGAGAGTTGCTACTA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  C----------TACAACAATCAG------------GAGC----AGGTG-------ACCAC-----------------------------CCAGACT--------GT---ACC--------
       simulans  C----------TACAACAACCAG------------GAGC----AGATG-------ACCAC-----------------------------CCATACT--------GT---ACC--------
      sechellia  C----------TACAACAACCAA------------GAGC----AGGTG-------ACCAC-----------------------------CCAGACT--------GT---ACC--------
         yakuba  C----------TACAACAACCAG------------GAGC----AGGTGACC----ACCAC-----------------------------CCAGACT--------GTCCCACC--------
         erecta  C----------TACAACAACCAG------------GAGC----AG----------ACCAC-----------------------------CCAGACC--------GT---GCC--------
      ananassae  C----------TATGGCCAGCAG------------GAAC----AGGTGCCCCA--AGTGC-----------------------------CCGAGGT--------GC---CCC--------
  pseudoobscura  CGCC-------CAGAGCAGCTAC------------AGTCCCATAGATGCCACAGTTCCACAG-------------------------ATTCCAGCG--------GT---GCC------AG
     persimilis  CGCCTGCACCACAACGCGGCCGT------------GGCC-----AGCGGCATGAGTCCGC-----------------------------TCCAGAC--------AC---GTC--------
        virilis  C----------GCCAACTAC---------------CAGC----AGACTACCCT--GCCACAG---------------------------CCCGAACCCGCTGCAGT---GCCTCAGTACC
     mojavensis  T----------GCCAACTACCATCATCAGCAGCAACAGC----AGACACAGCA--GCCACAGCAGCAGCAGCCATTGTGCCTACCCGCTCTCGATGCA------GT---GCCTCAGTACC
      grimshawi  C----------TCCAACTACCAGCACCAG------CACC----AGCTCCAGCA--GCAACAGCAGCAGCAGACAATGACAATGCCTGCTCCAGCTGCA------CT---GCCTCATTACC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----GCCCGT-------------------------------GCAACC----------CACCACCCCGCCGCCCAA---GGCCACCAAGCGCAAGGCCGAAGATGATGCTGCTTCCATCAT
       simulans  ----GCCCGT-------------------------------GCAACC----------CACCACCCCGCCGCCCAA---AGCCACCAAGCGTAAGGCCGAAGAAGATGCTGCTTCCATCAT
      sechellia  ----GCCCCT-------------------------------GCAACC----------CACCACCCCGCCGCCCAA---GGCCACCAAGCGTAAGGCGGAAGAAGATGCTGCCTCCATCAT
         yakuba  ----GCCCGT-------------------------------GCAAAC----------CACCACCCCGCTGCCCAA---GGCCGCCAAGCGTAAGGCCGAAGAAGACGCCGCCTCCATAAT
         erecta  ----GCCCGT-------------------------------GCAACC----------CACCACCCCGCCGCCCAA---GACCACCAAGCGTAAGGCCGAAGAGGATGCTGCTTCCATCAT
      ananassae  AGGTAACCCA-------------------------------ACAGCC----------CGCCACCCCTCCGCCCAA---GGCCGCCAAGCGCAAGGCCGAAGAAGATGCCGCCTCCATCAT
  pseudoobscura  CGATGCCTGA-------------------------------GCCCAT----------CCTTGCCGCCTCTCCCGTGAAGACGCGGAAGCGCAAGGCCGAAGATGCTGCCGCT---GTCAT
     persimilis  TCTCTCCCGA-------------------------------GTCGGA----------CGCAGCGCCCGCTCCCGT---TTCCCTCAAGCG------CGAGCGTTCTCCGGCT--------
        virilis  ATCCGACAGC--------AGTCGCTGAGCCCTTCACCAAAGCCAACT----------CGC--CCGCGCCCGTCAA---GAGCCGCAAGCGCAAGGCGGAGGAATCTGCTGCCGAGATCAT
     mojavensis  AAGTGCCCAC--------AGTTGCCGAGCCAAGCGTTGAAGCCAGCT----------CGC--CTGCTCCGGCTAA---GAGCCGTAAGCGCAAGGCAGAGGAATCCGCCGCGGACATCAT
      grimshawi  AAGCACCAGCTCCGGTTTCGGTTCCGGTTCCGGCTCCGGCTGCAGCTACAGTGACCACAC--CCGCCCCACTGAA---GAGCCGCAAGCGGAAGGCAGAGGAGAGCGCTGCGGACATCAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CGCCGCCGTGGA-GGAGCGA-------------CCCAGCACACTGAGGGCTC-----TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTACACAACCGTCGAGC
       simulans  CGCTGCCGTAGA-GGAGCGA-------------CCCAGCACACTGAGGGCTC-----TACTCACCAACCCCGTGAAGAAGCTGAAGTACACCCCCGACTACTTCTACACCACCGTCGAGC
      sechellia  CGCCGCCGTGGA-GGAGCGA-------------CCCAGCACACTGAGGGCTC-----TACTCACCAACCCCGTGAAGAAGCTGAAGTACACCCCCGACTACTTCTACACCACCGTCGAGC
         yakuba  CGCTGCCGTGGA-GGAGCGA-------------CCCAGCACCCTGAGGGCCC-----TGCTCACCAACCCCGTGAAGAAGCTGAAGTACACCCCCGACTACTTCTACACCACAGTCGAGC
         erecta  CGCCGCCGTGGA-GGAGCGA-------------CCCAGCACGCTGAGGGCGC-----TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTACTTCTACACCACAGTCGAGC
      ananassae  TGCCGCCGTCGA-GGAGCGA-------------CCCAGCACTCTGAGGGCCC-----TGCTCACGAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTACTTCTACACAACCTTGGAGC
  pseudoobscura  TGCCGCCGTCGA-GGAGCGA-------------CCCAGCACACTCCGTGCTC-----TGCTGACGAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTACTTCTACACCACCTTCGAGA
     persimilis  --CCACCGTCCATGGAGCAGGCCGAGAATCCCTCCCAGCGTATTCAGCCGCCACACACGCCTCCGAAATCCGTG----------------------------------------------
        virilis  TGCTGCCGTGGA-GGAGCGA-------------CCCAGCACACTGCGCGCCC-----TGCTCACCAATCCCGTGAAGAAACTAAAATACACGCCCGATTATTTTTACACGACAATAGAGC
     mojavensis  CGCCGCCGTGGA-GGAGCGA-------------CCCAGCACACTACGCGCCC-----TGCTCACCAATCCCGTCAAGAAGCTGAAGTACACGCCCGACTACTTCTACACGACGATCGAGC
      grimshawi  TGCCGCCGTGGA-GGAGCGA-------------CCAAGCACATTGCGTGCCC-----TGCTCACGAATCCCGTCAAGAAACTGAAATACACGCCCGACTATTTCTACACCACGTTCGAGC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGGTGAAGAAGGCTCCCGCCGTA-----AGC------ACCAAG------GTCACCGCCAGCCCC-----GCTCCCAGCTACGACC------------AAGAGTAC----------GTGAC
       simulans  AGGTGAAGAAGGCCCCCGCCGTA-----ACC------ACCAAG------GTCGCCGCCAGCCCC-----GCTCCCAGCTACGAGC------------AAGAGTAC----------GTGAC
      sechellia  AGGTGAAGAAGGCCCCCGCCGTA-----ACC------ACTAAG------GTCGCCGCCAGCCCC-----GCTCCCAGCTACGAAC------------AAGAGTAC----------GTGAC
         yakuba  AGGTGAAGAAGGCCCCCGCCGTC-----ATC------TCTAAG------GTCGCCGCCAGCCCC-----GCCCCCAGCTACGAGC------------AAGAGTAC----------GTGGC
         erecta  AGGTGAAGAAGGCCCCCGCCGTA-----ACC------TCCAAG------GTCGCCGCCAGCCCC-----GCCCCCAGCTACGAGC------------AAGAGTAC----------GTGGC
      ananassae  AGGTCAAGAAGACGCCTGCCCCC-----ACC------ACCAAGGCCACCGCCGCCGCCAGTCCC-----GCCCCCAGCTACGATC------------AAGAGTAC----------GTGAC
  pseudoobscura  CGGTGAAGAAGAGCCCGGCCACAGTGCCAGC--GCAGATTAAG------GCCAGCTCCAGTCCC-----GCTCCCAGCTACGAGC------------AGGAGTAC----------GTGGC
     persimilis  --GCACAACACGCCCCCGCAGCAGCAGCAGCCACCAAACTA-------------CCCCAAGCCCGGAATGCATCCGGCCG-GAGCCATGATGATGCAAGGAATGCCGCCAGCCGGCTTGG
        virilis  CCGTGAAGAAG--CCCAGC---------AAG------AGCAGC------TCCGCCGGCGAGCTG-----TCGCCCTGCTATGAGC------------AGGACTAT-------------GC
     mojavensis  ACGTGAAGAGG--CCCAGC---------AAG------AGCAGC------TCCGCCGGCGAGCTG-----TCGCCCTGCTACGAGC------------AGGACTAC-------------GC
      grimshawi  AGGTGAAGAAG--CCCAAC---------AGG------AGCAGC------TCCGCCGGAGAGCTG-----TCACCCTGCTACGAGC------------AGGACTAC-------------GC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGTGCCCACGCC---------------------------------CAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG------------CAGACGCAGAAGCT
       simulans  TGTGCCCACGCC---------------------------------CAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG------------CAGACGCAGAAGCT
      sechellia  TGTGCCCACGCC---------------------------------CAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG------------CAGACGCAGAAGCT
         yakuba  TGTGCCTACGCC---------------------------------CAGCGCCTCCGAGGATGTTGACTACTTGGACGTCTACTCGCCCCAGTCG------------CAAACGCAGAAACT
         erecta  CGTGCCCACGCC---------------------------------CAGTGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCGCAGTCCCAGTCCCAGACGCAGAAACT
      ananassae  TGCCCCCACGCC---------------------------------CAGCACCTCCGAGGACGTAGACTACCTGGATGTCTACTCGCCACAGTCC---GCCCAGTCCCAGTCGCTGAAGCT
  pseudoobscura  AGCACCCACTCC---------------------------------CAGCGCCTCCGAGGATGTCGACTATCTCGATGTCTACTCGCCACAGTCC------------CAAA---AGAATCA
     persimilis  TGCGACCCTTCC---------------------------------CCGTGGGCCCA-----GTCGGAC-CCCCGATG-----CCGCCACAGGGA------------CAG----------C
        virilis  CGTGCCCACGCCCTCCACACAGCAGACGCACATGTCGCCGCAGCGCAGCACCAGCGAGGATGTAGACTATCTGGACGTCTACTCGCCGCACAAG------------CAGGC---------
     mojavensis  CGTGCCCACGCCCTCCACACAGCAGACGCACATGTCGCCACAGCGCAGCACCGGCGAGGATGTCGACTATCTGGACGTCTACTCGCCCCGCAAG------------CCGGC---------
      grimshawi  CGTGCCAACGCCCTCCACCCAGCAGACGCACATGTCGCCGCAGCGCAGCAGCAGCGAAGATGTTGACTATCTGGATGTGTACTCGCCACGTAAG------------CAGGC---------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GAAGAATGGCGACTTT------------G---------------------------CCACCCCTCCGCCA------ACCACGCCCAC-------CTCTCTGCCGCC--------------
       simulans  GAAGAATGGCGACTTT------------G---------------------------CAACCCCTCCACCT------ACCACGCCCAC-------CTCTCTGCCGCC--------------
      sechellia  GAAGAATGGCGACTTT------------G---------------------------CCACCCCTCCACCA------ACCACGCCCAC-------CTCTTTGTCGCC--------------
         yakuba  GAAGAATGGCGACTTT------------G---------------------------CCACCCCACCACCA------ACCACGCCCTC-------CACTCTGCCGCC--------------
         erecta  GAAGAATGGCGACTTT------------G---------------------------CCACCCCTCCACCA------ACCACGCCCAC-------CTCTCTGCCGCC--------------
      ananassae  GAAGAATGGCGACTTT------------G---------------------------CCACCCCGCCACCA------ACCACGCCCAC-------CTCCCTGCCGCC--------------
  pseudoobscura  CAAGAATGGCGAATAT-------GTGGCG-GGCACACCACCACCAC----------TAGCCTCTACACCA------GCCACGCCCA----------------CGTC--------------
     persimilis  CCGGCATGCCGGACATCAAGGCCCTGCCGCCGTACATCAACGCCCCGCCAGAGATGCCGCCCCAGCACAA------TCCTCACCTG--------ATCGCCGCCGCC--------------
        virilis  CAAGCATGGCGACTTT------------A---------------------------TTACCCCGCCGCCGGCTGCCACCACGCCCG-CG-----ACGCCCGCCTCCCTGGTCGA------
     mojavensis  CAAACATGGCGACTTT------------G---------------------------TCACCCCACCACCAGCAGCCACCACGCCCGTCG-----ATGGCCTCGGCCTCGGCCT-------
      grimshawi  CAAGCATGGCGACTTT------------G---------------------------TCACCCCGCCACCGGCAGCCACCACGCCCACCGCCACCACACCCGCCTCCCTTGTCGATGGCAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------CC----TCGAAGGCATCAGCACGCCACCCCAAT------CGCCGGGGGAGAAAT--------------CCTCGTCAG------C------TGTC-----AGCCAGGAGATCAAT
       simulans  ------CG----TCGAAGGCATCAGCACGCCACCCCAAT------CGCCGGGGGAGAAAT--------------CCTCGTCAG------C------CGTC-----AGCCAGGAGATCAAT
      sechellia  ------CG----TCGAAGGCATCAGCACGCCACCCCAAT------CGCCGGGGGAGAAAT--------------CCTCGTCAG------C------TGTC-----AGCCAGGAGATCAAT
         yakuba  ------CG----TCGAAGGCATCAGCACGCCACCCCAAT------CGCCGGGCGAGAAAT--------------CCTCGCCAG------C------TGTC-----GGCCAGGAGATCAAT
         erecta  ------CG----TCGAAGGCATCAGCACGCCACCCCAAT------CGCCGGGGGAGAAAT--------------CCCTGTCAG------C------TGTC-----AGCCAGGAGATCAAT
      ananassae  ------CG----TTGAGGGACTCAGCACACCACCCCAGT------CGCCGGGGGAGAAAT-----CCTCGTCCGCCTCGTCAG------C------TGTC-----AGCCAGGAGATCAAT
  pseudoobscura  ------CA-TAGTGGAGGGCATCAGCACGCCACCCCAAT------CGCCCGGAGTCAAGT--------------CCGCCACGG------CATCGAATGTC-----AGTCATGAGATCAAT
     persimilis  ------CAGTTCCAGATGGCTGC----CGCCATTCAAGCGGGACATGTCCTGGGTCCCGCTGCAGCGGCCGCTGCCGCCGCAGGACTGCCACCCCATGCCGCACAATTCATGCCA--AAT
        virilis  ------TG----GGATTGGCATCAGCACGCCACCCCAGT------CGCCGGCCGAGAAGT--------------C-------G------C-------------------ATGAAATCAAT
     mojavensis  ------CG----GCATCGGCATCAGCACGCCACCCCAGT------CGCCGGCCGAGAAGT--------------C-------G------A-------------------ATGAAATCAAT
      grimshawi  TGGTATTG----GCATTGGCATTAGCACGCCACCCCAGT------CGCCGGCCGAGAA------------------------G------A-------------------ATGAAATCAAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CATCGAAT----TGTGACAGCCCC---------G---AATGGA-------GCCGGCGATTTCAATTGGTCGCA-CATCGAGGAGACTTTGGCATCAGGTAGGCATCACACACGATTAACA
       simulans  CATCGAAT----TGTGACAGCCCC---------G---AATGGA-------GCCGGCGATTTCAATTGGTCGCA-CATCGAAGAGACTTTGGCATCAGGTAGGCATCACACACGATTAACA
      sechellia  CATCGAAT----TGTGACAGCCCC---------G---AATGGA-------GCCGGCGATTTCAATTGGTCGCA-CATCGAAGAGACTTTGGCATCAGGTAGGCATCACACACGATTAACA
         yakuba  CATCGAAT----TGTGACAGCCCC---------G---AATGGA-------GCCGGCGATTTCAATTGGTCGCA-CATCGAGGAGACTTTGGCATCAGGTAGGCATCACACACGATTAGCA
         erecta  CATCGAAT----TGTGACAGCCCC---------G---AACGGA-------GCCGGCGATTTTAATTGGTCGCA-CATCGAGGAGACTTTGGCATCAGGTAGGCATCACACATGAATAGCA
      ananassae  CATCGAAT----TGTGACAGGCCC---------G---AGCAAC-------GCAAACGATTTCAATTGGTCGCA-CATCGAGGAGACCTTGGCAGCAGGTAAGGATCATCCCC---CAACA
  pseudoobscura  CATCGAAT----TGTGACAGCTGC---------CAATAGCGGAGTC----GCCGCCGAATTCAATTGGTCGCA-CATAGAAGAGAGCCTCGCATCAGGTAGGCATCGTTC----------
     persimilis  CCTGGCATGGCACGGGACAGCTAC---------C---AGCTCTATCCCTGGCTGCTGAGTCGTCACGGACGCATCTTTCCACACCGTTTCCCTGGAAGTAAGTATCTCTCAC--------
        virilis  CATCGCAT----TGTGACAGCTGC---------C---ACGGGC-------AACAACGAATTTAATTGGTCGCA-CATTGAGGAGACTCTCGCATCAGGTAGGCATCGCACTC--CCACCA
     mojavensis  CATCGCAT----TGTGACAGCTGC---------C---AATGCC-------AGCAACGAATTCAATTGGTCGCA-CATTGAGGAGACCATCGCATCAGGTAGGCATCGCTTTC--------
      grimshawi  CATCGCAA----TGTGACAGCTGCCTCCAGTAGC---AGCAGC-------AACAACGAATTCAATTGGTCGCA-CATTGAGGAGACTCTCGCATCAGGTAGGCATCCCACTC--------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ACCCCTAAAAATACACTTTGAAAATATTGAAAATATGTTTTTGTATACATTTTTGATATTTTCAAACAATACGCAGTTATAAAACTCATT--AGCTAACCCAT--TTTT--TC-TTTGCT
       simulans  ACCCCTAAAAATACATTTCTAAAATATTGAAAATATGTGTTTGTATATATTTTTGATATTTTTAAACACAACACAGTCATAAAAGTCATT--TGCTAACCCAT--TTTT--TC-TTTGCT
      sechellia  ACCCCTAAAAATACATTTCTAAAATATTGAAAATATGTTTTTGTATATATTTTTCATATTTTTAAACACAACACAGTCATAAATGTCATT--TTCTAACCCAT--TTTT--TC-TTTGCT
         yakuba  ACCCCTAAAAATACACATATAAAATATTGAAAATATGTTTTCGTATATATTTTTGATATTTTCAAACAACACACAGCTTAAAAAGTCATA--AACTGACCAAT--GTTT--TC-TTTGTT
         erecta  ACCCCTA-------------AAAATATTGAAAATATGTTTCTGTATATATTTTTGATATTTTCAAACAACACACACTTAAGAAGGTCATA--AACTAACCCAT--GTTT--TC--TTGCT
      ananassae  AAATATGAGTTTACAAATCAAAACTG--GAACTCAAATTTTGATAGCCTCTTTAGAGTTTGACGAACAA--------------------T--GACTAACCAAT--ACTT--TTATTTTAT
  pseudoobscura  -----------------------------CAAGCACATTTTAGCACAATCCAT---------CCCCCATTGAATCGTCTAATGAATCGTT--GACTAACCAAA--TTTTCATC-TTTTTT
     persimilis  ----------------------------TTGGCTGTGCCTCAGCTACCACTCT---------CTCCCACTCCCCAGTCTACAGA-----T--GACTAACCAAA--TGCT--TC-TCTTCT
        virilis  ACCTCT-----------------------CACTCTCACTCACTCTCACACTCTCTCAGT---CACACACTCTCCCTCATTTTGCAACTCTCGTACTTACTTTC--TGCT--TC-TTATCT
     mojavensis  -CCTCT-----------------------CGCTCTCTCTCACGCACACA-------------CACACCCTCGCTATTCTAATGTAACTGT--TACTTACTTTC--TGTT-GCC-TTTTCT
      grimshawi  --------------------------------TCCCTCTCACTCACACACTTC---------CTCTCTCTCTCTCTCAGTTTG-AACTGT--TACTTACTTGCAAAATT--TC-TCTTCT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -TATGC---TTACAGATTGCAAAGACTCG---------------AAACGCA---CCCGTCAGACGTA---C
       simulans  -TATGC---TTACAGATTGCAAAGACTCG---------------AAACGCA---CCCGTCAAACGTA---C
      sechellia  -TATGC---TTACAGATTGCAAAGACTCG---------------AAACGCA---CCCGTCAGACATA---C
         yakuba  -TATGC---TTACA--------------G---------------AGCCGCA---AGAAGCGGTCGCGTGCC
         erecta  -TATGC---TTACAGATTGCAAAGACTCC---------------AAACGCA---CCCGCCAGACGTA---C
      ananassae  -TTTCT---CTTCAGATGGCAAAGACTCG---------------AAGCGCAAGTCCCGCACCGCCTT---C
  pseudoobscura  -GTATC---CTTCAGATTGCAAAGACTCG---------------AAACGCA---CTCGCCAGACCTA---C
     persimilis  -GTTGC---TTTAAGGTTTCCTGGTGCCGCCATTCCGCAAGCCCAAGCGCA---TTCGCACCGCCTT---C
        virilis  -CTGACTTTTTGCAGATTGCAAAGACTC---------------CAAACGCA---CTAGGCAAACCTA---C
     mojavensis  -TTCGTTTCTTGCAGATTGCAAAGACTC---------------CAAACGCA---CACGACAAACCTA---C
      grimshawi  GTTTACCTTTTGCAGATTGCAAAGATTC---------------GAAACGCA---CTCGTCAAACCTA---C
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB


cau