crm
                 
   melanogaster  CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGCTTGCTATCTCGCGCGCTACACAGACGAGGAGACGAAAAATAACGCC--------------------GGACGCTG----------
       simulans  CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGCTTGCTTTCTCGCGCGCTACACAGACGAGGAGACGAAAAATAACGCC--------------------GGACGCTG----------
      sechellia  CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGCTTGCTATCTCGCGCGCTACACAGAC-AGGAGACGAAAAATAACGCC--------------------GGACGCTG----------
         yakuba  CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGCTTGCTATCTCGCGCGTTACACAGACGAGGAGACGAAAAA-ACCGCC--------------------GGATGCTGATCCTGGTTG
         erecta  CTTTACGTATTTTAGTTATCGAG-TTCATCTTCTGCTTGCTATCTCGCGCGCTACACAGACGAGGAGACGAAAAATAACGCC--------------------GGACGCTG----------
      ananassae  CTTTACGTATTTTAGTTATCGAG-TTTATCTTCTGGTT-TTGTTTTTTTCGCAACAAGAACGCGGATGCGAATGC----------------------------GGCGGTG----------
  pseudoobscura  GTTTACGTATTTTAGTTATCGAG-TTTATCTTTCGCTT------TCTCGCGCTACTCAGACGAGGAGACGAAAAAGAACGCC--------------------GAACGGCG----------
     persimilis  GTTTACGTATTTTAGTTATCGAG-TTTATCTTTCGCTT------TCTCGCGCTACTCAGACGAGGAGACGAAAAAGAACGCC--------------------GAACGGCG----------
        virilis  CTTTACGTATTTGAGTTATCAAC-TTTGT-------TT--TGTTTTTCGTATTACACAG---AAGAGACGAAAAA--ACGCCAAACTCAAGGCATCAAGCGACGACGACG----------
     mojavensis  CTTTACGTATTTGAGTTATCAAC-TTTGT--TTTGCTT--TGCTTTTCGCATTACACAG---AAGAGACG-AAAA--ACGCCAAACTCAAGGCATCAAGCGACGACGACG----------
      grimshawi  CATTACGTATTTATGTTATCAACTTTTGT--TTTGTTT--TGTTTTC--TTTTACACAG---AAGAGACGAAAAG--ACGCCAAACTATAGACATCAAGCGACGACGATG----------
        Summary  BBBBBBBMMMMMMMMBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------------------ATCCGGG-CGATGGC---------------TGCGGTGGTGGTGCTAGTGGTGCGGCTGGTG--GAAGAT--------TGGCTCGTTG-----GCT-----
       simulans  --------------------ATCCTGG-CGGTGGC---------------TGCGGTGGTGGTGCTAGTGGTGCGGCTGGTG--GAAGAT--------TGGCTCGTTG-----GCT-----
      sechellia  --------------------ATCCTGG-CGGTGGC---------------TACGGTGGTGATGCTAGTGGTGCGGCTGGTG--GAAGAT--------TGGCTCGTTG-----GCT-----
         yakuba  ATCAGGTTTGATCCTGGCTCATCCTGG-CGGTGGC---------------TGCGGTGGTGGTGCTAGTGGTGCGGCTGGTG--GAAGAG--------TGGCTCGTTG-----GCT-----
         erecta  --------------------ATCCTGG-CGGTGGC---------------TGCGGTGGTGGTGCTAGTGGTGCGGTTGGTG--GAAGAA--------TGGCTCGTTG-----GCT-----
      ananassae  --------------------ATGGTGGTTGGTGGT---------------GGTGCTAGTGGAGCTAGTGGTGCGGCTGGTG--GAAGATTGGCTCGATGGCTCGTTG-----GCT-----
  pseudoobscura  ------------------------------------------------------GTGGTGGC----GTGGTGCTAGTGGCG--GAAGAT--------TGGCT------------------
     persimilis  --------------------GTGGTGG-CG-TGGT---------------GGC-GTGGTGGC----GTGGTGCTAGTGGCG--GAAGAT--------TGGCT------------------
        virilis  --------------------ACGACGA-CGACGACGACGACGATGACATTGACGATGACGATGACGATGACGATTACCGTA--GATGGT--------AGGTGGATAGTAGACGCTAGTGA
     mojavensis  --------------------ATGGCGA-CGATGGC---------------GACGATGGCGATGGCGATGAC----------------AT--------AGGTTGTTAG-GGGTGGTAATGA
      grimshawi  --------------------ATGATGA-CATTGTCGATGACGATGACGATGACGATGACGATTACAATGGCGATGGCGATGACGGTGGT--------TGTTGGATTG-TGGCGCTGGTGA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------------------CGGCTGGG---CGA-----TGGGTGGTTGTCAGCTTAGGAGTTGACTTTGCTGACCGCCTTTAGCAGGTCGTGATTGCTCTTGTCCAGGGCGCTCATCATGC
       simulans  ------------------CGGCTGGG---CGA-----TGGGTTGTTATCAGCTTAAGAGTTGACCTTGCTGACCGCCTTTAGCAGGTCGTGATTGCTCTTGTCTAGGGCGCTCATCATGC
      sechellia  ------------------CGGCTGGG---CGA-----TGGGTTGTTATCAGCTTAAGAGTTGACCTTGCTGACCGCCTTTAGCAGGTCGTGATTGCTCTTGTCCAGGGCGCTCATCATGC
         yakuba  ------------------CGGCTGGG---CGA-----TGGGTGGCTATCAGCTTAGGAGTTGACCTTGCTGACCGCCTTTAGCAGGTCGTGATTGCTCTTGTCCAGGGCGCTCATCATGC
         erecta  ------------------CGGCTGGG---CGA-----TGGGTGGCTATCAGCTTAAGAGTTGACCTTGCTGACCGCCTTTAGCAGGTCGTGGTTGCTCTTGTCCAGGGCGCTCATCATGC
      ananassae  ------------------CGGCTGGGGCTCGGCTTTCCGGGGGGCCAGCTGCTTAGGAGTTAACCTTGCTGACCGCCTTCAGCAGGTCGTGATTGCTCTTGTCCAGGGCACTCATCATGC
  pseudoobscura  ------------------------GG---CGG-----GGG--------CAGCTTACGAGTTGACTTTACTGACAGCCTTCAGCAGATCGTGGTTGCTCTTGTCCAGGGCACTCATCATTC
     persimilis  ------------------------GG---CGG-----GTG--------CAGCTTACGAGTTGACTTTACTGACAGCCTTCAGCAGATCGTGGTTGCTCTTGTCCAGGGCACTCATCATTC
        virilis  TAGTAGCGGTAATGATGATAGTTGAG---AGA-----ATATCCACGCAACATTTAGGAGTTGACTTTACTAACCGCCTTGAGAAGATCGTGATTGTTCTTATCAAGGGCGCTCATCATTC
     mojavensis  CGGTAGCGGTA---ATGATAGTTGAA---GGG-----TGCTCCAGTTGCCGTTTAGGAGTTGACCTTACTGACCGCCTTGAGAAGATCGTGATTGCTCTTGTCAAGGGCGCTCATCATTC
      grimshawi  CAATGACGGTAATGATTGTGGCTGAC---TGA-----CGATCGGCGGCCCATTTAGGAGTTGACCTTACTGACCGCTTTGAGTAGGTCGTGATTGCTCTTGTCGAGGGCGCTCATCATAC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CCAGATTGCCGCCCAAGCCGCCACCGATGCCCGGCCCGATGC---------CGCCCACTCCG------ACGCCCACGCCCATGCCAAGGCCGAGCTTGAGATCGTTTTGACCTACCACCG
       simulans  CTAGATTGCCCCCCAAGCCGCCACCGATGCCCGGCCCGATGC---------CGCCCACACCT------ACGCCCACGCCCATGCCAAGGCCAAGCTTGAGATCGTTTTGACCTACCACCG
      sechellia  CCAGATTGCCCCCCAAGCCGCCACCGATGCCCGGCCCGATGC---------CGCCCACTCCG------ACGCCCACGCCCATGCCAAGGCCAAGCTTGAGATCGTTTTGACCTACCACCG
         yakuba  CCAGGTTGCCCCCCAATCCGCCACCAATGCCCGGCCCGATGC---------CGCCCACTCCG------ACGCCCACGCCCATGCCAAGGCCGAGCTTGAGATCGTTTTGACCTACCACGG
         erecta  CCAGATTGCCCCCCAAGCCGCCACCGATGCCCGGGCCGATGC---------CGCCCACTCCGACGCCCACGCCCACGCCCATGCCAAGGCCGAGCTTGAGATCGTTTTGACCTACCACGG
      ananassae  CCAGGTTGCCACCCAGGCCGCCACCGATGCCGGGGCCAATACCACCGCCCACGCCCACTCCC------ACGCCGACGCCCATTCCCAGGCCGAGCTTGAGATCGTTCTGACCCACCACGG
  pseudoobscura  CTAGGTTACCGCCGAGCCCGCCACCAAGACCGGGACCGATTC---------CG---GCGCCG------ACACCCACGCCCATGCCCAGGCCGAGCTTGAGATCGTTCTGGCCCACGACGG
     persimilis  CTAGGTTACCGCCGAGCCCGCCACCAAGACCGGGACCGATTC---------CG---GCGCCG------ACACCCACGCCCATGCCCAGGCCGAGCTTGAGATCGTTCTGGCCCACGACGG
        virilis  CAAGATTGCCACCAAGGCCAGCGCCAAGACCTGGTCCAATACCAGCTCCGACTCCAACGCCC------ACTCCGACACCCATGCCCAATCCAAGCTTGAGATCGTTTTGACCGACAACGG
     mojavensis  CCAGATTTCCGCCAAGGCCGGCTCCCAGTCCCGGCCCGAGGCCAGACCCAACGCCAACACCG------ACTCCGACGCCCATGCCCAAGCCAAGTTTGAGATCGTTCTGACCGACAACGG
      grimshawi  CCAGATTGCCACCAAGGCCAGCTCCCAGGCCGGGACCAATGCCAGCGCCGACACCGACGCCA------ACGCCAACACCCATGCCCAATCCAAGCTTGAGATCGTTTTGACCGACAACGG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBB

                 
   melanogaster  AGTGGTGCAAGTGGCCTGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGTTGCTGCTGTTGGTGCTGTTGCTGCTGCTGCTGTTGC---------TGCTGCTGTTGCTGTT
       simulans  AGTGGTGCAAGTGGCCTGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGTTGCTGCTGCTGGTGCTGTTGCTGCTGCTGTTGTTGC---------TGCTGCTGTTGCTGTT
      sechellia  AGTGGTGCAAGTGGCCTGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGTTGCTGCTGCTGGTGCTGTTGCTGCTGCTGCTGTTGC---------TGCTGCTGTTGCTGTT
         yakuba  AGTGGTGCAAGTGGCCCGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGCTGCTGCTGCTGGTGCTGTTGCTGCTGCTGCTGTTGC---------TGTTGCTGCTGCTGTT
         erecta  AGTGGTGCAAGTGGCCCGGGTTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGCTGTTGCTGCTGCTGGTGCTGTTGCTGCTGCTGCTGTTGC---------TGCTGCTGCTGCTGTT
      ananassae  AGTGGTGCAAGTGGCCCGGATTGTGCGAGATGATGGAGTGGTGGTCCTGGGGCTGTTGCTGCTGCTGCTGGTGCTGTTGCTGTTGTTGTTGCTGC---------TGCTGTTGTTGCTGTT
  pseudoobscura  AGTGGTGCAAATGGCCTGGATTGTGTGAGATGATCGAGTGGTGGTCCTGCTGCTGTTGCTGCTGCTGCTGGTGCTGCTGTTGCTGTTGCTGCTGC---------TGCTGCTGT-------
     persimilis  AGTGGTGCAAATGGCCTGGATTGTGTGAGATGATCGAGTGGTGGTCCTGCTGCTGTTGCTGCTGCTGCTGGTGCTGCTGTTGCTGTTGCTGCTGC---------TGCTGCTGT-------
        virilis  AGTGGTGCAAGTGGCCCGGATTGTGTGTAATAATCGAATGATGATCCTGCTGCTGTTGTTGCTGTTGCTGGTGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCT
     mojavensis  AGTGGTGCAAGTGCCCCGGATTGTGTGAAATGATCGAGTGATGATCCTGCTGCTGTTGCTGCTGCTGCTGGTGCTGCTGTTGCTGCTGCTGCTGC---------TGTTGCTGCTGCTGTT
      grimshawi  AGTGGTGCAAGTGGCCCGGATTGTGTGTAATGATCGAGTGATGATCTTGTTGCTGCTGTTGCTGGTGCTGCTGTTGTTGCTGTTGCTGTTGCTGC---------TGCTGTTGCTGCTGCT
        Summary  BBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GCTGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATTTTCTCCTGCTCCTCTCGATCGCGTCGCGCCTT-AAAGGTAAATTAAA-----AAC
       simulans  GCTGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATTTTCTCCTGCTCCTCGCGATCGCGTCGCGCCTT-AAAGGTAAATT-----------
      sechellia  GCTGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATTTTCTCCTGCTCCTCGCGATCGCGTCGCGCCTT-AAAGGTAAATTAAA-----AAC
         yakuba  GCTGCTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATCTTCTCCTGCTCCTCGCGATCGCGTCGCGCCTT-AAAGTAATA-AAAA-----AGG
         erecta  GCTGCTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATTTTCTCCTGCTCCTCGCGATCGCGTCGCGCCTT-CATCGAATATAAAA-----AAG
      ananassae  GCTGCTGCTGTTGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGGGCCTTCATCTTCTCCTGCTCCTCGCGATCACGTCGCGCCTTCGAAAAGAAATCAAA-----AA-
  pseudoobscura  --TGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGAGCCTTCATCTTCTCCTGCTCCTCGCGGTCGCGTCGGGCCTT-AAATGGAAAGGAAACACACAAG
     persimilis  --TGCTGC---TGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGAGCCTTCATCTTCTCCTGCTCCTCGCGGTCGCGTCGGGCCTT-AAATGGAAACGAAA-ACACAAG
        virilis  GCTGTTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATAGTCTCCTGAGCCTTCATTTTCTCTTGTTCCTCTCGGTCGCGGCGTGCCTA-AAACGTGAATATGA-----AAA
     mojavensis  GCTGTTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATAGTTTCCTGAGCCTTCATTTTCTCCTGCTCCTCGCGATCACGGCGTGCCTG-CAATGTGGAGATGA-----CGA
      grimshawi  GCTGTTGC---TGCTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCCTGAGCCTTCATTTTCTCTTGCTCCTCACGATCGCGTCGTGCCTA-ACAAAGGAACATGA-----AAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----------GGAAAGCAAGT------------------------------------T-------AGTT----------------------------------------AAGAGTTTAAG
       simulans  -------------AGTTAAGT------------------------------------T-------AGTT----------------------------------------AAGAGCTTAAG
      sechellia  ----------GGAAAGCAAGT------------------------------------T-------AGTT----------------------------------------AAGAGCTTAA-
         yakuba  ----------GGAAACCAAGT------------------------------------T-------AGTA----------------------------------------AAGAGTTAAGA
         erecta  ----------GGAACGCAAGT------------------------------------TAGTGGGGAGTG----------------------------------------AGGAGTTGAGG
      ananassae  ------------AACACCAAT------------------------------------C-------AGTT-------------------------------------------AGTTTAAT
  pseudoobscura  ----------GAAAAGGGTTT------------------------------------T-------AGTTTTCCGCTCGGAAGTCG--------------TTGCC-AAATGAGAGCTCTGG
     persimilis  ----------GAAAAGGGTTT------------------------------------T-------AGCTTTCCGCTCGAAGGTCGGTCTCTAGCC--CACTGCCAAAATGAGAGCTCTGG
        virilis  GAAGACGGGAGAAATGCATATTAGGCAACTATCTAGA--------------------C-------ACAT----------TGCTGGCGACCTATTTAAAAAGTCCGTCGCAATCGTT----
     mojavensis  TGAGGCGCATTAAAGG-ATAT------ACTATAT-----------------------C-------AATT----------TAATAGGAGCCAATAT--------CGCGATGATCGATCAAG
      grimshawi  -GATTCAAGACAAAAGCACATTAAACTCCTGTCCACAGTAGGTGTTCTTCAATTCCTC-------AATT----------CTCTGATGACTCATTTTAAGATGCGATAGCTATCGCT----
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GT--------GCTGCGG---AAGGACCAGCTCACCTGTTCATTTATTTCCTTGACGGCTCGTAACTCCTTCTTCAGCTTCATGCGACGGTTCTGAAACCAGATCTTGATCTGTCGCTCGG
       simulans  GT--------GCTGCGG---CAGGATCAGCTCACCTGTTCATTTATTTCCTTGACGGCTCGCAACTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTGATCTGTCGCTCGG
      sechellia  GT--------GCTGCGG---CAGGATCAGCTCACCTGTTCATTTATTTCCTTGACGGCTCGCAACTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTGATCTGTCGCTCGG
         yakuba  GTTAGGT--CGCTTTGC---GAGGACCAACTCACCTGTTCATTTATCTCCTTGACGGCTCGCAACTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTGATCTGCCGCTCGG
         erecta  GTCAAGC--CGCCCCGG---GAGGACCAACTCACCTGTTCATTTATCTCCTTGACGGCTCGCAACTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTGATCTGCCGCTCGG
      ananassae  TTTATCCAAATACCTGG---AAGGGCGGACTCACCTGTTCGTTTATTTCCTTGACGGCGCGCAGCTCCTTCTTCAGCTTCATGCGCCGGTTCTGGAACCAGATCTTTATCTGTCGCTCGG
  pseudoobscura  AG--------AATCCTG---GGAGATCGACTCACCTGCTCGTTGATCTCCTTGACGGCGCGCAGCTCTTTCTTCAACTTCATGCGACGGTTCTGGAACCAGATCTTGATCTGGCGCTCGG
     persimilis  AG--------AATCCTG---GGGGATCGACTCACCTGCTCGTTGATCTCCTTGACAGCGCGCAGCTCTTTCTTCAACTTCATGCGACGGTTCTGGAACCAGATCTTGATCTGGCGCTCGG
        virilis  TC--------GACATGC---TTCCGATAACTTACCTGTTCGTTGATCTCTTTGACCGCGCGCAGCTCCTTCTTTAATTTCATGCGTCGATTCTGAAACCAGATCTTGATCTGTCGCTCGG
     mojavensis  TC--------GACTTGC---TCCGGTCAACTTACCTGTTCGTTAATCTCTTTGACAGCGCGCAGCTGTTTTTTGCTTTTCATGCGACGATTCTGGAACCAGATTTTCACTTGTCTTTCGG
      grimshawi  CC--------GTTATGCAAATCAGGTCAACTTACCTGTTCGTTGATCTCTTTGACCGCACGCAACTCCTTCTTCAACTTCATGCGCCGGTTCTGGAACCAGATTTTGATCTGGCGCTCAG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TCAGGCAGAGGGCATGTGCGATCTCGATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGGCGACCGCGCCTTC
       simulans  TCAGGCAGAGGGCATGTGCGATCTCGATACGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGACGACCGCGCCTTC
      sechellia  TCAGGCAGAGGGCATGTGCGATCTCGATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGCCGACCGCGCCTTC
         yakuba  TCAGGCAGAGGGCGTGTGCTATCTCAATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGGCGACCGCGCCTTC
         erecta  TCAGGCAGAGGGCATGTGCGATCTCAATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTCCAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGGCGACCGCGCCTTC
      ananassae  TCAGGCAGAGAGCGTGGGCTATCTCGATGCGCCGCCGCCGAGTCAAGTAGTGGTTGAAGTGGAACTCCTTCTCCAGCTCGAGGGTCTGAAAGCGAGTGTAGGTCTGGCGGCCGCGTCTTC
  pseudoobscura  TCAGGCAGAGCGCGTGGGCGATCTCGATGCGGCGTCGCCGCGTCAAGTAGTGGTTGAAGTGGAACTCCTTCTCGAGCTCCAGCGTCTGGAAGCGCGTGTAGGTCTGCCTGCCGCGGCGGC
     persimilis  TCAGGCAGAGCGCGTGGGCGATCTCGATGCGGCGTCGCCGCGTCAAGTAGTGGTTGAAGTGAAACTCCTTCTCGAGCTCCAGCGTCTGGAAGCGCGTGTAGGTCTGCCTGCCGCGGCGGC
        virilis  TTAGGCAGAGCGCGTGTGCAATCTCTATGCGTCGTCGCCGCGTCAAGTAGTGGTTGAAGTGGAACTCTTTTTCGAGCTCCAGCGTCTGGAAGCGAGTATAAGTCTGGCGGCCGCGACGTC
     mojavensis  TAAGCTGCAGACGTTGAGAGATCCCGATGCGACGAGGTCTACCCAGATATTTGTTCTCATTGAACTCGCGCTCCAGCTCGAGCAGTTGGTGACTTGTGAA-----GGCGG-TGCGAGAGC
      grimshawi  TCAGGCAGAGGGCGTGCGCAATCTCTATGCGTCGTCGCCGCGTCAAGTAGTGGTTGAAGTGGAACTCCTTCTCCAGCTCCAATGTCTGGAAGCGGGTGTAAGTCTGGCGGCCGCGGCGAC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GTGGACAGCCGTTGGGGCCT----GCGG---AGGAGAA--AACGGAGAAAGTTGCGTCAG--ATGTTTGC------------AACGATGTT--------------TAAGAAGATGTTTT-
       simulans  GGGGACAACCGTTGGGGCCT----GAGG---AGAAGAA--AACGGAGAAAGTCACGTCAG--ATGCTTGA------------AATGATGTT--------------TAAGAAGATGTTTT-
      sechellia  GGGGACAACCGTTGGGGCCT----GAGG---AGGAGAA--AACGGAGAAAGTCACGTCAG--ATGCTTGA------------AACTATGTT--------------TAAGAAGATGTTTT-
         yakuba  GGGGACAGCCGTTGGGGCCT----GCGG---AGGAGAA--AACGGAGAAAGTCGCGTCAG--ATGGTGGC------------AACGATGTT--------------TAAGAAGATGTTTT-
         erecta  GGGGACAGCCGTTGGGGCCT----GCGG---AGGAGAA--AACGGAGAAAGTCGCGTCAG--ATGCTTGC------------AACGATGTT--------------TAAGAAGACGCTTT-
      ananassae  TGGGGCATCCGTTGGGGCCT----GCAA---AAAGAAACGAGAGGAGAAAGTCACGTCAG--ATGC------------------CGTCGTT--------------GATGATGATGTTGT-
  pseudoobscura  GAGGGCATCCGTTGGGGCCTGTGGGCGG---GAGAAAG--AACAAAGAAAGTCACGTCAG--TCACGCACTCA---------CACACTGTCTGGCTGTGCATTGGTATGATAATGTTGTT
     persimilis  GAGGGCATCCGTTGGGGCCTGTGGGCGG---GAGAAAG--AACAAAGAAAGTCACGTCAG--TCACGCACT-----------CACACTGTCTGGCTGTGCATTGGTATGATAATGTTGTT
        virilis  GCGGGCATCCGTTGGGCCCT----GCAAACGAGAGGAG--AACAAAGAAATTCGCGTTAGTCACGATTGTCACGCACACAGCTCAAGTGTT---------------GCTATAGTGCTGG-
     mojavensis  GCTTGCACTTGGAGGCGACT----GGAGGGCAGTGGAA--CTCGGAGGAAGTCGCGTTAGTCACGATTG-------------TCAAATGTT---------------------GTGCTAC-
      grimshawi  GTGGGCATCCGTTGGGCCCT----GCAAACCACAACAA--AAAAAATAAAGCAGCGTTAGTCACGATTGTCACGCACACAGCTCAAGTGGTCGGTGC--------CGGTCTGATTCTGG-
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------------TGCC--TTTTTCGGCA--------ACGCCT---AATGAGCTGCTAAGACGGTGTCAGACGGTCGAAAATGGTACTTTGGCCAGCT----------GCAA---CAC
       simulans  ---------------TGCC--TTTTTCGGCA--------ACGCCT---AATGAGCTGCTAAGGCGGTGTCAGACGGTCGAAAATGGTACTTTGGCCAGCT----------GCAA---CAC
      sechellia  ---------------TGCC--TTTTTCGGCA--------ACGCCT---AATGAGCTGCTAAGGCGGTGTCAGACGGTCGAAAATGGTACTTTGTCCAGCT----------GCAA---CAC
         yakuba  ---------------GGCC--TCTTTCGCCA--------GCGCCT---AATGACCTGCTAAGACGGTGTCAGACGGTCGCAAATGGTACTTTGGCCAGCT----------GCAA---CAC
         erecta  ---------------GGCC--TTTTTCGCCA--------ACGCCT---AATGACCTGCTGAGACGGTGTCGGACGGTCGAAAATGGCACTTGGGCCAGCT----------GCAG---CAC
      ananassae  ---------------TGCCGTTTTTTTGGCA--------GCGCTT---AATGAGCTGCAAAGACACTGGCAGACAGTCGAAAATGGAACTCTGGCTCGCCTTAATGGCCAGCAA---CAC
  pseudoobscura  CGGCTTCTTTGGGGCTGCC--TTTTCTGGCA--------ACTCTT---AACGAGTCGC--AGGCGCTGTCAGACAGGCGGGAATGGAACTCTGCCTCGCCGTAACGGG------------
     persimilis  CGGCTTCTTTGGGGCTGCC--TTTTCTGGCA--------ACTCTT---AACGAGTCGC--AGACGCTGTCAGACAGGCGGGAATGGAACTCTGCCTCGGCGTAACGGGCTGCAA---CAC
        virilis  ---------------TTCC--GTTTTTTGAAA-------ACTCGT---AACGAGCTGCGAAGATGCTGTCAGACTGCCAAAAACGGATTTTCGCCTCGCCTTA--TGGTTGCAA---CAC
     mojavensis  ---------------TCGA--ATACGCCAAAACAGTGAGACACGTGTGAGCGAGGCGT---GGCTCTGTGGGGCTGGCGA---------TGCG-------------GGGAACAA---CAG
      grimshawi  ---------------TTCT--GTTTTTGGAC--------ACTCTT---AACGAGCTGCGAAGAAGATGTCGCCCGGCCACAAATGGAATCTCGCCTTATGTGAACGGGTTTCAGCCTCAC
        Summary  BBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATGTCAGGCGTCGACAC--ATGATTTG---------------TGCTGGGGTATGGGGGT-----TTGGAGGT------------------TGGGGG-----------------CGTACAT
       simulans  ATGTCAGGCGTCGACAC--ATGATTTG---------------TGCTGGGGTATGGGGGC-----TTGGGG--------------------------------------------GTACTT
      sechellia  ATGTCAGGCGTCGACAC--ATGATTTG---------------TGCTGGGGTATGGGGGC-----TTGGGG--------------------------------------------GTACTT
         yakuba  ATGTCAGGCGTCGACAC--ATGATTTG---------------TGCTATGGGATGGGGGT-----TGGGGA--------------------TGGAGG-----------------GGTACTT
         erecta  ATGTCAGCCGTCGACAC--ATGATTTG---------------TGCTGTGGGATGGGGGT-----TTGGGGGT-----------------TTGGGAGTTCGGT-----------GGTTCTG
      ananassae  ATGTCAGGCGTCGCCCC--ATGATTTG---------------TGGCTGGAGTTGGGGGT-----CTGTGGATGCCG-----------GATTAGGAGAGTGGGAAGAGGGAAGAGACACT-
  pseudoobscura  ---------------------------------------------CTGGGTCTGTGGAT--------GGGATCCGG-----------GATGGGGAG------------------------
     persimilis  ATGTCACGCGTCGCCGC--ATGATTTT---------------TGCCTGGGTCTGTGGATGGGGATCGGGGATCCGG-----------GATGGGGAG------------------------
        virilis  ATGT--------------------------------------------------------------------------------------------------------------------
     mojavensis  ATTT---------------CTGATTTG------GATATTGCTCGCTTCGCGCCAAGAAG-----TCGCGAAAGGGTGGTGGGCGCGAGAGCAGG--------------------GGGCAT
      grimshawi  AT--CAGGCAATAAGGCGCTTAATTTGTGTGCAGCCATTAGCCACTTTGAACTCAAAAG-----CT------------------------CAGGTA-----------------AGAACTT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTCTGAGCTGCAC-------TGCGAATG------------T-CTGACTGCAAATTAC-----GGGAA------------------------------AA-----------ACAAACAGAT
       simulans  TTCTGAGCTGCAC-------TGCGAATG------------T-CTGACTGCAAATTAC-----GAGAA------------------------------AA-----------ACAAACAGAT
      sechellia  TTCTGAGCTGCAC-------TGCGAATG------------T-CTGACTGCAAATTAC-----GAGAA------------------------------AA-----------ACTAACAGAT
         yakuba  TTGGGAGCTGCAC-------TGCGAATG------------T-CTGACTGCAAATTAC-----GAGAA------------------------------AA-----------ACAAACAGAA
         erecta  TTCGGAGCTACAC-------TGCGAATG------------T-GGGACTGCAAATTGC-----GAGAA------------------------------AA-----------ACAAACAGAT
      ananassae  ------GGTGCAC-------TGCGAATG------------T-CTGGCTGCAAATTAC-----GAGCC------------------------------AA-----------ACAAACAG-T
  pseudoobscura  TTGGGAGCGGAGAGAG----AGAGAGTG------------CACTGGCTGGAAATCAA-----GAGCC------------------------------CA-----------ACAAACAGTT
     persimilis  TTGGGAGTTGGGAGCGGAGAGGAGATTG------------CACTGGCTGGAAATTAA-----GAGCC------------------------------AA-----------GCAAACAGTT
        virilis  --------TGCAC-------TGCGAATG--------------TCTGCTGCAAATTAC-----GAGCA------------------------------AA-----------ATAAATAATT
     mojavensis  GGCCATGCTGCAC-------AGCGAATA-----------TC-TCTGCTGTAAATGAC-----GAGCACAAA------------------------CAAA-----------ATAAATAATT
      grimshawi  TGCCAGATTGCAG-------CGCTAAAGAAAAAGGGGAAAT-GCGATCGAAAGCGATAACGGGAACAGAAAGTGAGTGCCCTGCATCATCTGCTGCGAATTACGAGGAAAATAAACAGTT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGT-TTTA-----------ACAGAGAGAGAGAGAGAAGGGAGTGATCTGATGCTA----------GAGCTGACGTCAGCA----------------------------GCCGG-CGCCCC
       simulans  TGT-TTCA-----------------AAAGAGCGAGAAGGGAGTGATCTGATGCTA----------GACCTGACGTCAGCA----------------------------GCCGG-CGCCCC
      sechellia  TGT-TTCA-----------------AAAGAGCGAGAAGGGAGTGATCTGATGCTA----------GACCTGACGTCAGCA----------------------------GCCGG-AGCCCC
         yakuba  TGT-TGCA-----------------AAAGAGCAAGGAGGGAGTGATCTGATGCTA----------GACCTGACGTCAGCA----------------------------GCAGG-CGCCCC
         erecta  TGT-TCCA-----------------AAAGAGCGAGAAGGGAGTGATCTGATGCTA----------GACCTGACGTCAGCA----------------------------GCCGG-CGCCCC
      ananassae  TTT-TCCA-----------GCCACCAGTCACCAGCTACCCAGCAACCTG--GCTGGGAAAAGGGTGAGTTGACGTAAGCA----------------------------GGCGGTCGCCCC
  pseudoobscura  TGT-CTAACAATCATGCTGGAACACGGACTGGAAGGGTGGAGAGATCTGACGTCA----------GCGACAGAG-CAGCA----------------------------GCAGG-CGCCCC
     persimilis  TGT-CTAACAATCATGCTGGAACACGGACTGGAAGGGTGGAGAGATCTGACGTCA----------GCGACAGAG-CAGCA----------------------------GCAGG-CGCCCC
        virilis  TTT-CTAA---------------CCAGGC------------CAGCTCTGACGTCA---------------ACCGTCAACTGACAGTCGACAGCGCCACACAGCGCAAGGCGAATCGCGGC
     mojavensis  TCTGCTAT---------------CCAGGC------------CAGCTCTGACGTCA------------------GTCCACT----------------------------GCGAATCGCGGC
      grimshawi  CTC-CTAA---------------CCGGGC---------GAACGTCTCTTACGTCA------------------GTCGACA-----------GCGCCACACAGT-----GCGAGGCGCGGC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCAACTGCGGATTGGCATCGCACGCAGTGCGTGAAAGGGTGAAGCTACCAA
       simulans  AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCCACTGCGGATTGGCATCGCACGCAGTGCGTGGAAGGGTGAAGCTACCAA
      sechellia  AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCCACTGCGGATTGGCATCGCACGCAGTGCGTGGAAGGGTGAAGCTACCAA
         yakuba  AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCCGCTGCGGATTGGCATCGCACGCAGTGCGTGGAAGGGTGAAGCTACCAA
         erecta  AGGACGTCAACACCC-CGGG-----------GTCCATTGCGGA--------------------CCTGATTCCGCTGCGGATTGGCATCGCACGCAGTGCGTGGAAGGGTGAAGCTGCCAA
      ananassae  AGGACACCGACTCCC-CGGG-----------GTCCATTCCGGA--------------------CCTGATTCCGCTGTGGAATCGCATCTCACACAGTGCATGGAAGGGTGAAGCA-----
  pseudoobscura  AGGACTTGGGCTCCC-CGGGAAGCA------GGCTGACCCAGC--------------------CCTGATTCCGCCTTGGATT------GCACGCAGTGCATGGAAGGGTGAAG-------
     persimilis  AGGACTTGGGCTCCC-CGGGAAGCA------GGCTGACCCTGC--------------------GCTGATTCCGCCTTGGATT------GCACGCAGTGCATGGAAGGGTGAAG-------
        virilis  AGGACATCAGCTCCC-TGGGGGTCGGCTGACGGCTGGCCGGGT--------------------TCTGATTCCGATTTCAATGGCGATTGCACGGCATGTA---AAGGGTGAA--------
     mojavensis  AGGACATCAGCTCCCTTGGGGGTTGGCTGACGGCTAGCCGGGTTCTGGTTCTGATTCGGATTCTCTGATTCCGATTCCAATGGCGATTGCACGGCATGTA---AAGGGTGAAGCGGCAGC
      grimshawi  AGGACATTATCTCCC-TGGGGGTCGATTGTCGGCTGGCCGGGC--------------------ACTGATTC------------CGATTGCATGGCATGTA---AAGGGTGAA--------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  T---ACCGACACCGACTCGCCCAGCGGCAGGTCTCGCCCTGGTGGCCAGCAG------CCAGCGCTTTT----------CCCCGATT--TTCCC---CGCATTCCTTTCTCTACT---TT
       simulans  T---ACCGACACCGACTCGCCCAGCGGCAGGTCTCGCCCTGGTGGCCAGCAG------CCAGCGCTTTT----------CCCCGATT--TTCCC---CGCATTCCTTTCTCTACT---TT
      sechellia  T---ACCGACACCGACTCGCCCAGCGGCAGGTCTCGCCCTGGTGGCCAGCAG------CCAGCGCTTTT----------CCCCGATT--TTTCC---CGCATTCCTTTCTCTACT---TT
         yakuba  TACCACCGACACCGACTCACCCAGCGGCAGGTCTCGCCCTGGTGGCCGGCAG------CCAGCGCTTTT----------CGTCGATT--TTCCC---CGCATTCCTTTCCCTACT---TT
         erecta  T---ACCGACACCGACTCGCCCAGCGGCAGGTCTCGCCCTGGTGGCCAGCAG------ACAGCGCTTTT----------CTTCGATT--TTCCC---CGCATTCCTTTCCCTACT---TT
      ananassae  ----ACCGGCACCGATTCGCTCAGCAGCAGGTCTCGCCCTGGTGGC-------------CAGCGCTTTT----------CCTCAATT--TTTCCCTGCACATTCCTTTCTCTAGA---TA
  pseudoobscura  ----AAACACACCGGCTCCCGCTGCGGCAGGTCTCGCCGCGGTGCCCAGCAGTATGGCCCTGTGTCTTTG---------ACTCGGTT--TTCCG-----------TTTTCCTACG---CT
     persimilis  ----AAACACACCGGCTCCCGCTGCGGCAGGTCTCGCCGCGGTGCCCAGCAGTATGGCCCTGTGTTTTTG---------ACTCGGTT--TTCCG-----------TTTTCCTACG---CT
        virilis  ------CGAAAACAGCTTTCGCAGTAGTAGCTCCCGCTGGGATGA--GAAACGTTTTCCAAGCATTTTTGTCTTACTTTTCTCGATT--TTCTT-----------------TGTA---GT
     mojavensis  AGA-ACCAGAAGCAGCTTTTGTAGCACCGACTCCTGCTGGGTTGAGCGAAACGTTTTCCATGCATTTCTG---------TCTCGATT--TTCTT-----------------TGTT---GC
      grimshawi  -----CCAGGGGCGAAATTCACAACAGTAGCTCCCGCTGGGATGAG-AAAATGTTTTCCAAGCAGTTTTGTCTTGCGA-TTTCGATTTATTTTT-----------------TGTTTTGAC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTTGT---------CTAGTTTTTTGTTTC-----TTATTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACGGTGTGCGGAGATGCG--CTCGG--------------
       simulans  CTTGT---------CTCGTTTTTTGTTTC-----TTATTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACGGTGTGCGGAGATGCG--CTCGG--------------
      sechellia  CTTGT---------CTCGTTTTTTGTTTC-----TTATTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACGGTGTGCGGAGATGCG--CTCGG--------------
         yakuba  CTTGT---------CTAGTTTTTTGTTTCTCTTTTTTTTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACT--GTGCGGAGATGCG--CTCGG--------------
         erecta  CTTGT---------CTCATTTTTTGTTTC------TTTTT-TTAGCAATTTTCCATGCTACCTGTGCGAATTTTTTGCGCGACG--GTGCGGAGATGCG--CTCGG--------------
      ananassae  TTT---------------TTTTGTACACT-----TTTTTT-TTAGCAATTTTCCTCGCTACCTGTGTGAATTTTTTGCGCGGCA--GTGCGAAGCTGCG--CCTGG--------------
  pseudoobscura  CCTATGCCAGGCGATTCTTGTGTTATTTT-----CTTTTT-TTACCGATTTTCCACGCTACCTGTGCGAATTTTTTGCGCGACG--G---------------------------------
     persimilis  CCTATGCCAGGCGATTCTTGTGTTATTTT-----C-TTTT-TTACCGATTTTCCACGCTACCTGTGCGAATTTTTTGCGCGACG--G---------------------------------
        virilis  TTTCT---------CTATTTTTCTTCTTT-----TTTTTTTTTACCAATATTTCACGCTACCTGTGTGAATTTTTTGCGCGACG--GTGCGTGGATGATACAGCGA--------------
     mojavensis  TCTGT---------ATATGACTTTTTTTT-----TGTGTT-------GTGCTGCACGCTACCTGTGCGAATTTTTTACGCGATA--GTGCGTGGATGATGCAGCAAAGGGAGATGCAATA
      grimshawi  TTTTT---------TTATTTTTATTTTTC-----TTTTTT-TTAGTAATTTTTCACGCTACCTGTGCGAATTTTTTGCTTGACG--GTGCGTGGCTGATGCAGCAGAGAGAAAGGCAAC-
        Summary  BBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBMMMMMMMMBBBBBMMMMMMMMBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGCC
       simulans  ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGCC
      sechellia  ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGTC
         yakuba  ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGCC
         erecta  ----------AAT-GGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTCCCAGCCTAACAGCCTCTCACTT----ATACCCGCTTGCC
      ananassae  ----------AATGGGCACAGGCTCCGTGTTTATGTTACGGAAATC-AAAAATTCGCTATCTACAAATTGCTGTCCCAGTGCCAGCC-----GCCTCTCACTT----TTACCCGCTTGCC
  pseudoobscura  --------------TGCACAGGCTCCGTGTTTATGTTTCGGAAATC-AAAATTTCGCTATCTACAAATTGCTGCCGCATCCTCTGGATCAGAGCCTCTCACTTTGGGTCGACCGCTTGCC
     persimilis  --------------TGCACAGGCTCCGTGTTTATGTTTCGGAAATC-AAAATTTCGCTATCTACAAATTGCTGCCGCATCCTCTGGATCAGAGCCTCTCACTTTGGGTCGACCGCTTGCC
        virilis  -------GGCAATGGGAATGGGCTTCGTGTTTATGTTTCGGAAATC-AAAATTTCGCTATCTGCAAATTGCGGGC-CAGGG---------------ATCACTT-----TTCCCGCTTGCT
     mojavensis  GAAAAGCAGAAATGGGAATGCGTTTCGTGTTTATGTTTCGCAAATCAAAAATTTAGCTATCTGCAAATTGCATGCTCAGGC---------------ATCACTT-----TTCCCGCTTGCT
      grimshawi  -------TGAAATGGGAATGTGCTTCGTGTTTATGTTTCGGAAATC-AAAATTTCGCTATCTGCAAATTGCAGGC-CACGG---------------CTCACTT-----TTGCCGCTTGCT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBRRRRRRRRBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBM

                 
   melanogaster  GTTTTATGG------CTTTCA---TGTC--------TCTTCTTTTTTGC--ACTGCTGCCT----TTGTGCCGAG--TTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
       simulans  GTTTTATGG------CTTTCA---TGTC--------TCTTCTTTTTTGC--ACTGCTGCCT----TTGTGCCGAG--TTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
      sechellia  GTTTTATGG------CTTTCA---TGTC--------TCTTCTTTTTTGC--ACTGCTGCCT----TTGTGCCGAG--TTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
         yakuba  GTTTTATGG------CTTTCT---TGTC--------TCTTCTTTTTTGC--ACTGCTGCCT----TTGTGCCGAG-TTTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
         erecta  GTTTTATGG------CTTTCT---TGTC--------TCTTC-TTTTTGC--ACTGCCGCCT----TTGTGCCGAG-TTTTTCTGGCAAAAGGTTTTCATGTCAACGGCA-ATTTTTTATG
      ananassae  GTTTTATGG------TTTTTTTTCTTTT--------TCTTCCTCCTTGCCGCTTGCCGCCTGCCATTGTGCGGAG-TTTTTCTCCTAAAAGG-TTTCATGTCAACGGCA-ATTTTTTATG
  pseudoobscura  GTTTTATGG------CTTTTA---TGTCTCTCTGTGCCTCTCTCTCTCT--GTTCTTG-CT----TTGTGTCGAGTTTTTTCCTGTAAAATGTTTTCGTGTCGGCAGCA-ATTTTTTATG
     persimilis  GTTTTATGG------CTTTTA---TGTC-----GTGCCTCTCTCTCTGT---TTTTTG-CT----TTGTGTCGAG-TTTTTCCTGTAAAAGGTTTTCGTGTCGGCAGCA-ATTTTTTATG
        virilis  GTTTTATGACAGCACCTTTCG---TTTT--------GCTTTTTTATTTT--CCTT---ATT----TT---------TCTTTTTTTTTAAAGGTTTTCACGTCAGCGGCAAATTTTTTATG
     mojavensis  GTTTTACGACAGCACCTTTCG---ATCT--------GTTGTTTT---------------CG----TT---------TCTTTTTTATAAAAGGTTTTTACGTCAGCGGCATATTTTTTATG
      grimshawi  GTTTTATGACAGCACCTATCG---TTTT--------TTCCTTTTATTTT--ATTT-TGAGT----TT---------GTTTTTTCGTGAAAGGTTTTCACGTCAGCGGCACATTTTTTATG
        Summary  MMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMRRRRRRRRMMMMMMMMBBBBBBBBBBMMMMMMMMBBB

                 
   melanogaster  GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--TGTTCAAGC---AGACAAAAT---AAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAA-TT--GTATATGT-------
       simulans  GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--CGCTCAAGC---AGACAAAAT---AAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TT--GTAAATCT-------
      sechellia  GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--CGCTCAAGC---AGACAAAAT--AAAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TT--GTAAATCT-------
         yakuba  GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--CGTTCAAGC---AGACAAAAT---AAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TT--GCAAATCT-------
         erecta  GTTT-GCAAGTTGCGACTTTCCAACGGTAAC--CGTTGAAGC---AGACGAAAT---AAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TT--GTAAATTT-------
      ananassae  GTTT-GCAAGTTGCGACTTTCCAACATCA--------CAAGCCCGAGACAATGTTCGAAAAAAGGGACAATTTTTACGTAATATTATGAAAGGTGCAGAT-TTTGGGAAATCT-------
  pseudoobscura  GTTT-TCAAGTTGCGACTTTCCCACTACAACAACATTCGAGC---CGA----AT---AAAAAAAGGACAATTTTTGCGTAATACTGTGAAAGGTGCATATCTT--GCGATTCTCCGTTGC
     persimilis  GTTT-TCAAGTTGCGACTTTCCCACTACAACAACATTCGAAC---CGA----AT---AAAAAAAGGACAATTTTTGCGTAATACTGTGAAAGGTGCATCTCTT--GCGATTCCTCGTTGC
        virilis  GTTGGGCAAGTTGCTAGTTTCCGACAACAAT--------------G------CG--------AGGGACAATTTTTGCGTAATATTTTGAAAGGTGCATTT-GT--ATGGAGTT-------
     mojavensis  GTTGGGCAAGTTGAGAAGTGCCGGCAACAAT--------------G------CT--------AGGGACAGATTTTGCGTAATATTTTGAAAGGTGCATTT-GT--GCAGAGTT-------
      grimshawi  GTTTGGCAAGTTGCGAGTTTGCAACAACAAC--------------GGAC---AA--------AGGGACATCTTTTGCGTAATATTTTGAAAGGTGCATTC-GT--CCACATTT-------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBMMMMMMMMRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -TGCTCGGCTGCAGTTGTAAATCATTGTGATTTTTTCTAGTTTCCGCTGCATTTTTTATGAGACTGAACAGT-TGGCAAAATATT-TACGGG-CGAATAAGGCCGTGACATTTGA--A--
       simulans  -TGCTCGGCTGCAGTTGTAAATCATTGGGATTTTTTCTAGTTTCCGCTGCATTTTTTATGAGACTGAACAGT-TGGCAAAATATT-TACGGG-CGAATAAGGCCGTGACATTTGA--A--
      sechellia  -TGCTCGGCTGCAGTTGTAAATCATTGGGATTTTTTCTAGTTTCCGCTGCATTTTTTATGAGACTGAATAGT-TGGCAAAATATT-TACGGG-CGAATAAGGCCGTGACATTTGA--A--
         yakuba  -TCCTCGGCTGCAGTTGTAAATCATTGGGATTTTGTCTAGTTTCCGCTGCATTTTTTATGAGACTGAACAGT-TGGCAAAATATT-TACGGA-CGCATGAGGCCGTGACATTTGA--A--
         erecta  -TGCTCGGCTGCAGTTGTAAATCACTGGGATTTTGTCTAGTTTCCGCTGCATTTTTTATGAGACTTAACAGT-TGGCAAAATATT-TACGGA-CGCATGAGGCCGTGACATTTGA--A--
      ananassae  -TTCTCGGCTGTGGCTGTAAATCAT---------------CTTCAGTTGCATTTTTTATGAGATTGGGCAGT-TGGCAAAATATT-TACGGC-CCGATGAGCCCGTGACAGTCAA--A--
  pseudoobscura  GTTCTCAGTTGCAGCTGTAAATCATTTCGGGTTTTCAAA----CCTATGCATTTTTTATGATATTCGGCAGT-TGGCAAAATATT-GACGGATCGATTGAAGCCGTGACA--TGA--ACG
     persimilis  ATTTTCAGTTGCAGCTGTAAATCATTTCGGGTTTTCAAA----CCTATGCATTTTTTATGATATTCGGCAGT-TGGCAAAATATT-GACGGATCGATTGAAGCCGTGACA--TGA--ACG
        virilis  -----CCACTGGAGTTGTAAATCATTTACTTT---------CCTCAGAATGGGTTTTA------TAAACGTTATGACCAACAATT-TACAAG-CG-------------------------
     mojavensis  -----CCGCTGTAGTTGTAGGCCATTTGTGGTT-----AGATTTCGATTTGCTTTTTATTTTATTGGACAAAGCAAGCGAAAACTGTTCAAA-TATTTTAAATTG-GACGTTTACTTA--
      grimshawi  -----CCACATGAGTTGTAAATCA-TTGTACTTTATGGAAATCTAAGGAGGTCTATTA----------------------ATATT-TGC-------------------------------
        Summary  BBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBRRRRRRRRMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------TTTACCTCAACCGATAAGA-AGTATTGGTGATTCACTGG--TGGAAAATACAAAAAACCCCAGCTCCTGTTTTTCGGATGAACGGAA-CAGTGATGTTAAG----AAAAAAATT
       simulans  ------TTTACCTCACCCGATAAGA-AGTATTGGTGATTCACTGG--TGAAAACTTAAAAAACCCCTAGCTCCTGTTTTTCTGATGAACAGAA-CAATGATGTTAAG----ATAAAAATG
      sechellia  ------TTTACCTCAACCGATAAGA-AGTATTGGTGATTCACTGG--TGAAAACTCAAAAAACCCCTAGCTCCTGTTTTTCTGATGAACAGAA-CAATGATGTTAAG----ATAAAAATG
         yakuba  ------TTTACCTCAACCGATAAGA-AGTATCGATGATTCACTGG--TGGAA---------------------TCATCTTCTAGTGTACAAAA-TAGTGCTGTTACGCCTTAAAAAAATA
         erecta  ------TTTACCTCAGCCGATAACA-AGTATTGGTGATTCACTGG--TGGAAAAT--AAAAAACCCTAGCTCCTGTTTTTCTGATGTACAAGA-CAGTGTTGTTACG----AAAGAAATT
      ananassae  ------TTTACCTGAACTGATAAGCTTGTTGAGGTGAGTCATTAG----------------------------GATTTCTCTTTTTAACA----------TTTTAAA----GT-------
  pseudoobscura  GGCAGCTCTACCTGTGCTGTTCATC-AGCTCTGGTGAGTCATTAC--CAGATAAGACAA-------------------------------------------------------------
     persimilis  GGCAGCTCTACCTGTGCTGTTTACC-AGCTCTGGTGAGTCATTCC--CAGATAAGACAA-------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------GCCACGTTAATAGTTAGCC-AGTTATGTTTATCTGCTATAATAAAAATTTAAG------------------------AAATACAAAATTAGTATTCCCCTT----CTATTAATT
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TATATGTATGG-----ACGCC----------------------------------------------------GA--------------------A-TGGTCCCAAATGTCTTA---AAA
       simulans  TATATGTATTGCATTTACACCTT------------------------AATAAAA------TATATTT-----AGAAATTGTTCTAG---CATGTCA-CGGACCCAAATGTTTTA---AAA
      sechellia  TATATGTATTGCATTTACGCCTT------------------------AATAAAA------TGTATTT-----AGAAATTGTTCTAG---CATGTCA-CGGACCCAAATGTTTTA---AAA
         yakuba  AAT--------AAATTAC-----------------------------AAAAGAA------AATAGTTACATAAGAACTAGTTACAGGTTTCTGGCA-CTTGCTCCAATG-ATTA---AAA
         erecta  GATTTGTATTAAATTTACGTTGATAGCTAACCTATTAGTTAATAGCTAAAAAAATAGGTTAATAGCTGCACAAGAACAAGTTAAAGGGTTCTAGCA-TATT----------TTA---AAA
      ananassae  ------------------------------------------------------------TTTACTT----------------------------------------TGCATTT---AAC
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  --------------------------------------------------------------------GGTCGGAGACGACAGTAAAACCCCCCCACCAGTCCGAAATCATTTC---AAG
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  TAAATTTATATTTTATACAGCAT------------------------AAGCTAA-----------------------------------------A-TGGATTTAAAAATATTAGACAAA
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGG------AAAAGAATCGTTTTATTTAATTTCATTA-----TCCGATAATT-----AAATTCAAATTAATCTTTTAAATTAATTTCTTGTTAAACAAACACTATACT---TTGCTTTTA
       simulans  TGG------AAAATAATCGTGTTATTTAATTTCATTA-----TCCGATAATT-----AAATTCAAATTAATCCTTTAAATTAATTTCTTGTTACACAAACACTACACT---CTGCTTTTA
      sechellia  TGG------AAAAGAATCGTGTTATTTAATTTCATTA-----TGCGATAATT-----AAATTCAAATTAATCCTTTAAATTAATTTCTTGTTACACAAACACTATACT---CTGCTTTTA
         yakuba  TGGGCTTAGAAGAGAATCGTTTTATTCAATTCTACTA-----TACGATAATT-----AAATTCAAATTAATCCTTTAAATTAATTTCTTGTTACACAAACACCACACT---CTACTTTTA
         erecta  GGGGCTTA-AAAAGAATCGGTTTATTCAATTCCATTA-----CACGATAATT-----AAATTCAAATTAATCCTTTAAATTAATTTCCCGTTGCACAAACACTACACT---CTGCTTTTA
      ananassae  AGG------AA------------ATTAAATTCCA--A-----TAAAATAACTGCCCCACTTGCAAATTAA---TTTCCATTACTCCTTGGTT------ATTCTATACCAGGATATTTTTA
  pseudoobscura  ----------------------------------------------------------------------------------------------------------------TATTTTTA
     persimilis  TTG------ATA----------TTTTTAATTTCAGAAAAGCTTCCGGGGACC-------ATTCAA----------TCGATAAACATCC--------------------------------
        virilis  -------------------------------------------------------------------------------------------TATTTTATCATTTCGTT---T--ATTTTA
     mojavensis  TTG------AAATAAAGTATTATATTT-CTTATATCA-----TTCCAAAGTT-----TATGAAAAAAAAAGACTT----TTAATATTATGTTATATAAAAATTACAAT---T--ATTATA
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMM

                 
   melanogaster  ATTTAAGGAGAGCAGCAATAAAATGCGAAAAACATT-GTTACTGG---------A------GTGAACAGGAAACAGTGTAA-------AGGG-------AAGGGGGCA------------
       simulans  ATTTAAGGAGAGCAGTAATAAAATGCGAAATACATT-GTTACTGG---------A------GTGGACAGGAAACAGTGAAA-------AGGG-------AAGGGGGCA------------
      sechellia  ATTTAAGGAGAGCAGTAATAAAATGCGAAATACATT-GTTACTGG---------A------GTGGACAGGAAACAGTGAAA-------AGGG-------AAGGGGGCA------------
         yakuba  ATTTAAGGAGAGCAGCAATAAAATGCGAAAAACATT-GTCACTGG---------A------GTGGACAGGAAGTAGTGGAA-------AGGG-------AAGGGGGCA------------
         erecta  ATTTAAGGAGAGCAGCAATAAAATGCGAAGAACATT-GTCACTGG---------AGTGGACGTGGACGTGAAATAGTGGAA-------AGGGGAGCAAAAAGGGGGCA------------
      ananassae  ATTTCCAGAGAGCTGCCATAAAATGGGAAAAACATTCGATGCT-G---------A------GTGGACAGGA---AGTGAAA-------GGGG-------GAATGGGCAAGGGGCTAGGGG
  pseudoobscura  ATTTCAGAAAAGCTTC-------CGGGAAATATCTA-GATGCTGGCTGGTACGAA------ATCGTCTGGACCCAGT-----------CGGG-------GAAAGCCAA------------
     persimilis  -----------------------------------A-GATGCTGGCTGGTACGAA------GTCGTCTGGACCCAGT-----------CGGG-------GAAAGCCAA------------
        virilis  GCTGCACGTGA--AATTCTGAAGCACAGAAAATAAT-GCC---------CATAAA------ATGGCCAAATTCAAGTTTCACGACTGGCGGA-------ACTTTGGCA------------
     mojavensis  ATTGTTAGTG-------TTAAAATATAAATAGAATT-TTT--------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  MBBBBBBBBBBBBBBRRRRRRRRBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -AT-----AGCAATTTCAATTCTAATCAACCCCCCTTTCCCGTTTTCCCCC---TGCTATCCTGTGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
       simulans  -AT-----AGCAATTTCAATTCTAATCAACCCCCTTT-CTGTTTTCCCCTC---TGCGATCCTGTGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
      sechellia  -AT-----AGCAATTTCAATTCTAATCAACCCCCTTTCCCGTTTTCCCCTC---TGCGATCCTGTGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
         yakuba  -AA-----AGCAATTTCAATTCTAATCAA-CCTCCTTCCCG-TTTCCCCTC---TGCAATCCTGCGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
         erecta  -AA-----AGCAATTTCAATTCTAATCAAGCCCCCTTCCCGCCTTCCCCTC---TGCGATCCTGTGGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
      ananassae  GAA-----AGCAATTTCAATTCTAATCAACCC-------------CCCCTT---TCCGCTCCCGCTGC----------CA-------GGAATACCAAACTAATCTAAATTATTTACACGC
  pseudoobscura  -AA-----AGCAATTTGAATTCTAATCAAACT------CCAGCTACTTCTTGGGGGCATGAGTGGGGC----------AGGAGTTACGGAATACCGAACTAATCTAAATTATTTACACGC
     persimilis  -AA-----AGCAATTTGAATTCTAATCAAACT------CCAGCTCCTTCTT-GGGGCATGAGTGGGGC----------AGGAGTTGCGGAATACCGAACTAATCTAAATTATTTACACGC
        virilis  -ACCTCCAAGAAACTTGAATTCTAATCAACCCCC------------------------AGTTAGTAACAGACAGTCTA-------TACAAATGCTAAACTAATCTAAATTATTTACACGC
     mojavensis  --------AACAACTTGAGCTCTAATCAACCCCC------------------------GGCTAGCGGCAGACAGAGCT-------CGCAAATGGTAAACTAATCTAAATTATTTACACGC
      grimshawi  -AC-----AACAACTTGAATTCCAATCAGCCCCC---------------------------------------------------CAAAAATGCTAAACTAATCTAAATTATTTACTCGC
        Summary  BBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRMMMMMMMMBBB

                 
   melanogaster  TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CAATGGCTAAGCGCAGGTGCGAGCGAGA
       simulans  TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CGATGGCTAAGCGCAGGTGCGAGCGAGA
      sechellia  TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CGATGGCTAAGCGCAGGTGCGAGCGAGA
         yakuba  TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CAATGGCCATGCGCAGGTGCGAGCGAGA
         erecta  TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCG-CCCTAAACAAGATTTACGACCCCCGCAATGGCCGC--CAATGGCTGAGCGCAGGTGCGAGCGAGA
      ananassae  TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACAAGATTTACGACCCCCGCAATGGCCGCCGCAATGGCAA----CAGGTGCGAGCGAGA
  pseudoobscura  TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACGAGATTTATGAGCCCCGCAATGGCGGC--T----GCGACGCGCAGGTGCGAGCGAGA
     persimilis  TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAACGAGATTTACGAGCCCCGCAATGGCGGC--T----GCGACGCGCAGGTGCGAGCGAGA
        virilis  TACAGTAAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAAAGAGATTTACGACAATCGCAATAGGGGC------------GCACAGGTGCGAGCGAGA
     mojavensis  TACAGTGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACGCGCCCCTAAAAGAGATTTACGACGCTCGCAGTGGTGGC------------GCGCAGGTGCGAGCGGGA
      grimshawi  TACAATGAGCAGCTACAATTCGTCCCATAAATCACGACTCCCAGGACACACTCGCCCCTAAAGGAGATTTACGACTCTCGCAATGGTGGC------------GCACAGGTGCGAGCGGGA
        Summary  BBBBBBBBBBBRRRRRRRRBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGGCTGC---TGGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCTTCGCACAGGTAGACA------------------CA--CACACACACATTGTCAT
       simulans  TGGCTGC---TGGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCTTCGCACAGGTAGACA------------------CA--CACACACATA--GGCAA
      sechellia  TGGCTGC---TGGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCTTCGCACAGGTAGACA------------------CA--CACACATATA--GGCAA
         yakuba  TGGCTGC---TCGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCTTCGCACAGGTAGACACACT--------------CA--CACACACTTA--AGCAG
         erecta  TGGCTGC---TCGCTCGCAGGAC---GGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTG-CTTCGCACAGGTAGA--------------------CA--CACACACTTG--GCCAG
      ananassae  TGGCTGCACACCGCTCGCAGGACCGGAGAGTGATGGAATCCAACATGGCTGCCGCAGTGTCTGCCCTCGCACAGGTAGACACACGCATTCACTCACTCACA--CACACACACA--CACAG
  pseudoobscura  CGGCTGC--AGTGCGCACA-------GGAGTGATGGAATCCAACATGGCTGCCGCGGTGTCTG-TGTCGGACAGGTAGACA------------------CA--CGCACACAAA--TACAC
     persimilis  CGGCTGC--AGTGCGCACA-------GGAGTGATGGAATCCAACATGGCTGCCGCGGTGTCTG-TGTCGGACAGGTAGACA------------------CA--CGCACACAAA--TACAG
        virilis  TGGCTAC--TTTATGCACA-------GGAGTGCTGGAATCCAATATGGCTGCCGCAGTGTCTG-TGTCGGACAGGTAGACA------------------CA--CGCGCAGACT--AACAT
     mojavensis  TGGCACC--AGTGCGCAAA-------GGAGTGCTGGAATCCAATATGGCCGCCGCATTGTCTG-TGTAGGACAGGTAGACA------------------CA--CGCACACACA--CACAC
      grimshawi  TGGCTGC--ATTGCGCACA-------GGAGTGCTGGAATACAATATGGCTGCCTTCGCGTATG-GGTCCGACAGGTAGATA------------------CACTCACACACACA--CACAC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGA----------------GAGA----------------------------------GGGAAAGAGCAAAACGTCGGCATGGCAACGCC------------------T----------GA
       simulans  GGG----------------GAGT----------------------------------GGGAAAGAG-AGAACGTCGGCATGGCAACGCC------------------T----------GA
      sechellia  GGA----------------GAAT----------------------------------GGGAAAGAG-AGAACGTCGGCATGGCAACGCC------------------T----------GA
         yakuba  GGA--------GAGTGGGACAGA----------------------------------GGGAAAGAG-AGAACGTCGGCATGGCAACGCC------------------T----------GA
         erecta  GGAGAGATGGTGAGAGGGTGAGA----------------------------------GGGAGAGAG-AGAACGTCGGCATGGCAACGCC------------------T----------GA
      ananassae  ATG----------------GAGA----------------------------------GAAGGAGAG-AGAGTGTTGGCATGGCAACGGC------------------TGATGGAGAAAGA
  pseudoobscura  AGT------------------------------------------------------------GAG-AGAGCGTCTGTATGGCAACGAA------------------T----------GT
     persimilis  AGT------------------------------------------------------------GAG-AGAGCGTCTGTATGGCAACGAA------------------T----------GT
        virilis  ACA----------------CACACGCAAACGCATATT--------------------AAGAAAGCG-GCGGCGTCGTCATGGCAACGAC------------------T----------GT
     mojavensis  AAA----------------CAGACAGAGAGAAACATG--------------------AAGAATGCG-GGAGCGTCGTCATGGCAACGGC------------------A----------GT
      grimshawi  ACA----------------CACACACAAAGCCATATGCAGAGACACACACACACTCTCAGAAAGCG-GGAGCGTTGTCATGGCAACGACTGTTGTTGTTGTTGTTGTA----------GT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GTTTTTTCTTAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--GC------------
       simulans  GTTTTTTCTAAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--CC------------
      sechellia  GTTTTTTCTAAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--CC------------
         yakuba  G-TTTTTCTTAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--GC------------
         erecta  G-TTTTTCTTAGTGTGAGTGGT-------------------------------------------------------GAGTCGGCGC--AGCCAAACCGGAATT--CC------------
      ananassae  GATGGACGGGGGATTGAGTGGT-------------------------------------------------------GAGTCGGCGC--GG-GAAACCGGAATG--CCATCCACCGGGAA
  pseudoobscura  GCTG------------AGTGGT-------------------------------------------------------GAGTCGGCGC--AGGCAAACCGGAATT--TT------------
     persimilis  ----GCTGACAGAGCAAGTGGT-------------------------------------------------------GAGTCGGCGC--AGGCAAACCGGAATT--TT------------
        virilis  TGTTGCTGCTGCTGGCAGAGAG-------------------------------------------------------AGGTCGAC-----------------------------------
     mojavensis  TGTTGTTGTTGTTGGCAGAGAG-------------------------------------------------------ACGTCGACGCCAAGCGAAACCGGTATT--TG------------
      grimshawi  TGTTGTTGTTGCTGGCAGAGAGCAGTAAGCGTCGCCGTTGTTATTTGGTGGTGACTCTGAGTGGTGTTGGTGGTGGTGAGTCGGCGCCAAGCGAAACCTGAATTGCTG------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --GAAG-AGAGC--------ACTCACACGTGGATGTGAATGTGGA------------TCTGAGCGAAAAGGAGAGCGCTCACTTTGAGTCACGG-------CCCAACTTTGTTATTGATT
       simulans  --GAAG-AGAGC--------ACTCACACGTGGATGTGAATGTGGA------------TCTGAGCGAAAAGGAGAGCGCTCACTTTGAGTCACGG-------CCCAACTTTGTTATTGATT
      sechellia  --GAAG-AGAGC--------ACTCACACGTGGATGTGAATGTGGA------------TCTGAGCGAAAGGGAGAGCGCTCACTTTGAGTCACGG-------CCCAACTTTGTTATTGATT
         yakuba  --AAAG-AGAGC--------ACTCACACGTGGATGTGCATGTGGATGTGGATGTGGGTCTGAGCGGAAAGGAGAGCGCTCAGTTTGAGTCACGG----CAACTCAACTTTGTTATTGATT
         erecta  --GAAG-AGAGC--------ACTCACACGTGGATGTGCATGTGGATGTGGC------TCTGAGCGGAAAGGAGAGCGCTCAGTTTGAGTCACGG-------CCCAACTTTGTTATTGATT
      ananassae  AAAGAG-AGAGCGCCTGCCTGCCTACACGTGGAGCTGGAGCTAGAGCCGGAGCCGGAGCTGAGCGGAAAAGAGAGCTAGGAAATTGAGTCACAAGCCGCAGCCAGAGTTTGTTATTGATT
  pseudoobscura  --CGAG-AGAG---------ACAGAGAGAGAGAGTGAGATGTGGG---------------GAGAGTGAGAGTGAGCACACA-------TAGCAG-------CAGGAATTTGCTATTGATT
     persimilis  --CGAG-AGAG---------AGAGATAGAGAGAGAGA-----------------------GAGAGTGAGAGTGAGCACACA-------TAGCAG-------CAGGAATTTGCTATTGATT
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  --AGAG-AGAGA--------A---------------------------------------------------------------------------------------------------
      grimshawi  --AGAGCAGAGC--------AAGCGCACTTTGAGCCAGATGGTGT------------TGCGGGCCAAAGAGCCAGCACTCAATCTCTGAAACAG-------TGCGAGAC--ATATTGATT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMM

                 
   melanogaster  TTCCAATG---CCA--ACT------GCAGTTCCACTCA--------TATCGAA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGGAAAAGTCTAGAGTCTAAGACGGT
       simulans  TTCCAATG---CCA--ACT------GCAGTTCCACTCA--------TCTCGAA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGGAAAAGTCTAGAGTCTACGACGGC
      sechellia  TTCCAATG---CCA--ACT------GTAGTTCCACTCA--------TCTCGAA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGGAAAAGTCTAGAGTCTACGACGGC
         yakuba  TTCCAATG---CCA--ACT------GCGGTTCCACTCA--------TCTCGAA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGG-AAAATCTTCTGTCTACGACGGT
         erecta  TTCCAATG---CCA--ACT------GCAGTTCCACTCA--------TCTCAAA-------------AACTATTCGAAAAGCGTTAAATCCGCTTGGGAAAAATCTACAGTCTACGACTGT
      ananassae  TTCCACGG---CCGCTGCT------GCTTTTCCACTCA-------------AA-------------AACTATTCGGAAAGCCTTAAATCCGCTTGGGAAACG--GACAATC---GACGTT
  pseudoobscura  TTCCATTGAACCCG--GCCAGGAAGGCATTTTCACTCAATACTCATTTTCAAACTGGCAATCAAATCATGATTCGAA---CGCAGAGACAGCTATGGAAGAGACGAAAATC---CACATT
     persimilis  TTCCATTGAACCCG--GCCAGAAAGGCATTTTCACTCAATACTCATTTTCAAACTGGCAATCAAATCATGATTCGAA---CGCAGAGACAGCTATGGAAGAGACGAAATTC---CACATT
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  TTTCATTCAAGTCA--ACG------GCAGATT----------------------------------------------------------------------------------------
        Summary  MMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTCAATTCGGGTTTCG---GATTT-----------------------------------GAGTGTTTAAGCGAGCGGCGTTGTGGGGGACTTTCGAGGGTTC----------ATTGATCT
       simulans  TTCAATTTGGGTTTCG---GATTT-----------------------------------GAGTGTTTGAGCGAGCGGCTTTGTGGGGGACTTTCGAAGGTTC----------ATTGATCT
      sechellia  TTCAATTTGGGTTTCG---GATTT-----------------------------------GAGTGTTTGAGCGAGCGGCTTTGTGGGGGACTTTCGAGGGTTC----------ATTGATCT
         yakuba  TTCAATTCTGGTTTCG---GTTTT-----------------------------------GAGTGTTTGAGTGAGCGGCTTTGTGGGGGCCTTTTGAGGGTTC----------ATTGATCT
         erecta  TTCAATTCTGGTTTCG---GATTT-----------------------------------GAGTGTTTGAGCGAGCGGCTTTGTGGGGGACTTTTGAGGGTTC----------ATTGATCT
      ananassae  TTCAAATCGGGCTCTG---GGATTTGTTTTCTTCTTTCTTTATTTTTGTTTGCGAGTGAGTGCGTCTGGACGAGCGGCTTGGTGGGAGTCTTTC-AGGGTTC----------AATGATCT
  pseudoobscura  TTAAACAAAAATATCAACTGAGTC-----------------------------------GAGTTTGTGAGTGGCAGTCCATCGTGAGGTCTTTT-ACGGTCT----------TTAAATCC
     persimilis  TTAAAGAAAAATATCAACTGAGTC-----------------------------------GAGTTTGTGACGGTCAGTCCATCGTGAGGTCTTTT-AGGGTTCATTCATATTGATAAATCC
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ----------------------------------------------------------------------------------------------------------------------CT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTCTAAAAATTATGAA-------ATCTTTATTA-TAAGCAGAGTA-TGGAGGAGCTCAGTGAGAGCCAAAGGAGCAGAAGAAGATAGGTAGAGGTAG-TACA--------------AATA
       simulans  TTCTAAAAATTATGAA-------ATCATTATTA-TAAGCAGAGTA-CGGAGGAGCTCAGCGAGAGCCAAAGGAGCAGAAGAAATTTTGTAGAGGTAG-TACA--------------AATA
      sechellia  TT-TAAAAATTATGAA-------ATCATTATTA-TAAGCAGAGTA-CGGAGGAGCTCAGCGAGAGCCAAAGGAGCAGAAGAAATTTTGTAGACGTAG-TACA--------------AATA
         yakuba  TTCTAAAAATTATGAT-------TTCATTATAA-TAGGGAGTGTA-TTTAGGAGCTCAACGAGAGCCAAAGGGGCTAATGAAATGTTGTGGAGGTAG-TACA--------------CGCA
         erecta  TTCTAAAAATTATGAT-------TTCAAATTAA-TAAGGAGAGTA-TTTAGGAGCTCAACGAATTCCAAAGGGTCAGGAGAAATATTGTCGA-GTAG-TACA--------------AGCA
      ananassae  TTTCACAAAAGAGAAA-------AT--TTATTA-GACATTGAAAA-T-------------------------------------------------------------------------
  pseudoobscura  TATTGGACATAAAGAATTATGAATTAAGGAATA-CGGGTGGAGTA---------------------------------------------------------------------------
     persimilis  TATTGGACATAAGGAA------------AACTA-CGGGTGGAGTAA-ATATGATATCAG-------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  TTC---GCATAGTAAA-------GTCTCTCTGAGCACATAAAACA-TGTAATATGCAA---------------------TTGTCTCTATCGATGCAGATACACAGATAACCATTATACTG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTACAGAAATGAAAGGTATTTCAAAAAGCGTTAAGTGTTGATTAGGGTGAATGAGTTTCTATTG-TTTATATA-CTGCTTAAAACAAAAATATTTAA-TT--------------------
       simulans  TTTCAGAAATGAAAGGTATTCCAAAAATCGTTAAATGTTGATTAGGGTAAATGAGTTTCGTTTG-CTTATATA-CTGCTTTAAACAAAAATATTTTA-TTGAATTTAATTTTAGA-----
      sechellia  TTTCAGAAAGTAAAGGTATTCCAAAAATCGTTAAATGTTGATTAGGGTGAATGAGTTTCGTTTG-TTTACATA-CTGCTTTAAACAAAAATATTTTA-TTGAATTTAATTTTAGA-----
         yakuba  TTTCAGAAATGAAAGGTGTTTCAAAAA---TTAATTGTTGATATGGAGAAATAAGTCTGGTTTG-CTTATATA-CTGTGTTAAACAAAAATATAATA-TTGAATTTAATTTTAGA-----
         erecta  TTTCAGAACTAAAAGGTATTTTAAAAATCCTTAATTGTTGAT------AAATGAGTTTTATTTG-TTTGTCTA-GT-TGCGTAAAGGAAATATATTA-ATGAATTTAATTTTAGA-----
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  -----------------------------------------------------------------TCTATAGG-----TCGTAATAAACATATTT---ATCCCTTCATTTTTAATGATCT
      grimshawi  TCATATGGAATAATTATAATTACAAAACATTTACTTGATGAC-GGAATAAAAAGGGTTCATAGGCTCTGAAGACATGCTCGATTTAGATTTACTTTAAATTAACTCATTTTGAAT-----
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -----------------GAAGCGTTTAATTAG-----TAAAAA---------------CAAATGAAATAAATA----TATTTTAA-----------------------------------
       simulans  -AGGAAACAAAAGCTAAGAAACGTTTAATTAA-----TAAAAA---------------CAAATTAATTATATA----TATTATAA-----------------------------------
      sechellia  -AAGAAACAAAAGCTAAGAAACGTTTAATTAA-----TAAAAA---------------CAAATTAATTATATA----TATTATAA-----------------------------------
         yakuba  -TACAAAC-AAAGCTCAAAA--ATAAAGTTAGTTGAATAAAAT---------------CAAATGAATT---AA----TACCTTGAAATGATAATGAATTGGTACTCTTAATTGCATTTCT
         erecta  -TACAAAC-AAAGCTCAAAAACATGAAATTAG-TGAATTAATA---------------TAAATGAATT---TA----TACCTTGAG----------------------------------
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------TAATATTAAAAAATTGTAA-----------------------------------
     mojavensis  ATC-------------------------------GTATA------ATTTGTAATTTATCAAA----TTACATT----TATTTTTA-----------------------------------
      grimshawi  -TG-------------------------------GTATGAAAAATACTTGAAAATTTCCAAT----TAGTATC----GATGATAA-----------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTGCAT--TCATTAATAACA------TGCGTCAATTTGCCCCCTGGTGAGTCATTAAGTTAGATTAATCTCACAGAGTA--TTTATAAAG---CAAAAATACCTTTGAAGTTTTCTGATG
       simulans  TGGCGT--TCATTAATAACA------TGCGTCATTATGCCCCCTGGTGAGTCATTAAGTTAGATTAATCTCACAGAGTA--TTTATAAAG---CAAAAATACCTTTGAAGTTATCTAATG
      sechellia  TGGCGT--TCATTAAAAACA------TGCGTCATTATGCCCCCTGGTGAGTCATAAAGTTAGATTAATCTCACAGTGCA--TTTATAAAG---CAAAAATACCTTTGAAGTTATCTTATG
         yakuba  CTGCTTACTTTCTAACATCA------TGAGTCAATATA-ACCCTGATGAGTCATTAAGTGAGATTAATCTCACGAAATACGTTTATAAAG---AAAAAATACCTTTGAAGACTTCAGACA
         erecta  CTGCTTAATTTTTAACACCA------AGAGTCAATATA-ACCCTG------------GTGAGATTATTCTCACGGAATATGTTTATAAGG---CCAAAATACCTTTGAAGTCTTCAGACA
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  -----------------------------------------------------------------------------------------------------------------TCTGGCA
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  CATGTT--TAATAAATGGCT--------TATTGA-------------AAAGCATTACAATTAG-------------ACA--ATTAAAAAT---CATTCATATTATCGATGCGTTT---CT
     mojavensis  TTTCTT--TCGTTATTTCCT------TCTATTTATTTGCCCACCTCTAAAACCTTA----------------------A--TTTATATAT---CATAAAGTTTATTGAAACT--------
      grimshawi  TTGTAT--ATCTGAATATATATGCAATATAATTA---------------AACAATAAATGTGA-------------ATA--TAAAAACATATGCATTTAAATTATTAAAGCATATTGACA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TAAG-------CAATT------------------GACTTA--AATTCATGGATAAGAAGTGGGTTAT---------TGGTTGAATT-----TCAATTACACACTCATCGTTAAATT-AAC
       simulans  TAAG-------CAATTGACT------CGCAAATCGACTTA--AATTCATGGATCAGAAGTAGGTTAT---------TGGCTGAATT-----TCAATTACACACTCATCGTTAAATT-AAC
      sechellia  TAAG-------CAATTGACT------CGCAAATCGACTTA--AATTCATGGATCAGAAGTAGGTTAT---------TGGTTGAATT-----TCAATTACACACTCATCGTAAAATT-AAC
         yakuba  CAAG-------CAATTGAAT------CGTAAATCGACTCA--AATTCATAGATCAGAAGTAGGCTAT---------TGCTTGAATT-----TCAATTACACACTGATCGTTAAATT-CAC
         erecta  CAAGGAATCGTAAATTGAAT------CGTAAATCGAGTAA--AATTCATAGATCAGAAGTAGGCTAT---------TGGCTGAATT-----TCAATTACACACTCATCGTAAGATT-CAC
      ananassae  -----------------------------------------------------------TGCGTTAT-----------GATGATTT-----TCAATTGCACACTCGCCCATAAATTGCGT
  pseudoobscura  TCAGA------CAATTGGGTTTCCCCCCCAGGCTTCCTTG--AA------GATT-----TGGG------------------GACTT-----TCGATGGCGCTCTCA-CAATACATT-TTC
     persimilis  ------------------------------------------------------------------T---------TGCTTGAAGA-----TCGAT-TCGCTCTCA-CAATATATT-TTC
        virilis  CA---------CAGTTTGGTTTCT--TGCAAACTAGTTTT-CGATTGATTT--------AATTTTATCCGTGACTTCGATTGAATTACATCCCCGATGTACAGATAAAATTCAATG-AAT
     mojavensis  -----------CGTTTTGATTT--------AATTGATTTT--------------------ATTTCATCCGCGGCTTCGAATGACTTACGGCTCAGATGCACAGATAAAAGTCAATG-AAT
      grimshawi  GA---------CAATTCAGTTAAA--TGCAAATTTGTTTTTCAATTGATAA--------TGTTTTAT------ATTTCATTGACTTACATCTCCGTTGCACAGATAAAAGTCAATG-AAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTGAGAGCTTCGGTAGATTTGACAAGCGCTTAGCGGCTATCTTAA-------GTTTATA--------TTTTCGAGTTG------AGGTGG--CCGGTCGAACCGGTCCGTTGCACAATTA
       simulans  TTGAGAGCTTCGGTAGATTTGACAAGCGGTTAGCGGCTATCTTAA-------GTTTATA--------TTTTTGAGTTG------AGGTGG--CCGGTCGAACTGGTCCGTTGCACAATTA
      sechellia  TTGAGAGCTTCGGTAGATTTGACAAGCGGTTAGCGGCTATCTGAA-------GTTTATA--------TTTTTGAGTTG------AGGTGC--CCGGTCGAACCGGTCCGTTGCACAATTA
         yakuba  TTGAGAGCTTCGATAGATTTGACAAGCGCTAAGCGGCTATCTTAA-------GTTTATA--------TATTTGAGTTG------AGGTGG--CCGGTCGAACCGGTCCGTTGCACAATTA
         erecta  TTGAGAGCTTCGATGGATTTGACAAGCGCTAAGCGGCTATCTTAA-------GTTTATA--------TGTTTGAGTTG------AGGTGG--CCGGTCTAACCGGTCCGTTGCACAATTA
      ananassae  TTAAGCGCTC------GCTAGACAAGCGCTTAGCGGCTGTCTTGATCGGTGGGTCTTTG--------AATTT-AGTTG------AGGTGG-CCCGGTCGAACCGGTCCGTTGCACAATTG
  pseudoobscura  CTAATATCT-CGATAGTCGTGACAGTCGCTGAGCAGATATCGCAT-------G-----A--------CTTTGGAGCCGCATGCACGGCGG--CTGGCCTAACCGGTTAGTTGCACAATTG
     persimilis  CTAATATCT-CGATAGTCGTGACAGTCGCTGAGCAGATATCGCAT-------G-----A--------CTTTGGAGCCGCATGCACGGCGG--CTGGCCTAACCGGTTCGTTGCACAATTG
        virilis  TTA-------CTGCGCATTTAATTAGCGGTAACTAGAAATC--AG-------GTTTAAG--------TCTGCGA----------AGCTAG-CCCAAGCGAACGGGTTTATTGCACAATTC
     mojavensis  TTA-------CAGTGTATTCAATTAGCGGTAACTGGAAAAC--CA-------GTTGACGC-------TTTGCAC----------AGCTAA-TCCAACTGAACCGGTTCATTGCACAATTC
      grimshawi  TTA-------TGGC-CATTTAATTAGCGGTAACTAGAAATC--AA-------GTTTAAGCCAGGCGACTGGCGA----------TCCCAATCCCAAGCTAACCGGTTTATTGCACAATTC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTAAGGAAAA-----CCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGAAGCGA---------CGGGCGGGTAA-------------
       simulans  CTAAGGAAAA-----CCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGAAGCGA---------CGGGCGGGTAA-------------
      sechellia  CTAAGGAAAA-----CCATTTTT---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGAAGCGA---------CGGACGGGTAA-------------
         yakuba  CTAAGGAAAA-----CCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGA--------------------------------------
         erecta  CTAAGGAAAA-----CCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGAGTGAAGCGA---------CGGGCGGGTAA-------------
      ananassae  CGTAGGAAAA-----ACATTTTC---------CAATT-AAGAATCAATTAGCGCGCCATAAATCGTGGCTGCAATTGACTGAAGCGG---------CGGCC-AGTAA-------------
  pseudoobscura  CGCAGAAAACCATTTCCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCGTAAATCGAGGCTAAAATTGACTGATACGGCCCTGCTCCTGGCCCG--AA-------------
     persimilis  CGCAGAAAACCATTTCCATTTTC---------CAATT-AAAAATCAATTAGCGCGCCGTAAATCGAGTCTAAAATTGACTGATATGG--CTGCTCCTGGCCCG--AA-------------
        virilis  CGTGCAAAAT-----CAATTTTC---TTTCTACTTTTAAAAAATCAATTTGCGTGCCATAAACTGCCGCTGCAATTGATTGATGAT-------GCGGCGCTTCTTAA-------------
     mojavensis  AGTGAAAAAT-----CAATTTTC---ATTTTACAATT-GAAAATTAATGGACCTACCACAATTCGACGCTGATATTGATTAACGAT-------TCGACGATTCGCAA-------------
      grimshawi  A-TGCAAAAT-----CATTTTCCATTTTTTTTCAATT-TAAAATCAATTAGCTGGCCATAAACATTTGCTGCAATTGACTGGCGAT-------GTGTCATTGCTTGACCGAAACTTTTGT
        Summary  BBRRRRRRRRBBBBBBBMMMMMMMMBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----------------ACAAAACAGCCAGGCGG--------------AAAATCGAGCTGAGG---GC----AGAAATCTGTTTCGGAATCGAAGGA-------AATTCCAGACGCGGTGG
       simulans  ----------------ACAAAACAGCCAGGCGG--------------AAAATCGAGCTGAGG---GC----AGAAATCTGTTTCGGAATCGAAGGA-------AATTCCAGACGCGGTGG
      sechellia  ----------------ACAAAACAGCCAGGCGG--------------AAAATCGAGCTGAGG---GC----AGAAATCTGTTTCGGAATCGAAGGA-------AATTCCAGACGCGGTGG
         yakuba  -----------------------AGCCACGCGG--------------AAAATCGAGCTGGGG---CC----TGAAATCTGTTTCGGAATCGGAGGA-------GATTCCAGACGCGGTGG
         erecta  ----------------ACAAAATAGCCAGGCGG--------------AAAATCGAGCTGGGG---CC----TGAAATCAGTTTCGGAATCGGAGGA-------AATTCCAGACGCGGTGG
      ananassae  ----------------ACAAAAATCCGAAATAA--------------AACGAAAAAATTGGG---CC----ACAAATC-----CAGAA----GGGA-------AATTCCAGACGCGGTGG
  pseudoobscura  ----------------ATGCAACAAGTAAACAA--------------ATCAGCGAGCTAGAA---CC----AGAACCACAACCAGAAACAGACAGA-------AATTCCAGACGTAGCGG
     persimilis  ----------------ATGCAACAAGTAAACAA--------------ATCAGCGAGCTAG-------------------AACCAGAAACAGACAGA-------AATTCCAGACGTAGCGG
        virilis  ----------------ACAGAATC-CGAAACTGGTATTGTTCATTTGGGCATCCGGTTGGGACAACCATCGAGTAAACAAATGCAGCGTTAAGAGATGCCGCACTTTCCAGACTCATTGG
     mojavensis  ----------------ATTG-----CGAATCTG--------------------------------------------------------------------------------------G
      grimshawi  GCGTCTAAAATATGTTACTGAGTTATGGATCGT----------TCTGAAAATCGAGCTGG-----CC---------ACAGCTGTGGCCTCTACAGACGCTAC-CATTGCAGACGCCCTG-
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CGTTGGCG---------T-----CCAAAATGGGGCTGCC--------CA---CAATGGGCAAT------------TCCACTGTATACTCT--------A---------------------
       simulans  CGTTGGCG---------T-----CCAAAATGGGGCTGCT--------CA---CAATGGGCAAT------------TCCACTGTATACTCT--------A---------------------
      sechellia  CGTTGGCG---------T-----CCAAAATGGGGCTGCT--------CA---CAATGGGCAAT------------TCCACTGTATACTCT--------A---------------------
         yakuba  CGTTGGCG---------G-----CCAAAATGGGGCAGATCCAAATGGGATCCAAATGGGCTAT------------TCCAGTGTATACTCT--------C---------------------
         erecta  CGTTGGTG---------G-----CCAAAATGGGGCAGAT--------GA---AAATGGGCTAT------------TCCACTGTATACTCT--------A---------------------
      ananassae  CGTTGGAG---------CAAGTACTATTCTGATACCGATTCGGAT--GG---AAATCGGTTA-------------------GGTTATTCA--------C---------------------
  pseudoobscura  CGTTGG-----------------CCAAATAGAG--------------CA---AGAGGCACAAT-------------CGAGTGCCTGCTTT--------GGAATCAGAATTGAAATCAGAA
     persimilis  CGTTGG-----------------CCAAATAGAG--------------CA---AGAGGCACAATCGAAGTCGAGTGCCGAGTGCCTGTTTT--------GGAATCAGAATTGAAATCAGAA
        virilis  TG-TTGAGAAAGTAGCAA-----CAAAGGTGGG---ACT--------AG---GGACTCAACGG------------------GTCAACGGTGCCGGAGCG---------------------
     mojavensis  CGATTGAG---------A-----CTGAGATGGAATCATC--------AA---AGACAAAGAAG------------------GACAGCGTT--------A---------------------
      grimshawi  -------------------------------------------------------------------------------------GCGTT--------G---------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -CGGATT--GGCTGAGGA---------------AATC-------CGAGAGGTGACAAAAAG--GCCAGGAAAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
       simulans  -CGGATT--GGCTGAGGG---------------AATC-------CGAGAGGTGACAAAAAG--GCCAGGAAAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
      sechellia  -CGGATT--GGCTGAGGG---------------AATC-------CGAGAGGTGACAAAAAG--GCCAGGAGAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
         yakuba  -CGGATC--GACTGAAGA---------------AATC-------CGAGAGGTGACAAAGAG--GCCAGGAAAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
         erecta  -CGGATT--GGCTGAGGA---------------AATC-------CGAGAGGTGACAAAGAG--GCCAGGAAAGCC---GTCCCAAGGCGCCGCTGTCAACGGTGCGAATGG--GCCTGGG
      ananassae  -CGAACC--GGGAGACGGGAAACG-GGATACGTAATC-------CGGGAGGTGACATTATA--GCCAGAGAAGTC---GTCCCAAGGCGTCGCTGTCAACATTCGGAATGG--GACCGTG
  pseudoobscura  TCTGATTAAGACAGAAGA---GCGTGGACCCGTAGCCGCACTGACGGAGAACGACAAGA------CGAGATGGCC---GTCCCAAGGCGCCGCTGTCAACGTTGTGAATGG--GACTTGG
     persimilis  TCTGATTAAGACTGAAGA---GCGTGGACCCGTAGCCGCACTGACGGGGAACGACAAGA------CGAGATGGCC---GTCCCAAGGCGCCGCTGTCAACGTTGTGAATGG--GATTTGG
        virilis  -GCAAAT--GGAAAAAG--------------------------------------------------GGTGAATATTTACGGAAAGGCGTC--------CCAAGAAACCG----------
     mojavensis  -ATAGGT--GATAAGAT-----------------------------------GATAAAGGG--GGCAGGAAAACA---GCCGAAAGCTGGC--------CAATGTGTCTGA--GTATGGG
      grimshawi  -GC----------------------------------------------------CAAGTACCGTCGTGGCTGCA---ACTGCAGACTGAA--------AAGGGCTGCAGATTGCATTTG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AATGGTT------------ATGGGAAT------------GAGAATGGGAATGGTTATGG-------------CACAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
       simulans  AATGGTTATGGGAACGAGAATGGGAAT------------GAGAATGGGAATGGTTATGG-------------CCCAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
      sechellia  AATGGTTATGGGAACGAGAATGGGAAT------------GAGAATGGGAATGCTTATGG-------------CCCAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
         yakuba  AATGGTTATGGGAACGAGAATGGGAATGGGAATGAGAATGAGAATGGGAATGGTTATGG-------------C-CAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
         erecta  AATGGTTATGGGAAC------------------------GAGAATGGGAATGGTTATGG-------------C-CAGACCCGGGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
      ananassae  AATGGTTATGGGGAGGAGAATGGTTAT------------GAGAATGGGCCCAGCCAGAC-------------CCGGGTCTGGGGATAGCCTCTATAACAATGACATTAACAATTAAAAAT
  pseudoobscura  -ATGGTTATGAGAATGGTTATGGGGAT------------GGGAATGGGAATCGGAATGGGAATGGGCCCAGACCCGGACCC-GGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
     persimilis  -ATGGTTATGAGAATGGTTATGGGGAT------------GGGAATGGGAATGGG------------------CCCAGACCC-GGACAGCGTCTATAACAATGACATTAACAATTAAAAAT
        virilis  -----TTGTCAGT-----------AAT------------GTGAATGG-------------------------GTCGTTC-------------TATAACAATAACATTAAAAATTAAAAAT
     mojavensis  TATGAGTATGAGTAT------GGGAAT------------GGGAATGGGAACGAGCA----------------GACAGCG-------------CACAGCAGTTGC---AACAGTTGCAAGT
      grimshawi  TGAGATTATCAGG----------------------------GAATGC-------------------------CTCGGC-----------------------------AACAATTGAAAAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRB

                 
   melanogaster  ATTAATAATCA-----------------------TA
       simulans  ATTAATAATCA-----------------------TA
      sechellia  ATTAATAATCA-----------------------TA
         yakuba  ATTAATAATCA-----------------------TA
         erecta  ATTAATAATCA-----------------------TA
      ananassae  ATTAATAATCA-----------------------TA
  pseudoobscura  ATTAATAATCA-----------------TAAAAGTA
     persimilis  ATTAATAATCA-----------------TAAAAGTA
        virilis  ATTCATTATAA-----------------------TA
     mojavensis  TGCAGTTACAACTGTTGTTGCTGCTGCGCATACGTA
      grimshawi  ATTCATGATAT-----------------------TC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBR


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