crm
                 
   melanogaster  TATCTAC--TATTTTCAGT----TATATT-TTTATTTTAATTATTTTCCACG---CGCATTTCTCGACTA------TTTTTTCGAGTGTTG---CAACAAGTGG-C--TCG-A-------
       simulans  --TCTAA--TATTTTCAGT----AATATT-TC--TTTTAATTATTTTCCACATTCCGCATTTCTGGACTA------TTTTTTCGAGTGTTG---CAACAAGTGG-C--TCG-A-------
      sechellia  --TCTAA--CATTTTCAGT----TATATT-TC--TTTTAATTATTTTCCATATTCCGCGTTTCTGGACTA------TTTTTTCGAGTGTTG---CAACAAGTGG-C--TCG-A-------
         yakuba  --TTCAA----CTTTAAGT----TGTTACTTT--TTTCAACTTTAATTTGTTGACTATATATTTTGTAGATATTTTTTTTTTCGAGTGTTG---CAACAAGTGC-C--TCG-A-------
         erecta  --TTAAACTTCCTTTAAAC----TCTTTC-GT--TTTCAACTGTTAGTTGTTCACTGCATACGCCGCGTA------TTTTTTCGAGTGTTG---CAACAAGTGC-C--TCG-A-------
      ananassae  --ACCGA--GATATAAGGTTTAATATTAT-TT--TTTGAGCAACCCCTAATAGTCC--------------------TTTTCTGTTATGTTGTGCCGACAAGTGT-C--TCTCA-------
  pseudoobscura  -----------------------------------------------------------------------------------------------AACAAGTGC-C--TTG-C-------
     persimilis  -----------------------------------------------------------------------------------------------AACAAGTGC-C--TTG-C-------
        virilis  --TCCGA--GATGTATTGGT---TCTGGT-TG--GTCTTGGC----------------------------------CTGGATCTAATG-------ATCAAGTGCAC--GCG-A-------
     mojavensis  TGTCCAA--CATCTCGTGA----TCTATT-TG--GTCCAG-------------------------------------TGGTCCAGGCG-------ATCAAGTGCACGAGCG-AGCCCTTC
      grimshawi  TGGCCAG--CCTGGCCTGG----CCTGGC-TT--GGCCTGGCTTGG------------------------------CTAGCTGCAGCG-------AACAAGTGTGC--GCG-A-------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------------------------GTTCAGA------TATCTGGTTA------TTTC-------TTCGGTTCGGGCAAGTGATTTCCAGGGAAGTGTTAG-TATCCCCTT-GTTTCG
       simulans  ---------------------------GTTCAGA------TATCTGGATA------TTTC-------TTCGGTTCGGCCAAGTGATTTCCAGGGAAGTGTTAG-GATCCCCTT-GTTTCG
      sechellia  ---------------------------GTTCAGA------TATCTGGATA------TTTC-------TTCGGTTCGGCCAAGTGATTTCCAGGGAAGTGTTAG-GATCCCCTT-GTTTCG
         yakuba  ---------------------------GCTCAGA------TATCTGGAGA------TTCT-------TTCGGTTCGGCCAAGTGATTTCCCGGGAAGTGTTAG-GATCCCCTT-GTTTCG
         erecta  ---------------------------GTTCAAA------TATCTGGAGA-----TTTTT-------TTCGGTTCGGCCAAGTGATTTCCCGGGAAGTGTTAG-GATCCCCTT-GTTTCG
      ananassae  ---------------------------GTTCGGA------CATCTATAGG------TTCTGGTTCTGTTCGGACGGGGCAAGTGATTTCCCTGGAAGTGTTAG-AATACCCTT-GTTTCG
  pseudoobscura  ---------------------------CTTTTGAGCCTTACTTTTGGGTAGGATTTTCCT-------TGCTGTTGGGTAAAGTGATTTCCCTGGAAGTGTTAG-AATCCTCTT-GTTTCG
     persimilis  ---------------------------CTTTTGAGCCTTCCTTTTGGGTAGGATTTTCCT-------TGCTGTTGGGTAAAGTGATTTCCCTGGAAGTGTTAG-AATCCTCTT-GTTTCG
        virilis  ---------------------------CTTTTAA------TATTT-----------------------------TTGTCAAGTGATTTCCTGGAATGTGTTAG-AAACTTCTC-TTTTCG
     mojavensis  GTCTTCTCCTCCTCTTTTTTTTTTTTTTTTTTGA------TATTT-----------------------------TTGTCAAGTGATTTCCAGGAATGTGTTAGAAAACTTCTTGTTTTCG
      grimshawi  ------------------------GTTTTTGGGA------GATGT-----------------------------TTGTCAAGTGATTTCCTGGAATGTGTTAG-AAACCTCTT-GTTTCG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GCACTCTTTC-T---------------TCACCCCTCCCCACCCCCCCCCCACACACACACACACACATACACACGCACACACAATTTTTGCCCCTATTTAGGGG--CTGTAAATTGAGGC
       simulans  GCACTCTTTC-T---------------TCACCACCCCCCCACCCCC----------GCACACACACACACACACACACACACAATTTCTGCCCCTATTTAGGGG--CTGTAAATTGAGGC
      sechellia  GCACTCTTTC-T---------------TCACCACCCCCCCCCCCCC-------------CACCACCGCACACACACACACACATTTTCTGCCCCTATTTAGGGG--CTGTAAATTGAGGC
         yakuba  GCACTCTTTCGT---------------GCGCCCCCTCCCCCCTCTC--------------------------------------TTTCTGCCCCTATTTAGGGG--CTGTAAATTGAGGC
         erecta  GCACTCTTTC-T---------------GCGCCCCCTCTC------T--------------------------------------TTCCTACCCCTATTTAGGGG--CTGTAAATTGAGGC
      ananassae  GCACTCTTTT-A---------------GAACTACCACTCGGCTTTT-----------------------------------TGTCTTGTAGGGCTCTTTAGGGG--CTGTAAATTGATGC
  pseudoobscura  GCACTCTCCC-TCTCTG----------TCTCTCTCTCTCTCTCACT-------------------------------CTGCTGTCTCTTTCTCTTTTTTCGGGGTCTTGTAAATTGATGC
     persimilis  GCACTCTCCC-TCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-------------------------------CTGCTGTCTCTTTCTCTTTTTTCGGGGTCTTGTAAATTGATGC
        virilis  GCACTTTTTG-----------------GCGGC------------AT--------------------------------------------------------AG--TTGTAAATTATTGT
     mojavensis  GCACTCGCAG-C----A-------GCAGCAGCATGAGCAGGCATAT--------------------------------------------------------GG--CTGTAAATTAATGC
      grimshawi  GCACTCTTTC-T----GCTGTTTTGCGGCAGCAGCCGCATCCA-TC--------------------------------------------------------GG--CTGTAAATTGATGC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBRRRRRRRRRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGTTGACATTTTTAGTGCAAA---ATGGTTTCCG----------------------------------------AGGAGATCTCTAATATCTTGTTCGCGGTTGTAACCCC---------
       simulans  TGTTGACATTTTTAGTGCAAA---ATGGTTTCCG----------------------------------------AGGAGATCTCTAATATCTTGTTCGCGGTTGTAACCCC---------
      sechellia  TGTTGACATTTTTAGTGCAAA---ATGGTTTCCG----------------------------------------AGGAGATCTCTAATATCTTGTTCGCGGTTGTAACCCC---------
         yakuba  TGTTGACATTTTTAGTGCAAA---ACGGTCTCCG----------------------------------------AGGAGTTCTCTAATATCTTGTTCGCGGTTCTAACCCC---------
         erecta  TGTTGACATTTTTAGTGCAAA---ACGGTCTCCG----------------------------------------AGGAGATCTCTAATATCTTGTTCGCGGTTCTAACCCC---------
      ananassae  TGTTGACATTTTTAGTGCAAAACGACGGTGTCGGTGTACCCTCGGGGATCGGGGATCG----GGGATCGGGGATAGGGGATCTCTAATATCTTGTTCGCGGTTCCCCCCCT-------GC
  pseudoobscura  TGTTGACATTTTTAGTGCAAA---ATGGTCTCCT----------------------------------------AGGAGATCTCTAATATCTTGTTCGCGGTTCGGCCCCTGCCTGTGGC
     persimilis  TGTTGACATTTTTAGTGCAAA---ATGGTCTCCT----------------------------------------AGGGGATCTCTAATATCTTGTTCGCGGTTGGGCCCCTGCC--TGGC
        virilis  TGTTGACATTTTTAGTGTAAA---ATGTGCTCCG------------AATCTGAAACCGAACAGTGAGCAACCACAGCAGTTGTCTTATATCTTGTACGCGGTT-----------------
     mojavensis  TGTTGACATTTTTAGTGTAAA---AT----------------------------------------------------------------------------------------------
      grimshawi  TGTTGACATTTTTAGTGCAAA---ATG---------------------------------------------------------------------------------------------
        Summary  BBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -----------TCTGCGACACACGCTTCATA-AAGGAGC------ACAC---AAAAA---ACACGA-AGAGTAGAAAAGGAACACCA------CACACACACACACGCACACACACA-GG
       simulans  -----------TCTGCGACACACGCTTCTTA-AAAGAGC------ACAC---AAAAA---ACACGA-AGAGTAGAAAAGGAACACCA--------------------CACACACACA-GG
      sechellia  -----------TCTGCGACACACGCTTCATA-AAAGAGC------ACAC---AAAAA---ACACGA-AGAGTTTCAAAGGAACACCA--------------------CACACACACA-GG
         yakuba  -----------TCTGCGACACACGCTTCATA-AAGGAAC------ACACACAAAAAA---ACACGGCCGAGTCGAAAAGGAACA-CACACTCGCACACACACAAACTCACACACACACAG
         erecta  -----------TCTGCGACACACGCTTCATA-AAAGAAC------ACAC---AAAGA---ACACGG-TGAGTAG-AAAGGAACA-CA--------------------CACACACACACAT
      ananassae  ACTTCCAACAATCTCCGACACACGCTCCGAA-AATAAAA------ACAA---AAAAA---AAAAAA--------AAAAGAAAAGAAA--------------------AACACACACA-TG
  pseudoobscura  AGTGCCAGTGCCCCTTGTCACTTGCCCCTTGCCCCTAACACACGGACAC---GGACACGGACACGG---------ACAGGCGCA-CG--------------------CACACGCACA---
     persimilis  AGTGCCAGTGCCCATTGTCACTTGCCCCTTGCCACTAAC------ACAC---GGACACGGACACGG---------ACAGGCGCA-CG--------------------CACACGCACA---
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGAGGGTAATATTTATTATTGAAATTAAAATTTATTGTTTGCTGCTATTGTTTTTCTCTCAG-TTCGACTGTGTGTG--------------TGTGTTTTTTT-----TTTTTGCATCATT
       simulans  GGAGGGAAATATTTATTATTGAAATTAAAATTTATTGTTTGGTGCTATTGTTTTT-TCTCAG-TTCGACTGTGTGTG----------------------TTT-----TTTTTGCATCGTT
      sechellia  GGAGGGAAATATTTATTATTGAAATTAAAATTTATTGTTTGGTGCTATTGTTTTTCTCTCAG-TTCGACTGTGTGTG--------------------TTTTT-----TTTTTGCATCGTT
         yakuba  GCAGGGTAATATTTATTATTGAAATTAAAATTTATTGTTCGATGCTATTGTTTTTCTCT------------TGTGTG------------------------T-----TTTTTGCATCGTT
         erecta  GGAGGGTAATATTTATTATTGAAATTAAAATTTATAGTTTGATGCCATTGTTTTTCCCTTGG-TTCCACTGTGTGTG-----------------------TT-----TTTTTGCATCGTT
      ananassae  GAGGGGTAATATTTATTATTGAAATTGAAATTTATTGTTTAATGCCATTGTTTCTGTTTCAGTTTCAGTTGTGTGTTTTTTCTGTTCTTTTTTTGTTTTTTTTGGTGTTTTTGCATCGTT
  pseudoobscura  --CGAGAAATATTTATTATTGAAATTAAAATTTATTGTTTGATTCTATTGTTT-----------------GTGTGTG------------------TTTGGTT-----TTTTTGCATCGGA
     persimilis  --CGAGAAATATTTATTATTGAAATTAAAATTTATTGTTTGATTCTATTGTTT-----------------GTGTGTG------------------TTTGG-T-----TTTTTGCATCGGA
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBMMMMMMMMBBMMMMMMMMBBBBBBB

                 
   melanogaster  GCCGCTTGATTAGAGAATTCAGTGGAAGTCGTCCAGAGATCTCGAGATCCCGAGAGAT-GACTACAAGTGCGC----------------CGCGTAAAGGTCAAAGGGGGCGTGGTACGAC
       simulans  GCCGCTTGATTAGAGAATTCAGTGGAAGTCGTCCAGAGATCTCGAGATCCCGAGAGAT-GGCTACAAGTGCGC----------------CGCGTAAAGGTCAAAGGGGGCGTGGCACGAC
      sechellia  GCCGCTTGATTAGAGAATTCAGTGGAAGTCGTCCAGAGATCTCGAGATCCCGAGAGAT-GGCTACAAGTGCGC----------------CGCGCAAAGGTCAAAGGGGGCGTGGCACGAC
         yakuba  GCCGCTTGATTAGAGAATTCAGTGGAA---GTCCAGGG-ATCTGAGATCCCGAGAGAT-GGCTACAAGTGCGC----------------CCCGTAAAGGTCAAAGGGGGCGTGGCACGAC
         erecta  GCCGCTTGATTAGAGAATTCAGTGGAA---GTGCAGGGTGCCCGAGATGCCGAGAGAT-GGCTACAAGTGCGC----------------CCCATACAGGTCAAAGGGGGCGTGGCACGAC
      ananassae  GCCGCTTGATTAGAAATTTCCATGGAA---GTCCAATGGTTCTGAAATATGACGTTATGGGCCGCAAGTGCCC----------------ACCGAAAAGGTCAAA-GGGGCGGGTCGCGAC
  pseudoobscura  GCCGCTTGATTAGAGAATTCCCTGGAA---GT------------AGATG--AAGATTC-GGTTGCAAGTGCGCGCCCCCGCCCCCAGCGTCCGAAAAGGTCAAAGGAGGCGCGCCCTGGC
     persimilis  GCCGCTTGATTAGAGAATTCCCTGGAA---GT------------AGATG--AAGATTC-GGTTGCAAGTGCGCGCCCCCGCCCCCAGCGTCCGAAAAGGTCAAAGGAGGCGCGCCCTGGC
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTTGCAATGTGACCTGAGTATTGCGCAATCTGTCG-----------TTCGATTCAGTTG--------GTTAT-AAATT----------------------TGGATATGTGTGGATGAGAA
       simulans  CTTGCAATGTGACCTGAGTATTGCGCAATCTGTCG-----------ATCGATTCAGTTG--------GTTAT-AAATT----------------------TGGATATGTGTGGATGAGAA
      sechellia  CTTGCAATGTGACCTGAGTATTGCGCAATCTGTCG-----------ATCGATTCAGTTG--------GTTAT-AAATT----------------------CGGATATGTGTGGATGAGAA
         yakuba  CTTGCGATGTGGCCTGAGTATTGCGCAATCTGTCGTCAAACA-------------------------GATAT-ACATATGTATGTA--------------TAGGTATATATCGGT-AGAA
         erecta  CTTGCGATGTGGTCTGAGCATTGCGCAATCTGTCGTCAAACAGCCGATCGATCCAGTTGGTGAAATCGATATGAGATGTGCATGCACTATAAGTTATAGCTGGATATGTGTGGATGAGAA
      ananassae  CTTGCCA-GCAAC---AAGATTGCGCAATCTGTCC----------------------TG--------GGCAT----------------------------TG---------------GAA
  pseudoobscura  CTTGGGCCAAAATCGAGGCATTGCGCAATCTGTCG-----------CTC-----------------------------------------------------------------------
     persimilis  CTTGGGCCAAAATCGAGGCATTGCGCAATCTGTCG-----------CTC-----------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  -------------------------------------------------AATTTGTGTA--------AATAT-AAATA----------------------TATACGTATGTATATGAGAG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGGTAAAGAATA-TCGGGGGCGTTTCGTGGATCTGCTCAGATGAATTCCTTCACCATCTG-TTGCATCTCGTGGATAATGC-------------CAGCAAAAATCCAGCAAAAACGA--T
       simulans  GGGTAAAGAAAA-TCGGGGGCGTTTCGTGGATATGCTCAGATGAATTTCTTCACCATCTG-TTGCATCTCGTGGATAATGC-------------CAGCAAAAA------------GA--T
      sechellia  GGGTAAAGAAAA-TCGGGGGCGTTTCGTGGATCTGCTCAGATGAATTTCTTCACCATCTG-TTGCATCTCGTGGATAATGC-------------CAGCAAAAA------------GA--T
         yakuba  GGGTAACGAAAAACGGGGGGCGTTACGTGGATCTGCTCAGATGAATTTCTTCACCATCTG-TTGCATCTTGTGGATGATGC-------------CAGCAAAAC------------TA--T
         erecta  GGGTAATGAAAA--TGGGGGCGTTTCGTGGATCTGCTCAGATGAAATCCTTCACCATCTG-TTGCATCTAGTGGATAATGC-------------CAGCAAAAG------------GA--T
      ananassae  GGGTAAAGGACCAAAGGGGGCGTTGCAAGGATCTG--------------GTGGTCAGCTG-TTGCAACATGTTGTTGA--------------------AAAAA------------AA--T
  pseudoobscura  -----------------------------------------------------------------------------------------------------------------------T
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  GAATTGATAACA-TCTAAG-CAGTTCACCAAGCTACTTTTAGAGATTCCGCTCGTAGCTGAATATGTCTCGTAG----TGCTAGATTTATGTGACAGTTA-----------------TAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRBBBBBBBB

                 
   melanogaster  ACATATATGGGATATGCAACGGATGGTCAATGACAAT--------TGATTTCACTACATTTGAA--TTTGCAATTCGTGTATTC---------GAAATC---AAACTATTTGTAA-----
       simulans  ACATATATGGGATATGGAACGGATGGTCAATGAAAAA--------TGATTGCACTGCATTTGAA---TTGCAATTCCTGTATTC---------AAAATC---AAACTATTTTGAA-----
      sechellia  ACAT-------ATATGGAACGGATGGTCAATGAAAAA--------TGATTTCACTGCATATGAA---TTGCAATTCGTGTATTC---------AAAATC---AAACTATTTTGAA-----
         yakuba  GTATATACTCGATATGAAATGGATTGTTAATCAA---------------------ACATTT------------TTCTATAGTTTGTTATTAGAGAAATC---AATCCATTTGGAA-----
         erecta  ATACATATGCCA---AAAATG--TTTTCAGT------------------------ACATGTGAA---TTGCAATTCCGTAATTC---------AAAATC---AATCTATTTGG-------
      ananassae  ACTTAAA----AAATCAAATT--TAATAAGTCTAAGAATTTGAGGAAATCTTTTTGAGGCTGAA--ACTAAATTTTGAAAATTCATTA-----AAAATTATAATACAATTTTTAT-----
  pseudoobscura  GCACATTTAAGACATTATAAAGATTTTGCATAACTAA--------GAAT------AAATTTGAACAAGTATAATTTTAGGTTTC---------TAAATC---AGAATATTCAGAGCCCTG
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  AGATATTTTGGATGCCCTAGGAAT-----ATCGAAAA--------TAGCTTTGACTCTGGGGAA--AATAAATTAATTATATTCT--------ATTATA---ATATTATTTGCCA-----
        Summary  BBBBMMMMMMMMBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBMMMMMMMMBBBBBBBBBBBRRRRRRRRMMMMMMMMBBBBBBBBRRRRRRRRBBBBBBBBBBMMMMMMMMBBBBB

                 
   melanogaster  --------GACTAAAGGTTAGATCCCAGAAAACAAA--AGCCAGTTCAACTTCTGCCAAAATCTACGATTGTGCAGAAGTCATAGA-------TAGTTAGCGATAGGGT-TCAGGGATTC
       simulans  --------GACCAAAGGTTAAATGCCATAAAACA-----------------------AAAGTCTGCGATTGTGCAGAAGTCATAGA-------TAGTTAGCGATAGG----TAGGGGTTC
      sechellia  --------GAGCAAAGGTTAAATGCCATAAAACAAA--AGCCAGTTCAACTTCTGCCAAAGTCTGCGA---TGCAGAAGTCATAGA-------TAGTTAGCGATAGA----TA--GGTTC
         yakuba  --------GACTAAAGATT--------------AGA--GCCTAGTTTAACT----------TCAGCGATTGTGTAGAAGTCAAAGATACATAGTAGTTAGCGATAGG----TAGAGGTTC
         erecta  ----------TTAGATATCCTACTCATATATAGAAA--ACCCAGTTCAGCTTATGCCAAAGTCAGCGATTGTGCCGAAGTCAAAGA-------TAGTTAGCGATAGG----TAGAGGTTC
      ananassae  --------GGTTAAAAATAAACTATAAACTAATAAATTGCATAATTTAAAACCTG--AAAATTAA-GATTATTTAAAA---AAAAA-------TAGGGGGGAATAAAGTCTTA---GTTA
  pseudoobscura  ACAAAAACGTTTCGATTTTGAATGCCATTTAATGAGCGGCACTTTCTGGTTCATT------TCTGAGACAGATCAGACGGATTAGA-------CTTTGACT---------------GAAG
     persimilis  --------------------------------------------------------------------------------------------------------------------GAAG
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  --------GAAAATGGTGTGGAT-------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRBBBMMMMMMMMBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGATACAAGCA----AAGATATACAAAGTCAATTGGC---GAAAAAA--CCCCGAAGATTA---------ATCTAATCTGCGACGAAGAAC-GGACCGAAGACGCTAGAAAGGCCAAAAT
       simulans  AGATACAAGAA----GAGATATACAAAGTCAATTGGC---GAAAAAA--CCCCGGAGATTA---------ATCTAATCTGCGACGAAGAAC-GGGCCGAAGACGCTAGAAAGGCCAAAAT
      sechellia  AGATACAAGAA----GAGATATACAAAGTCAATTGGC---AAAAAAA--CCCCGGAGATTA---------ATCTAATCTGCGACGAAGAAC-GGGCCGAAGACGCTAGAAAGGCCAAAAT
         yakuba  AGATACAAGAA----GAGATATACAAAGTCAATTGGC---GAAAAAA--CCCCGGAGATTA---------ATCTAATCTGCGACGAAGAAC-GGGCCGAAGACGCTAGAGAGCCCAAAAT
         erecta  AGATACAAGAA----GAGATATACAAAGTCAATTGGC---GAAAAAA--CCCCGGAGATTA---------ATCTAATCTGCGACGAAGAAC-GGGCCGAAGACGCTAGAGG--CCAAAAT
      ananassae  AAATAAAATAAAGTTAAAATAAATAAAGTCAATTGA----GAAAAAA--CCCGAGAGATTT---------ATTTAATCTGAGTTGTAGAAC-AGACCG------------GGCCCAAAAT
  pseudoobscura  AGATATAGGAA----TAAGTATACAAAGTCAATTGGC---GAGAAAAACCCCGGGAGATTAGGGTTTCGTGGCTAATCTCTGGGCAAGAGCAGGGGCAAAGACGATAGAAAGGCCAAAAT
     persimilis  AGATATAGGAA----TAAGTATACAAAGTCAATTGGC---GAGAAAAACCCCGGGAGATTAGGGTTTCGTGGCTAATCTCTGGGCAAGAGCAGGGGCAAAGACGATAGAAAGGCCAAAAT
        virilis  ------------------------AAAGGCAATTGCC---GAAAAAA--CCACAAGATTTA-------CCGTGTAATCTT------------GGAAAGTCTACAGCAGAGCGGGCAAAAT
     mojavensis  ------------------------AAAGGCAATTGCTGTAGAAAAAA--CCACTAGATTTA-------CGCTGTAATCTT------------GGAAAGTCTACAGCAGAGCGGGCAAAAT
      grimshawi  ------------------------AACGGCAATTGGC---GAAAAAA--ACCCTAGATTTA-------CCCGGTAATCTT------------GGAAAGCCTACGGCAGAACGGCCAAAAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATTTGCAGACAGTGAAAGGATTTAGATGCGAAAATCCCCATAAATCCAATTAACACAAATCTGCATAACGGGTT---------AAGG-T-----------------------TTAGG---
       simulans  ATTTGCAGACAGTGAAAGGATTTAGATGCGAAAATCCCCATAAATCCAATTAACACAAATCTGCATAACGGGTT---------AAGG-T-----------------------TTAGG---
      sechellia  ATTTGCAGACAGTGAAAGGATTTAGATGCGAAAATCCCCATAAATCCAATTAACACAAATCTGCATAACGGGTT---------AAGG-T-----------------------TTAGG---
         yakuba  ATTTGCTGACAGTGAAAGGATTTAGATGCGAAAATCCCCATAAATCCAATTAACACAAATCTGCATAACGGGTT---------AAGG-T-----------------------TTACG---
         erecta  ATTTGCAGACAGTGAAAGGATTTAGATGCGAAAATCCCCATAAATCCAATTAACACAAATCTGCATAACGGGTT---------AAGG-T-----------------------TTACG---
      ananassae  ATTTGCAGACAGTGAAAGGATTTAGATGCGAAAATCCCCATAAATCCAATTAACACAAATCTGCATAACGGGTT---------AAGG-G-----------------------TTAAGGGT
  pseudoobscura  ATTTGCAGACAGTGAAAGGATTTAAATGCGAAAATCCCCATAAATCCAATTAACATAAATCTGCATAACGGGTT---------GAGG-G-------------------------AAG---
     persimilis  ATTTGCAGACAGTGAAAGGATTTAAATACGAAAATCCCCATAAATCCAATTAACATAAATCTGCATAACGGGTT---------GAGG-G-------------------------AAG---
        virilis  ATTTGCAGACAGTGAAAGGATTTAAATGTG-AAAT-CCCATATATCCAATTTACAGAAAGCTGCATATCGGGCATTGCCTTTCAGTG-G-----------------------GAACG---
     mojavensis  ATTTGCAGACAGTGAAAGGATTTAAATGTG-AAAT-CCCGTAAATCCAATTTACAGAAAGCTGCATATCGGCCAATGCTTGGGAATG-GCTAAAGGGTAGAGGCTAGAGGGTAAAGG---
      grimshawi  ATTTGCAGACAGTGAAAGGATTTAAATGTGAAAAT-CCCATAAATCCAATTAACACAAAGCTGCATATCGGGGA-TGCTATACGATACGGTAAACGGTAAATGGTAACGG--CAACG---
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------------------CT-------------------AAAGGATTACGAGGCTCATGCC---------------------------------------GTGC-------------
       simulans  ---------------------CT-------------------AAAGGATTACGAGGCCCATGCC---------------------------------------GTGC-------------
      sechellia  ---------------------CT-------------------AAAGGATTACGAGGCCCATGCC---------------------------------------GTGC-------------
         yakuba  ---------------------CC-------------------AAAGGATTACGAGGCCCATGCC---------------------------------------GAGC-------------
         erecta  ---------------------CT-------------------AAAGGATTATGAGGCCCATGCCGT-------------------------------------GCGC-------------
      ananassae  TAACCAACCAAGCCCTAACAACTACAATTTTAAAGCAAAGGGAAAGGATTACG-TTTCTATCTT---------------------------------------TTTC-------------
  pseudoobscura  -----------------GCAATC-------------------GAAGGATTCCGAATCGTGAGGCAGTAGGCAGGAGCGCAAGAGCGCAGGAGCGCAAGGGTTAGGGT-------------
     persimilis  -----------------GCAATC-------------------GAAGGATTCCGAATCGTGAGGCAGTAGGCAGGAGCGCAGGAGCGCAGGAGCGCAAGGGTTAGGGT-------------
        virilis  ---------------------GT-------------------AACGGGTTAGGGATTTTATG-C---------------------------------------TGCC-------------
     mojavensis  ---------------------GT-------------------AACGGGTTAGGGTTTCCAGG-A---------------------------------------GACTAACCCAAGAGCGT
      grimshawi  ---------------------GT-------------------AACGGGTTAGGGTT-------A---------------------------------------GGGT-------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------AACCAGC------------------AAATTTCAATTGAA--TA--------------------CTTCTCGATCG----------CACTACCTGG-----------------
       simulans  ---------ACCCAGC-------------------AATTTCAATTGAA--TA--------------------CTTCTCGATCGC--------TCACTACCTGG-----------------
      sechellia  ---------ACCCAGC-------------------AATTTCAATTGAA--TA--------------------CTTCTCGATCGC--------TCACTACCTGG-----------------
         yakuba  ---------AGCCAAC-------------------CAATTCAATTGAA--TA--------------------CTTTTCGCTAG----------CGCTACCTGA-----------------
         erecta  ---------ACCCAAC-------------------AATTTCAATTGAA--TA--------------------CTTTTCGCTCG----------CACTACCTG------------------
      ananassae  ---------GCACAAA-------------------AATTTCAATTGAA--TG--------------------TTTCTGAGGAATA------ATTTCTACCTGA-----------------
  pseudoobscura  ---------ACCGAAAGGATTAGAACGGAATGCGAAATTTCAATTGAA--TAAGATTCCCATATACCTGTGACTCCTAGAGGGGAGGCTCGACTTCTATCTGT-----------------
     persimilis  ---------ACCGAAAGGATTAGAACGGAATGCGAAATTTCAATTGAA--TAAGATTTCCATATACCTGTGGCTCCTAGAGGGGAGGCTCGACTTCTATCTGT-----------------
        virilis  ---------ATATAAT-----------------GAAATTTCAATTGAA--GGTGACC---------------ATTTGTAGCCG----------AGTAGCATGTCTGATCTATCTTT----
     mojavensis  GCAATGCAAATTTAAT-----------------GAAATCTCAATTGAA--GGCGAACTA-------------AGTTGCTCCTG----------TCCTACCTGG-----------------
      grimshawi  ---------CTTCAAT-----------------AGATTATCCTGTGAACCGGCG------------------ATGTG--------------------------TTGATAAAAATTTGAGG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------CCAACGCCGA-----TTTGCATATATG--------------------------------------TAGATAT--ATATATATATGTACA-------------------TATA
       simulans  --------CCAACGCCGA-----TTTGCAT----------------------------------------------ATAG--ATATATGTATGTACA-------------------TATA
      sechellia  --------CCAACGCCGA-----TTTGCAT----------------------------------------------ATAG--ATATATGTATGTAAA-------------------TATA
         yakuba  -------------GTACA-----TATGCAAATAT------------------------------------------ATAT--ATATATATGTACATA-------------------TAGA
         erecta  --------------------------GCA----------------------------------------------------------------------------------------ATA
      ananassae  -----------------A-----CTTGAATATACTTTACTCTTTCTAACCCTATCTTTCTGTTCTTTTCTTACTAAAGGA--ATATATGATTGCGAA-------------------TATA
  pseudoobscura  --------CTCTCGCTCACACTCTCTGGCT----------------------------------------------GTTG--TTCTACATGTAC----------------------TGTA
     persimilis  --------CTCTCGCTCACACTCTCTGGCT----------------------------------------------GTTG--TTCTACATGTAC----------------------TGTA
        virilis  --CTTTAGCTGTTACTGC--------------------------------------------------------------TGATACACAGCC------------------------AAGA
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  CGACTTGTGAGTTGTTGG--------------------------------------------------------------CCATATATAGCTACCTGATCGATCGTGGTTCAGCCAAAAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBB

                 
   melanogaster  TTCATATATCTGACATTC-------TCGCTT--TCGGATTACCGCAG-------------ACGATCCC-TTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGATTATGCATTTATGGCA
       simulans  TTCATATATCTGACTTTCTC-----TCTCCT--TCGGATTACCGCAG-------------ACGATCCC-TTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGATTATGCATTTATGGCA
      sechellia  TTCATATATCTGACTTTCT------TCTCCT--TCGGATTACCGCAG-------------ACGATCCC-TTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGATTATGCATTTATGGCA
         yakuba  TGGATATATCTGGCC----------TCTCTT--TCGGATTACCGCAG-------------ACGATCCC-TTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGATTATGCATTTATGGCA
         erecta  TGGATATATCTAGCC----------TCTCTT--TCGGATTACCGCAG-------------ACGATCCCTTTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGATTATGCATTTATGGCA
      ananassae  TTTTCTGGTTTGACATTTT------CTGGTT--GTGGATTACCGCAG-------------ACGATCCC-TTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGATTATGCATTTATGGCC
  pseudoobscura  TATCTGTCTCCTTCCCTCT------CTGGTT--GCGGATTACCGCAG-------------ACGATCCC-TTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGATTATGCATTTATGGCC
     persimilis  TATCTGTCTCCTTCCCTCT------CTGGTT--GCGGATTACCACAG-------------ACGATCCC-TTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGATTATGCATTTATGG-C
        virilis  GGGGTG-------------AGAGCCTTGCTT--GCGGATTACCTCAGATTCT--------TTAATCCT-TTGACTTTTCCTGCTAAGCGATCATAAAACGTGGGTTATGCATTTATGGCC
     mojavensis  -------------------ACAACCTTGCTT--GCGGATTACCGCAGATCCT--------TTAAGCCT-TTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGGTTATGTATTTATGGCC
      grimshawi  GGGGTG-------------ACGTTGTTGCTTTGTTGGATTACCGCAGATCCTGTGATGCATTGATCCT-TTGACTTTTCCTGCTAAGCGATCGTAAAACGTGGGTTATGCATTTATGGCC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CCCCGC---------------------GGCAGCGT--------------CGAAACCAC--CCAGCCA--------CCCAC-----------T---CAACCACCG--------GCCAACCG
       simulans  CCCCGC---------------------GGCAGCGT--------------GGAAACCAC--CCAGCCA--------CCCAC-----------T---CAACCACCG--------GCCAACCG
      sechellia  CCCCGC---------------------GGCAGCGT--------------GGAAACCAC--CCAGCCA--------CCCAC-----------T---CAACCACCG--------GACAACCG
         yakuba  CCCCGC---------------------GGCAGCGT--------------CGAAACCAC--CCAGCCA--------CCCACC--GCCC---AT---CGCCCATCG--------CCAAACCG
         erecta  CCCCGC---------------------GGCAGCGT--------------CGAAACCAC--CCAGCCACCCACTCGCCCACC--GCCC---AC---CGCCCACCGCACACCGACCAAACCG
      ananassae  CCCCCT---------------------GGCAGGAG--------------CACAACCATAGACAGTCG--------TCCTGCATGTCCTGTTT---CACCCACAA--------GCCCACTC
  pseudoobscura  CCACACACACAGGCACACAGGCACACGGGCACACT--------GACCCACCGACCCAC--ACACTCA--------CCCAC-----------T---CAGCCACTC--------GCCCAC--
     persimilis  CCACACACACAGGCACACAGGCACACGGGCACACTGACCCACCGACCCACCGACCCAC--ACACTCA--------CCCAC-----------T---CAGCCACTC--------GCCCAC--
        virilis  CCA-GC----------------------------T--------------CCCACCCATCTCCAGTAC--------CCTTC-----------G---CTTTTCCCG--------TTCG-GAA
     mojavensis  CCC-GC----------------------------A--------------TCCACCCATCCATGGC-T--------GCTGC-----------C---CGGTCACAG--------TCTGAGCA
      grimshawi  CCCAGC----------------------------T--------------CCCACCCACTGCCACCAC--------CCATC-----------GGCATGGTCAACG--------CACCAACA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBB

                 
   melanogaster  AAAGCCTAACCCACAGG--------ACCTTTGGTC-AGAGGGTGCGGTTTAATCTGAGACCACCAAAAA---CCGATGGGATGGCCATATAGCTGCACTGCGAGAAAGTAGCAGTGATAA
       simulans  AAGGCCTAACCCACAGG--------ACCTTTGGTC-AGAGGGTGCGGTTTAATCCGAGACCACCAAAAA---CCGATGGGATGGCCATATAGCTGCACTGCGAGAAAGTAGCAGTGGGTT
      sechellia  AAGGCCTAACCCACAGG--------ACCTTTGGTC-AGAGGGTGCGGTTTAATCCGAGACCACCAAAAA---CCGATGGGATGGCCATATAGCTGCACTGCGAGAAAGTAGCAGTGGGTT
         yakuba  AAGAAGCAACCCACAGG--------ACCTTTGGTC-AGAGGGTGCGGTTTAATCCGAGACCACCAAAAA---CCGCTGGAATAGCCATATAGCTGCACTGCGAGAAAGTAACAGTGCGTT
         erecta  AAAACCCAACCCACAGG--------ACCTTTGGTC-AGAGGGTGCGGTTTAATCCGAGACCACCAAAAA---CCGATGGTATGGCAATATAGCTGCACTGCGAGAAAGTAACAGGGGGTT
      ananassae  A-----CCACCCAC-----------ATCCTTGACCAAAAGGGTGCGGTTTAATCCCAGACCACCAAAAA---------------CGAGGTAGCTACACTCAAAGAAA-------------
  pseudoobscura  ------TCGCCCACAGGGGCGACTCACCACCGACC-AG-GGGTGCGGTTTAATCCGAGACCAGGAAGAT---TTGAT-------------------------------------------
     persimilis  ------TCGCCCACAGGGGCGACTGACCACCGACC-AG-GGGTGCGGTTTAATCCGAGACCAGGAAGAT---ATGAT-------------------------------------------
        virilis  A---CCTTTCCAACTTG--------G-------TT----GGGTGCGGTTTAATCCGAGACCACCAAAGACACCGGATAATATGGTCGCAAGCCCGATTCGTAGGCAA--GCCGACCCGAT
     mojavensis  A---CTTCACCAACCTG--------G-------CT----GGGTGCGGTTTAATCCGAGACCACCAAAGA---------------------------------------------------
      grimshawi  A-----TATCGAACCGG--------GC------CT----GGGTGCGGTTTAATCCGAGACCACCAAAGA---------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRR

                 
   melanogaster  TCAAATGATGATGATGATGATCATAAATAATGATAATCAAATAGAAAGAGCAACTCTT----------TTATTCAAAATATATATA----ATTCAACTA--------------------T
       simulans  CGGCATTGCAAGAATG-----------TAATGATAATCAAATAGGAAGGGAAACTCTT-------------------ATATATTTA----ATTCAACTA--------------------T
      sechellia  CGGCATTGCAAGAATG-----------TAATGATAATCAAATAGGAAGGGGAACTCTT-------------------ATATATTTA----ATTCAACTA--------------------T
         yakuba  CGCCATGCCAAGAATGGCAAATGTCAAGAAATATAACTATTTATAAACTCATAGTTATATTTTCAATATAATGCAAATTATGCAAA----ATTTGGCAA--------------------T
         erecta  TGGCCT-----GATTATTTTTCTTCAATTAAATGAACTATTTATTAAGTGATACATTTATTTCCTATGTAATGCAAGGTATGCAAA----GTTTGAGGA--------------------A
      ananassae  --------------------------------------AAATATAAAGAAAATGTATT-------TTATTAAAAAAAATATATAAATATTATTCCAACA--------------------A
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  TGACAATATTCCGGTATTTAT---AAATAAATATACAAAAGTAAGCAAGGGAACGCCT-------AAC---GTTAATGTATGTATA----TGCTAGATA--------------------T
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------AAATAAAGATAATTAAATAGAAAAAGAAA--ACA-------AACTTGATTAAAATCTTCATA----TTCTAGAAAGTTCTTTGATTTATTTTGATT
        Summary  RRRBBBBBBBBBBBMMMMMMMMBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTATTAACAT-TATTAAAAGCACA-------TCTATTACGTTTCAATT--A--------------AAAATTTTATAATTATGTTTGATGATT----------------TCGAATAGATTA
       simulans  TTATTAACAC-TTT----------------------------------------------------AAA---------------------------------------TAGAATAGATTA
      sechellia  TTATTAACAC-TAT----------------------------------------------------AAACTTTATAATTATGTTTGATGATT----------------TCGAATAGATTA
         yakuba  TTGAATAAATCTAT-----------------------------TAACT--A--------------ATAACTTCCCAATTATGTTAAAAAAATTAAC----------TATTAACTACCCAA
         erecta  ATATATACATATAT----------------------------GTAAAT--A-----------TATATAAAATTCAGAT----TTGAAACATCTTGC----------TAAGGTATAATGCA
      ananassae  CTAAATATTT-TAT--AAAAAAGA-------TAAACTATTAAATAAAT--AAATGTTTAAAGTAAAAAATATTTCCATTTTGACGGACAAACGGACACGCGGACAGTTTCAAGTAGCTCT
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  GCAGTCGCAT-TGT---GGACAAC-------ACAACAGATGTGGAATT------------------AGAAGT------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ATTATTAAAA-TGG---AAACACCCATTTCTATAATTAAGATACAATTTTA--------------ATGAAGTTGAAATTATATTTATTTATC----------------TAAAATCAGTTA
        Summary  BBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBMMMMMMMMBBBMMMMMMMMMMMMMMMMRRRRRRRRBBBMMMMMMMMBBBBBBBBBBBBBBBBB

                 
   melanogaster  CATT-AAAAACAATGCTAATACAAATTAAGTAAAAAAAT---------TAATAGA--AAC----------CAAAATCCACTCTGGTTTCTCTCAGTG--------CAGCGAAGAGATGTC
       simulans  CTTTAAAAAACATTGCTAATACAAATTAAGT--AAAAAT---------TTATAGA--AAC----------CAAAAGCCACTCTGGCTTCTCTCAGTG--------CAGCGAAGAGATGTC
      sechellia  CTTTAAAAAACATTGCTAATACAAATTAAGT--AAAAAT---------TTATAGA--AAC----------CAAAAGCCACTCTGGCTTCTCTCACTG--------CAACGAAGAGATGTC
         yakuba  TTTTAAAA-TGATTTCTTATACGAAAGAAGT--ACGAA----------TGATAAG--AAG----------CGAAAGCCAAGCTGGTTTCTCTCAGTGCAGCCAGCCAGCCAAGAGATGTC
         erecta  TGGAATGA-TCATCTCTAGTACGAAAGAAGT--ACAAG----------TGCTGAA--GAG----------CGAAGGCCAGTCTGGTTTCTCTCAGTG----CAGCCAGCCAAGAGCTGCC
      ananassae  GATCCAAA--AAATACCTATCCTTTAAGACT--AAAAATATCTCTACCTCATAGCCTAACATATTTTTCACCAAAATCACTATCATTTCTCTCAGTGCCCGAGAAAAGAAAAGGAAAATT
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  AATAAAAA-ACAATTTTAAGCAAAAAATAGAAAACGAAT---------TAA---------------------------------------------------------------------
        Summary  RRRRRRRRBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GC--ATTAATCCGCCAAAGGACCGCGATCAGGATCAAGAATCAATAATTACGATTCAGGCGTAACCGAGTC-GGGGGCTAGGTAGCAAAACA---AAACGGGGTAATCCTGA----CTCC
       simulans  GC--ATTAATCCGCCAAAGGACCGCGATCAGGATCAAGAATCAATAATTACGATTCAGGCGTAACCGAGTC-GGGGGCTAGGTAGCAAAACA---AAACGGTGTAATCCTGA----CTCC
      sechellia  GC--ATTAATCCGCCAAAGGACCGCGATCAGGCTTAAGAATCAATAATTACGATTCAGGCGTAACCGAGTC-GGGGGCTAGGTAGCAAAACA---AAACGGTGTAATCCTGA----CTCC
         yakuba  GC--ATTAATCCGCCAAAGGACTGCGATCGGGATCAGGAATCAATAATTACGATTCAGGCGTAACCGAGTC-GGGGGCTAGGTAGCAAAACA---AAACGGGGTAATCCGGA----CTT-
         erecta  GC--ATTAATCCGCCAAAGAACTGCGATCAGGATCAAGAATCAATAATTACAATTCAGGCGTAACCGAGTC-GGGGGCTAGGTAGCAAAACA---AAACGGGGTAATCCTGA----CTTC
      ananassae  GCAAATTAATCTCACAGAAGGCAGTCATCAG------GAATCAATAATTACAATTCAGGCGTAACCGAGTCAGAGGGCTAGGTAGCAAAAC----ATACTTGGTAATCCT------CGAC
  pseudoobscura  -----------------AGATCAGGGATCAGG-----GAATCAATAATTACGATTCAGGCGTAGCCGAGTC-AGGGGCTAGGTAGCACAACATTCCCTCCCGGTAATCCTCACCAGCTCC
     persimilis  -----------------AGATCAGGGATCAGG-----GAATCAATAATTACGATTCAGGCGTAGCCGAGTC-AGGGGCTAGGTAGCACAACATTCCCTCCCGGTAATCCTCACCAGCTCC
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CAGCCCTTCTTCGTCCGCCCTT-CG-GGATTAGTGGCGATCCA-GCG-AGAAATCCC-----------GCAGATGAGAAGCTTTG-----------ATGCGACGAAGTCAAAACTTTTCC
       simulans  GAGCCCTTCTTCGTCCGCCCTT-CG-GGATTAGTGGCGATCCA-GCG-AGAAATCCC-----------GCGGATGAGGAGCTTTG-----------ATGCGGCGAAGTCAAAACTTTTCC
      sechellia  GAGCCCTTTTTCGTCCGCCCTT-CG-GGATTAGTGGCGATCCA-GCG-AGAAATCCC-----------GCGGATGAGGAGCTTTG-----------ATGCGGCGAAGTCAAAACTTTTCC
         yakuba  -----------------------CG-GGATTAGTGGCGATCCA-GCG-AGAAATCCC-----------GCGGATGAGGAGCTTTG-----------ATGCGGCGAAGTCAAAACTTTTCC
         erecta  G------CCCTCGTCCGCCTATCCG-GGATTAGTGGCGATCCA-GCG-AGAAATCCC-----------GCGGATGAGGAGCTTTG-----------ATGCGGCGAAGTCAAAACTTTTCC
      ananassae  GGATCGTATCCTGGCGATTC---CA-GGATTACCGTCGATCCACCCG-AGAAATCCC-----------ATGGATAAGGAGCTTTG-----------ATGCGTCGAAGTCAAAACTTTTCC
  pseudoobscura  GCTCCGCTACGCTTCGCTCCTGGCGTGGATTAGCGGCGATCTA-GTGCAGAAATCCCCAGGCGCGGGTGAGGATGAGGAGCTTTGGGTGTCGCTAAATGCACAGAAGTCAAAACTTTTGT
     persimilis  GCTCCGCTACGCTTCGCTCCTGGCGTGGATTAGCGGCGATCTA-GTGCAGAAATCCCCAGGCGCGGGTGAGGATGAGGAGCTTTGGTTGTCGCTAAATGCATAGAAGTCAAAACTTTTGT
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGCTTAAGCCCAGCTTAGTTGCTA----------------------------------CTCCACAA--------------TCTACCTGACATCG-------CTGATCTGCAGATTCGCTG
       simulans  AGCTTAAGCCCAGCTTAGTTGCTA----------------------------------CTCCATGA--------------TCTACCTGACATCG-------CTGATCTGCAGATCCGCTG
      sechellia  AGCTTAAGCCTAGCTTAGTTGCTA----------------------------------CTCCATGA--------------TCTACCTGACATCG-------CTGATCTGCAGATCCGCTG
         yakuba  AGCTTAAGCCCAGCTTAGTTACTCA--------------------------------TCTCTGTGGATAGAGTATTGATCACTACCTGACATCG-------CTGATCTGGTGATCTGCTG
         erecta  AGCTTAAGCCCAGCTTAGCTGCTC----------------------------------CTCCATGG--------------CCTACCTGACATCG-------CTGATCTGCAGATCAGCTG
      ananassae  AGCTTAA-CCCAGCTTAGGCATCTAGCCGAGAGTCCCCCTCTGAATCCTTCAGAATCCTTCCATGC--------------CCATCCTTACCTTATCCTTACCTGGCCTGGA------CTG
  pseudoobscura  GATCTCTACCTGAATTGTCTGAAT----------------------------------CGTCTGAA--------------TCCCCGTGATCCTGCTC----CTGATC--CTGATCCGCGC
     persimilis  GATCTCTACCTGAATTGTCTGAAT----------------------------------CGTCTGAA--------------TCCCCGTGATCCTGCTC----CTGATC--CTGACCCGCGC
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATCCCACGCCT-------------------TGTTTGGTGG--GCTCGTCGCGGCTAATCAATTGATTATCGCCACGGATCGG---TT--GAGAATGGATC-AAGTTGGTT-------GAG
       simulans  ATCCCACGCCT-------------------TGTTTGGTGG--GCTCGTCGCGGCTAATCAATTGATTATCGCCACGGATCGG---TT--GGGAATGGATC-GAGTTGGTT-------GAG
      sechellia  ATCCCACGCCT-------------------TGTTTGGTGGCTAATCGTCGCGGCTAATCAATTGATTATCGCCACGGTTCGG---TT--GAGAATGGATC-GAGTTGGTT-------GAG
         yakuba  ATCCCACGCCT-------------------TGTTTGGTGG--GCTCGTCGCGGCTAATCAATTGATTATCGCAACGGATCGGTTTTT--GGGAATAGATC-GCGTTGCTT-------GAG
         erecta  ATCCCACGCCT-------------------TGTTTGGTGG--GCTCGTCGCGGCTAATCAATTGATTATCGCA------------TT--GAGA------------TGGCT-------GAG
      ananassae  ATCAC-CTTTT-------------------TGTTTGGTGG--GCTCGTCTCGGCTAATCAATTGATTATCGCCACGGATCCG---AT--CGGATCGCATC-GGATTATAT-------CAG
  pseudoobscura  AAGACACTTCGACCGACAGTTGTTTGTGTCTGTTTGGTGG--GCTCGTCCTGGCTAATCAATTGATTATCGCCATGGATTGA---ATCGGGGATTGAATCAGGATTGGGTGGGGTAAGGG
     persimilis  AAGACACTTCTAACGACAGTTGTTTGTGTCTGTTTGGTGG--GCTCGTCCTGGCTAATCAATTGATTATCGCCATGGATTGA---ATCGGGGATTGAATCAGGATTGGGT-------GGG
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------TGTTTGGTGG--GCATGTTGCTGCTAATCAATTGATTA-----ACAAAGCAT---TT--GGGGATCGAAA-GAGGTG--T-------AAC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AT-------------------------------------CTCTTAGCTGGAGT-------CACTTCCTCAAAATAGATTAGTCA-ACAATTTTCACAATATTTTGAG-------------
       simulans  AT-------------------------------------CTCTTAGCTGGAGT-------CACTTCCTCAAAATAGATTAGTCT-TCAATTTTCACAATATTTGGAG-------------
      sechellia  AT-------------------------------------CTCTTAGCTGGAGT-------CACTTCCTCAAAATAGATTAGTCT-TCAATTTTCACAATATTTGGAG-------------
         yakuba  AT-------------------------------------CGCTTAGCTGGAGT-------CACTTCCTCAAAATAGATTAGCCA-TCAATTTGCACAATATTTTGAG-------------
         erecta  TA-------------------------------------CTCCTAGCTAAAGT-------CACTTCCTCAAAATAGATTAGCAATTCAATTTGCACAATATTTGGAG-------------
      ananassae  AT-------------------------------------TGGATGGGTGGGAT-------------------------------------------------------------------
  pseudoobscura  GTAAGGGGAAGGACAGGAAAGGTTGACTGTTTGTGTAGGCTTGAGACTGGATTTGGATTCAAATCCCACCGAAAAGATTAGCAT-------TGCACAATGTTTGTGG-------------
     persimilis  GTAAGGGGAAGGACAGGAAAGGTTGACTGTTTGTGTAGGCTTGAGACTGGATTTGGATTCAAATCCCACCGAAAAGATTAGCAT-------TGCACAATGTTTGTGG-------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  -------------------------------------------------------------------CT------------------TTAATATATATTTATTCGAAATTAATTTTTTAA
      grimshawi  GC-------------------------------------CTAATTCCTGAGGC-------AGTTGCCAT------------------AGATTGTGCACTTTT---ACATTGATTT-----
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -AGATTTG---CAAACATCCAGGCGACACTCAG-TTCACTGCTTCCGATTTATTGG---------AATGTGCATATATCATTAAAAAGCGGT-------------AAA--ATCT------
       simulans  -AGATTTG---CAAACATCCAGGCGACATTCAG-TTCACTGCTTCCGATTTATTGG---------AATGTGCATATATCATTAAAAAGCGGC--TTTG------GTAA--ATCT------
      sechellia  -AGATTTG---CAAACATCCAGGCGACATTCAG-TTCACTGCTTCCGATTTATTGG---------AATGTGCATATATCATAAAAAAGCGGC--TTTG------GTAA--ATCT------
         yakuba  -AGATTTAC--CAAACATGCCGGCGACTTGCAG-ATCACTGCTTCCGTTTTAGTGGCGACTAAGTAAGGGGTATGCGTT----AAATGCATC-------------TAT--CACTAAGAGG
         erecta  -AGATTTA---CAAACATCCAGGCGACATTCAG-AACACTGCTTCCGTTTTAGTGGCGACTAATTAATGGGTATGGGTT----AAAATCAT--------------------ACT------
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  -AGATTTGTGACGAGAACCCA----ACCTTTCT-CTGAAAGTTCTTCCTTTTCTGG---------ATGTTCTTCATATC----AGAGACTTTCCCTTGATGTGTACAA--ATAT------
     persimilis  -AGATTTGTGGCGAGAACCCA----ACCTTCCT-CTGAAAGTTCTTCCTTTTCTGG---------ATGTTCTTCATATC----AGAGACTTTCCCTTGATGTGTACAA--ATAT------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  AAGATCAT---AAATAATCTAA---TTTTTAAATGTTATTATTTGCGAAGTAATTG---------AAAACGCATACATCATA-AAGAACGGT------------TGGA--ATTC------
      grimshawi  -AAACTTC---AAATTTTCCGA---GGAATCAA-GTCAATAATTCC-----AGTTG---------CAGTTGCCACTTTCATG-TCAAGCATT------------CAAATGATGA------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBB

                 
   melanogaster  TATAATTGGTAACATTTTAATTG---------AATTTCTTA---------GTTATATATCCAGGCATATATTGGGCTCCA-TTACTTTACATCAAAACCTTAT--GT----GGCCCATAA
       simulans  TATAATTGGTAACATTTTTATTG---------AATGTCTTT------TTGTTTATATATCTAGACATATTTTGGGCTCCATTTACTTTACATCAAAACCTTAT--GT----GGCCCATAA
      sechellia  TATAATTGGTAACATTTTTATTG---------AATGTCTTT---------TTTATATATATAGACATATTTTGGGCTCCATTTACTTTACATCAAAACCTTAT--GT---GGGCCCATAA
         yakuba  GTTTTTTTTTGGCAATTTGATTG---------AATATTTTA---------ATTTGTTTTCCAGA---AGTCTGTGCTCCA-TTACTTCACATCACAGCCCTAC--GT----GGCCCATAA
         erecta  GCTTGTTTAT----ATTTGGGTG---------CATA---TA---------ATTTGGGTTCCCGA---AGTTTGTGCTCCA-TTAGTGTGAATCAAAACCTTACATGT----GCCCCATAA
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ACACTTTGCTATGATCTTCTTTG-----------CCTATTT---------CTCAGCTATTTAGC-----TCTGGGCTCCT----CCTTCGGACACTTCTTCAG--AT----CTTTCTTCA
     persimilis  ACACTTTGCTCTGATCTTCTTTG-----------CCTATTT---------CTCAGCTATTTAGC-----TCTGGGCTCCT----CCTTCTGACACTTCTTCAG--AT----CTTTCTTCA
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  TATTAAAAGCAAAACAATCAATG----AAATG-ATTTCTTA---TATAGAGTTTTATATGTATAGTCA-------------TGACTTCAAA-----------------------------
      grimshawi  TCTTCGAATTTCCACATTCCACATTGTAATCG-ACTTTTTAATGTATATATTTGAGTATATATATATA-------------TATCTTCTTGTGAAGAGCTCAT--GCTTTGAGCTTAGAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRR

                 
   melanogaster  AAACT------GCCGACTTTTCTTCCATTGCGAT------------------------------TT---TCCCAACTTGACATGACCTAGTGGTGCA---AAAAAAGTGGGCGTGACGTT
       simulans  AAACT------GCCGGCTTTTCTTCCATTGCGAT------------------------------TT---T-CCAACTTGACATGACCTAGTGGTGC----AAAAAAGTGGGCGTGACTTT
      sechellia  AAAAC------GTCGGCTTTTCTTCCATTGCGAT------------------------------TT---T-CCAACTTGACATGACCTAGTGGTGC-----AAAAAGTGGGCGTGACGTT
         yakuba  AAA---------------------CCATTGCGCT------------------------------TT---T-CCAACTTCACTTGACCTAGTGGTGC----AATAAAGTGGGCGTGCCGCT
         erecta  AAA---------------------CCATTGCGAT------------------------------TT---T-CCAACTTCACTTGACCTAGTGGTGC----AAAAAAGTGGGCGTGTCGCT
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  AAGATCTGGCATCTGACTCTCCTCCCACTCAGAGAGACAGACAGACAGACAGACAGACAGACACTC---C-CCCATCTCACTTGACCTACTGGCAGGAATAAAAAAGGGGGC--------
     persimilis  AAGATTTGGCATCCGATTCTCCTCCCACTCAGAG----------------AGACAGACAGACTCTC---C-CCCATCTCACTTGACCTACTGGCAGGAATAAAAAAGGGGGC--------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  A------AATATCTGAATTCATGCCAAGTACAAA------------------------------TCGTAT-CCCATTAAAAATGG-GGAGTGGC------AAAAAAGTGGGC--------
        Summary  RRRBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBB

                 
   melanogaster  GCGTGGGCGTCGAAT----------AGATATGGGTATAGTGGGAAC-TTTCCTTGCT----GTTGCTGTCGAC----TTTTTGCTAATTGATTATGC-GGCGACGTTGTGGCCCAAGGAC
       simulans  GCGTGGGCGTCGAGT----------AGATATGGGTATAGTGGGAAC-TTTCCTTGCT----GTTGCTGCCGAC----TTTTTGCTAATTGATTATGC-GGCGACGTTGTGGCCCAAGGAC
      sechellia  GCGTGGGCGTCGTGT----------AGATATGGGTATAGTGGGAACATTCCCTTGCT----GTTGCTGCCGAC-----TTTTGCTAATTGATTATGCGGGCGACGTTGTGGCCCAAGGAC
         yakuba  GGGTGGGCGTCGAGTCGATGGGAATAGGGATAGGGATAGTGGGAAC-TTTCCTTGCTGTTGGTTGCTGCCGAC----TTTTTGCTAATTGATTATGC-GGCGACGTTGTGGCCCAAGGAC
         erecta  GTGTGGGCGTCGAGT------------AGATTGGGATTGTGGGAAC-TTTCCTTGCT----GTTGCTGCCGAC----TTTTTGCTAATTGATTATGC-GGCGACGTTGTGGCCCAAGGAC
      ananassae  -----------------------------------------------------------------------------TTTTTGCTAATTGATTACCC-GGCGTCTTGGTGGCCCAAGGAC
  pseudoobscura  -----GGCGTAGCGT---------------------GAGGCAGAAC-TTTCCTTGGC----CCGGC--CTGGCTCCTTTTTTGCTAATTGATTATGC-GGCGACGCTGTGGCCCAAGG--
     persimilis  -----GGCGTAGCGT---------------------GAGGCAGAAC-TTTCCTTGGC----CCGGC--CTGGCTCCTTTTTTGCTAATTGATTATGC-GGCGACGCTGTGGCCCAAGGAC
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAGAACC-------AGAACAAGAGCAAGGACACGGAC---------------------TCGAAGAGCCAGGAGGCGCAAGGGGATTGTTTCTGCAAAGGAGGCTAGTTTGGC-GATGGGT
       simulans  AAGAACC-------AGAACAAGAGCAAGGACACGGAC---------------------TCTAAGGGCCAGGAGGCGCAAGGGGATTGTTTCTGCAAAGGAGGCTAGTTCGGC-GATGGGA
      sechellia  AAGAAAC-------AGAACAAGAGCAAGGACACGGAC---------------------TCTAAGGGCCAGGAGGCGCAGGGGGATTGTTTCTGCAAAGGAGGCTAGTTCGGC-GATGGGA
         yakuba  AAGAGCC-------AGAACAAGAGCAAGGACAAGGACTCGAGGAGCAAGGA-------GCCAGGAGCCAGAAGGCGCAATCGGATGGCTCCTGCAAAGGAGACTAGTTCGGT-GATGGCA
         erecta  AAGAACCAGAGTCAAGAACAAGAGCAGGAGCAAGAGCAGAAGGAGCAAGGACAAGGACTCGAGGAGCCAGGAGGCGCAAGGGTATTGTTCCTGCAAAGGAGCCTGGTTCGGC-GAGGGAA
      ananassae  AACGGGA-------AGGACTAG-GCGGGGGCA--------------------------GTAGGGAGCCGGGAATCCCACAGGAA------------------------------------
  pseudoobscura  ----ACA-------AGAACAAGAACAAGGACAAAAGC---------------------TGCAAA---CAGGAGACC------------------------GGCCAGACCGGTAGACAGGG
     persimilis  AAGAACA-------AGAACAAGAACAAGGACAAAAGC---------------------TGCAAA---CAGGAGACC------------------------GGCCAGACCGGTAGGCAGGG
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ACGGGGCAGGGTGGAACAGCAAGGGGAGGGACTGGGCT-----GGGCAGACGGTCTTCGAGTCTAGTTGACTTCAGCATTGTCATAAATCTT--------CGGTAGCCAAAAGAGCCAAA
       simulans  ACGGGGGAGGGTGGGACAGCAAGGGGAGGGTCTGGGCT-----GGGCAGACGGTCTTCGAGTCTAGTTGACTTCAGCATTGTCATAAATCTT--------CGGTAGCCAAAAGGGGCAGA
      sechellia  ACGGGGGAGGGTGGGACAGCAAGGGGAGGGACTGGGCT-----GGGCATACGGTCTTCGAGTCTAGTTGACTTCAGCATTGTCATAAATCTT--------CGGTAGCCAAAAGGGGCAGA
         yakuba  GCGGAG-AGGGTGGGCCAGCAAGGGGAGGGACTGGGCTGGGTAGGGCAGACGGTCTTCGAGTCTAGTTGACTTCAGCATTGTCATAAATCTT--------CGGTAGCCAAAAGGGCCAGA
         erecta  AC-----------GGCAAGCAAGGGGAGGGACTGGGCT-----GGGCAGACGGTCTTCCAGTCTAGTTGACTTCAGCGTTGTCATAAATCTT--------CGGTAGCCACAAGGGCCAGA
      ananassae  -------------GGAAGGAAGGTGGAG---CCGG--------GGGCAGACAGTCTTCAAGTCTAGTTGACTTCAGCGATGTCATAAATCTTGGCCAGACCAAGAGCCTCAAGGAGCAGA
  pseudoobscura  GCAG--------------GGAAGGGCAGTGGCAGGGAA-----GGGCAGACAGTCTTCAGGTCTAGTTGACTTCAGCATTGTCATAAATCTT--------C----GCCAA------CGGA
     persimilis  GCAGGGCAGT--------GGCAGGGCAGTGGCAGGGAA-----GGGCAGACAGTCTTCAGGTCTAGTTGACTTCAGCATTGTCATAAATCTT--------C----GCCAA------CGGA
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGGGCGGA----------GGGAGGAGG---GAGGAGG--------------------GTATCGG----------GACAAGGAGG-----AGACTGCCAGTACGAGACAG-GCTCCT----
       simulans  GGAGCCAAA---------GGGCGGAGG---GAGGAGG--------------------GAATCGG----------GACAAGGAGG-----AGACTGCCAGTACGAGACAG-GCTCCT----
      sechellia  GGAGCCAAAG--------GGGCGGAGG---GAGGAGG--------------------GAATCGG----------GACAAGGAGG-----AGACTGCCAGTACGAGACAG-GCTCCT----
         yakuba  GAAGCCAGAGGAGCCACAAGGGGCAGA---AGGTAGGATGAAGGATGAAGGATGAAGGAGGGGG----------GACAAGGAGGAGGGGGGACTGCCAGCACGAGACAG-GCTCCT----
         erecta  GGAGCCGCAG--------AGGGGCAGA---GCGAAGG--------TGCCAGGCGGGTGAGGTGG----------G-TGAGGAGG-GAGGAGACTGCCAGCACGAGACAG-GCTCCT----
      ananassae  GAGGAGGACGGCA-----AGGCGGAGAAACGGAAAGG--------------------GAGGTGGCCATAAGGGCGGCAAGGAAG-GCGGGGCGGGGCAGCACGAGGCCG-GCTCCTTGTT
  pseudoobscura  GGAGCTACCCG-------AAGGGCGGG---GAAAAGG--------------------------G----------CAGAAGAGAG-TGCTCCTCTGGCAGCACGAGACAGTGCTCCTCCTT
     persimilis  GGAGCTACCCG-------AGGGGCGGG---GAAAAGG--------------------------G----------CAGAAGAGAG-TGCTCCTCTGGCAGCACGAGACAGTGCTCCTCCTT
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRR

                 
   melanogaster  ---------------------------------------------CGTTGTTGCCCTGCTTGCCTCAATATAATTGTATCTTCCGTTTCATTACATGTTGCCCAGAAGT-----------
       simulans  ---------------------------------------------CGTTGTTGCCCTGCTTGCCTCAATATAATTGTATCTTCCGTTTCATTACATGTTGCCCAGAAGT-----------
      sechellia  ---------------------------------------------CGTTGTTGCCCTGCTTGCCTCAATATAATTGTATCTTCCGTTTCATTACATGTTGCCCAGAAGT-----------
         yakuba  ---------------------------------------------CGTTGTTGCCCTGCTTGCCTCGATATAATTGTATCTTCCGTTTCATTACATGTTGCCCAGAAGTC----------
         erecta  ---------------------------------------------TGTTGTTGCCCTGCTCGCCTCAATATAATTGTATCTTCCGTTTCATTACATGTTGCCCAGAAGTC----------
      ananassae  ---------------GGGCTTCCACTTAGCCAGTGTTGTTGCTTCTGTTGCTGGTCTGGTTGCCTCAATATAATTGTATCTTCCGTTTCATTACATGTTGCCCCAAAGTT----------
  pseudoobscura  CTCCTTCTCCTTCTACTCCTTCTACT-------------------CCTTGGTGTTGTTGTTGCTTCAATATAATTGTATCTTCCGTTTCATTACATGTTACCCCAGAGAGCCAGAGAGTC
     persimilis  ---------------CTCCTTCTACT-------------------CCTTGGTGTTGTTGTTGCTTCAATATAATTGTATCTTCCGTTTCATTACATGTTACCCCAGAGAGCCAGAGAGTC
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  -------------------------------------------------------------------ACATAATTGAATCTTCCGTTTCTTCAAATGTGACACA----------------
        Summary  RRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----------GCGGCTG--GTACCCTGTAA---------AGCCCAA----CTTGGGCATACTCGATTTTGATGTATTCTAAAATATTTA-------ATAGT----TA-------------
       simulans  ----------GCGGCTG--GTACCCTGTAA---------AGCCCAA----GTTGGGCATAATCGACTTTTATGTATTCTAAAATATT----------TAGT----TA-------------
      sechellia  ----------GCGGCTG--GTACCCTGTAA---------AGCCCAA----GTTGGGCATAATCGATTTTTATGTATTCTAAAATATT----------TAGT----TA-------------
         yakuba  ----------CCAGCCG-CATACCCTGCAA---------GGCCCAA----GTGGGGCATATGCGATTGGTATGTATTTTGAAGTAAT----------TTCT----TA-------------
         erecta  ----------CCAGCCG-CATACCCTGTGT---------GGCCCGA----GTGGGGCGTATACGATTGCTGTGCATTTTAAAATATT----------TATC----CA-------------
      ananassae  ---------ACCATTTGCCATACCCTCTAA----------------------------------------------TATAAAATATT---------AGGTT----TA-------------
  pseudoobscura  CCGGTCCCAGTCAGATG--ATACCCAGTGC--------CAGCCAGGGAGTGTCGGGCATAGGGGATGCGTTTGCTTATCAAAATAATCAATGGGATACAGT----TGGATGAACTTGAAG
     persimilis  CCGGTCCCAGTCAGAGG--ATACCCAGTGCCAGAGAAGCAGCCAGGGAGTGTCGGGCATAGGGGATGCGTTTGCTTATCAAAATAATCAATGGGATACAGT----TGGATGAGCTTGAAG
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ---------------------------------------------A----ATTAAACCTAGCTTATTTTAGTATATTAGAAAATATA----------TGTTATTATA-------------
      grimshawi  -----------------------------------------------------------------------------CCAAAACAAA----------TATT----TA-------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -ATATTCC-AATT---GTTTGTA---TT-GTAACAAACTACTTGTTCACTTA-----CGAATAATACTG-ACAAA-------TCAGGAACAAC-------AACTTTTT------------
       simulans  -ATATTCC-AATT---GTTTGTA---TT-GTAACAAGCTACTTATTCACTTA-----CGAATAATACTG-ACAAA-------TCAGGAACAAC-------AACTTTTT------------
      sechellia  -ATATTCC-AATT---GTTTGTA---TT-GTAACAAGCTACTTATTCACTTA-----CGAACAATACTG-ACAAA-------TCAGGAACAAC-------AACTTTTT------------
         yakuba  -ATCTTTC-CAAT---ATTTGCT---TT-------AATTTATAATCTACATT------------TAATG-TCAAT---------------------------CTTTAG-----TGCTTAT
         erecta  -ATCTTCCAAAAT---ACTTGCA---TT-----CAAATTTATAACCCAAACGAA---CAAACAATACTG-ACAAT-------TCAGGAATATT-------TGCTGTAGAAGAATTTGTAA
      ananassae  -ATTTTCT-AAATAAGGATGGTA---TTTAAAAAAAAAAACATATTCCTTTGAAAGTCGGTTTTTTTTT-TTAATATATTCTTCGTAAAAAAA-------AACTATAT-----------A
  pseudoobscura  CACTTTAA-AAGT---GTTTGTT---TC------------TTTGTTTCCTTGGCGTTCTACAAGAATTGAATGAA-------TTGGCGGTCGA-------CACTCCAT----GTCTACAG
     persimilis  CACTTTAA-AAGT---GTTTGTT---TC------------TTTGTTTCCTAGGCGTTCTACAAGAATTGAATGAA-------TTGGCGGTCGA-------CACTCCAT----ATCTACAG
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  -TTATTTT-AATT---ATTAAATTGATT-GTAACAAA------------TTA---------TAAAATGT-GAGAG-------TCG---------------AAAATTAT----ATATATAT
      grimshawi  -CAATTTT-GTCT---ATTAGTT---TT-GTAA-----------------TG---------CAGAACTT-AAGAT-------TTATCGACAAACCCTGACAAACTCGA----ATTTCCAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTTTTATTTAAGCCCATAACAAATTGTATGTTTATTTGAACAATATTAAAAAAAGTCTT-----AACAATT----TT-TGACACATAGTAAAATATATCTGAAACTCAGAAA
       simulans  CTTTTATTTAAAC--------------------------------------------------------------------CACTTAGTAGTA-ATATCTGAAACTCAGAAA
      sechellia  CTTTTATTAAAACCCATACCAAATTGTATGTTTATTTGAAC-----------AAGTCTT-----AAATATC----TT-TTACACATAGTAGTA-ATATCTGAAACTCAGAAA
         yakuba  CTTTAATTTAATGCTATACCAAATTTCATATTTATTTGAAGATATCTAGAATAAATATTATAGTAACAATA----TT-TTGAACATAGAAGCA-ATATGTGAAATTCCGAAA
         erecta  CTTCAATTTAAAGGCATGCCGAATTTCATATTTATTTG--------------------------AACAACA-------TTACACATAGTAGCA-ATTTGTGCACTTCCGAAA
      ananassae  AATTTGTTTGAAAATCTTTTATATTTTAGATTT-TTAGAATATTTTTCAAAAATATTTTA----AACAATAAAGTTT-GTAAAAATAAAAAAATAAATTTTAAATT---AAA
  pseudoobscura  ATCTCTTTGGAATGTGTATCAAAAT---------TTCCAGGGATTTTCATGATTATATT-----AACACTG----TTAGCAGAGATACAACTA-GTCCCCTAATCTGATTAA
     persimilis  ATCTCTTTGGAATGTGTATCAAAAT---------TTCCAGGGATTTTCATGATTATATT-----AACACTG----TTAGCAGAGATACAACTA-GTCCCCTAATCTGATTAA
        virilis  ----------------TAACAATCTGCAAGTTTACTTAAGATATCTTGAAAAAA--A-------AACT------------------------A-ATTTTATA---CAAAAAG
     mojavensis  ATTTTTTTT---TTTATAATTAAATGC--GCTAAATAAACAAATAGTAATAAAACTC-------AGCT------------------------A-CTCTTGTAAATCAATAAT
      grimshawi  ATCTTATTTTCCTTTGTAACTAATTTTAAACTAACTGGA---ATTTTGATAATAATT-------GACG--------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMMMMMMBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRR


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