crm
                 
   melanogaster  CTGGATCTTGGTGACTCCA-GTCGA------TGCGGCCAGATGCAAG--AGAGGTGATTAATTGCCACCC----GAATGTC--CCGGCCAACTGGTCG--GA------------------
       simulans  CTGGATCTTGGTGACTCCC-GTCGA------TGCGGCCAGATGCAAG--CGAGGTGATTAATTGCCACCC----GAATGTC--CCGGCCAACTGGTCG--GA------------------
      sechellia  CTGGATCTTGGTGACTCCC-GTCGA------TGCGGCCAGATGCAAG--AGAGGTGATTAATTGCCACCC----GAATGTC--CCGGCCAACTGGTCG--GA------------------
         yakuba  CGGGATC-TGGCGACTCCA-GTCGA------TGCGGCCAGATGCAAG--AGAGGTGATTAATTGCCACCC----GAATGTC--CCGGCCAACTGGTCG--CA------------------
         erecta  CTGGCTC-TGGTGACTCGA-GTACA------TGCCGCCAGATGCAGG--AGAGGTGATTAATTGCCACCC----GAATGTC--CCGGCCAACTGGTCG--GA------------------
      ananassae  ---------------------TCCG------TGCGGTCAGATGCAAG--AGTTGTGATTAATTGCCAACA----GAATGTC--CCAGGGAACTGGTTGCCCA------------------
  pseudoobscura  CTGCTGCCTGTTG----CT-GTCCC------TGCGGTCAGATGCAAG--AGATTTGATTAATTATCGCGCCAGAGAATGTC--CCAGGGAATGGGCTG--CA------------------
     persimilis  CTGCTGCCTGTTG----CT-GTCCC------TGCGGTCAGATGCAAG--AGATTTGATTAATTATCGCGCCAGAGAATGTC--CCAGGGAATGGGCTG--CA------------------
        virilis  --------------------GTCCA------TACGG--AGCCGCGGG--AGC--TGATTAATTGCAACT-----GAAAGTCG-TGGGGGAACTGGTTG--ACGTCC--------------
     mojavensis  CTTTACCTGGCTGACTACCTGGCTGGCGGGCTGCCG--GCCTGCAGGGCAGC--TGATTAATTGCAATT-----GTAAGTC--TTGGGGAACTGGTTG--TTGTTCTTGTTGTTGTTGTT
      grimshawi  ------------------------------------------------------TGATTAATTGCAACT-----CAAAGGCGAATGGGGAACTGGTTG--GCGG----------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------TTTTACCT----TTTT----T-ACGTTTACCTGTCGCCGG---TTAATGTTGCCAACTTAATCGCATTTTG----CCAA-GAC----TCTTGATAATGTTGTTTAT--------
       simulans  ------TCTTACC-----TTTT----T-ACGTTTACCTGTCGCCGG---TTAATGTTGCCAACTTAATCGCATTTTG----CCAA-GAC----TCTTGATAATGTTGTTTAT--------
      sechellia  ------TCTTACCT----TTTT----T-ACGTTTACCTGTCGCCGG---TTAATGTTGCCAACTTAATCGCATTTTG----CCAA-GAC----TCTTGATAATGTTGTTTAT--------
         yakuba  ------TCTTGCCT----GTTC----T-GCGTTTACCTGTCGCCGG---TTAATGTTGCCAACTTAATCGCATTTTG----CCAA-GAC----TCTTGATAATGTTGTTTAT--------
         erecta  ------TTTTACCT----TTTC------GCGTTTACCTGTCGCCGG---TTAATGTTGCCAACTTAATCGCATTTTG----CC-A-GAC----TCTTGATAATGTTGTTTAT--------
      ananassae  ------GTTCGACTCCGATTTC----T-ACCTTTACCTGTCGCCGG---TTAATGTTGCCAACTTAATCGCGTTTTG----CCAA-GAC----TCTTGATAATGTTGTTTAT--------
  pseudoobscura  ------ACT--CCT----TTTCCAGCT-ACAGCTACCTGCTGCTGGGATCGTATGTTGCCGACTTAATCGCCTTTCAGCCCCCGA-GACTCTTTCTTGATAATGTTGTTTATGATATTTC
     persimilis  ------ACT--CCT----TTTCCAGCT-ACAGCTACCTGCTGCTGGGATCGTATGTTGCCGACTTAATCGCCTTTCAGCCCCCGA-GACTCTTTCTTGATAATGTTGTTTATGATATTTC
        virilis  ------GTTTGGC-----TCTT----G-G--TTAG-CTGTCGCCAG---TTAATGTTGCCAACTTAATCGCATTTGG----ACGG-GTC----GCTTGATAATGTTGTTTACGAGTCT--
     mojavensis  GTTGTTGTTCGTCT----TCTT----G-GGTTTTG-CTGTCGCCAG---TTAATGTTGCCAACTTAATCGCATTTGG----ACGG-GCC----CCTTGATAATGTTGTTTACGAGTAT--
      grimshawi  ------AGCTGTCT----TCTT----GTGGAGAAG-CTGTCGCCAG---TTAATGTTGCCAACTTAATCGCATTTGG----ACGGTGTC----TCTTGATAATGTTGTTTACGACTCG--
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --GTGCAAAACGATTTG-----------GCTGACCGG-------------------GCGAT--GGGCA----------A-----TG----GGCGATGC------GG--------------
       simulans  --GTGCAAAACGATTTG-----------GCTGACCGG-------------------GCGAT--GGGCA----------A-----TG----GGCGACGC------GG--------------
      sechellia  --GTGCAAAACGATTTG-----------GCTGACCGG-------------------GCGAT--GGGCA----------A-----TG----GGCGATGC------GG--------------
         yakuba  --GTGCAAAACGATTTG-----------GCTGACCGG-------------------GCGAT--GGGCA----------A-----TG----GGTGATGC------GG--------------
         erecta  --GTGCAAAACGATTTG-----------GCTGACCGG-------------------GCGAT--GGGCG----------A-----TG----GAAGATGC------GG--------------
      ananassae  --GTGCAAAACGATTTG-----------G-----CGG-------------------ACACT--GGGAG----------A-----------GCTGATGC------AG--------------
  pseudoobscura  AAGTGCAAAACGATTTA-----------GTTGCCCGGAAAAAAAGGGCCACGACACACGGC--TGACA----------AAGAGCTT----GATGCAGC------AG--------------
     persimilis  AAGTGCAAAACGATTTA-----------GTTGCCCGGAAAAAAAGGGCCACGACACACGGC--TGACA----------AAGAGCTT----GATGCAGC------AG--------------
        virilis  --GTGCAAAACGATTTGGCTGCAAC-TCAGAGCCCGG-------------------CAACT--GGACGCGCT------G-----GG----GTAGAGAC------AGAAGTCCAGACCCCA
     mojavensis  --GTGCAAAACGATTTG----------------CCGG-------------------ACACTGGGGAGACGCC------G-----GGTCCAGCAGAGAC------AG---------CCTCA
      grimshawi  --GTGCAAAACGATTCC----CAACATTGCCAACTGG-------------------ACATT--GGACACTCCTTGGAGG-----GG----GGAGAGACTGGGAGAG---------CGACA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------------ATCTGC--------------------------GGATAATTAATGAGACAGAC-TTGTGTAATTAATAAAAAACTTTTAATTACTGAGGGCA-----------GCA
       simulans  ---------------ATCTGC--------------------------GGATAATTAATGAGACGGAC-TTGTGTAATTAATAAAAAACTTTTAATTACTAAGGG-------------GAA
      sechellia  ---------------ATCTGC--------------------------GGATAATTAATGAGACGGAC-TTGTGTAATTAATAAAAAACTTTTAATTACTAAGGG-------------GAA
         yakuba  ---------------ATCTGCG---------AATCTGGGGATCT-GCGGATAATTAATGAGACAGAT-TTGTGTAATTAATAAAAAACTTTTAATTACTGAGG--------------GCA
         erecta  ---------------ATCTGCG---------GATCTGGGGATCT-GGGGATAATTAATGAGACAGAC-TTGTGTAATTAATAAAAAACTTTTAATTACTGAGG--------------GCA
      ananassae  ---------------ATCGTC-------------------TTCT-TTGGATAATTAATGAGACAGAC-TTGTGTAATTAATAAAAAACTTTTAATTACCATGG--------------GCA
  pseudoobscura  ---------------ATCCTC--------------------------CGATAATTAATGAGAATG---------------AAAAAAACTTTTAATTACTTCAGGCAGGAGGCAGGAGGCA
     persimilis  ---------------ATCCTC--------------------------CGATAATTAATGAGAATG--------------AAAAAAAACTTTTAATTACTTCGGGCAGGAGGCAGCAGGCA
        virilis  GACTCCA--------GACTCG----------------CGGCTCT-GACTGTAATTAATGAGGCTCAG-TTGTGTTATTATTAAAAA-CTTTTAATTACAGCGC--------------GCC
     mojavensis  GCTTTCGATTGGGGCGACTCTT-------ACTCTCGCCGACTCTGGACAATAATTAATGATGC--------TGTTATTATTAAAAA-CTTTTAATTACTTGGC-----------------
      grimshawi  TGTT-----------GACTCGCAGGGCAGACTGACTGCGACTCT-GACGATAATTAATGAGGCTGGGTTTGTGTTATTATTAAAAA-CTTTTAATTACAGCGT--------------GCT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  G-------G-CCTGTCCTTGAGCCACTGCTGCT-----------------------GCTGCTGCTGAAATC--------CTAATGAGTGGCGAAGGAA---GAAAAAAAAATGTTACATG
       simulans  G-------G-CCTGTCCTTGA------GCTGAT-----------------------GCTGCTGCTGAAATC--------CTAATGAGTGGCGAAGGAA---G-AAAAAAAATGTTACATG
      sechellia  G-------G-CCTGTCCTTGA------GCTGAT-----------------------GCTGCTGCTGAAATC--------CTAATGAGTGGCGAAGGAA---G--AAAAAAATGTTACATG
         yakuba  G-------G-TCTGTCCTTGA-----------------------------------GCTGCTGCTGAAATC--------CTAATGAGTGGCGAAGGCA---G-AAAAAAAATGTTACAAG
         erecta  G-------G-TCTGTCCTTGA-----------------------------------GCTGCTGCTGAAATC--------CTAATGAGTGGCGAGGGCA---G---AAAAAATGTTACAAG
      ananassae  G-------GTCCTGTCCTTGA-----------------------------------GC--CTGCTGGCATC--------CTAATGAGTCGCGAA---------AAAATAAATATTACAGA
  pseudoobscura  GCAGGCTAC-AGTGTCCTTGA------GAGCCT-----------------------GCT-CTGCTG--ATC--------CTAATGATCCGCTCAAACC---A-AAAAAAAAGAAAGAAAG
     persimilis  G-------C-AGTGTCCTTGA------GAGCCT-----------------------GCT-CGGCTG--ATC--------CTAATGATCCGCTCAAACCAAAA-AAAAAAAAGAGAGAAAG
        virilis  --------G-TGTGTCCTTGG------GCCGAG-----------CAATAAGGTGA---GGCTGCAAAAATCCATGTGCTCTAATGAGCCC----AAAT---A-AAGCCAAACAA------
     mojavensis  -----------ATGTCCTTGA------GTTCTT-----------CTTTTG-----------CACAAAAATCCGTCTGCTCTAATGAGCCC--AAAAAT---A-AAACCAAAGAAAACAAA
      grimshawi  G-------G-CGTGTCCTTGA------GCCTTGACAAGCCCGGACAAAAAGGTAATGCGACTGCAAAAATCCATGTCGTCTAATGAACCC----AAAT---A-AAACCAAACAA------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --TCCTGGATGATCC----ATAGATGGGC-GGG--AAAAAG----TCCGATATGCGACG-----------AGATTTTTGCGTAATTTCTCAAGGC-------------------------
       simulans  --TCCTGGATGATCC----ATAGATGGGC-GGG--AAAAAG----TCCGATATGCGACG-----------AGATTTTTGCGTAATTTCTCAAGGC-------------------------
      sechellia  --TCCTGGATGATCC----ATAGATGGGC-GGG--AAAAAG----TCCGATATGCGACG-----------AGATTTTTGCGTAATTTCTCAAGGC-------------------------
         yakuba  TCTCCTGGATGATCC----ATAGATAGGC-GGG--AAAAAA----TCCGATGTGCCACG-----------AGATTTTTGCGTAATTTCTCAAGGC-------------------------
         erecta  --TCCTGGATGATCC----ATAGATAGGCGGGG--AAAAAA----TCCAATGTCTCGCG-----------AGATTTTTGCGTAATTTCTCAAGGC-------------------------
      ananassae  --AC--GCATGGC---------GATGTGA-TGG--AAAAAA----TCCATGGTCCTGCT-----------AGATTTTTGCGTAATTTCTCAAGGC-------------------------
  pseudoobscura  --ACCTAGATAC----------GAAAATC-GGG--AAAAAAGATCGCCCGTAAATCTAT-----------AGATTTTTGCGTAAATTCTCAAGGA-------------------------
     persimilis  --ACCTAGATAC----------GAAAATC-GGG--AAAAAAGATCGCCCGTAAATCTAT-----------AGATTTTTGCGTAAATTCTCAAGGA-------------------------
        virilis  ---------------------AAAAAGTC-AGC--TAAAACTATTTCAGAACATATACG----GCCAGG-CGATTTTTGCGTAAACTCTCAAGGT-------------------------
     mojavensis  --ACC-AAAAAAGAAGAAAAGAAAAAGTG-AGTCGCAAAACTATTTCAAAATTTTTGCGCACAGTCAGGCCGATTTTTGCGTAAGGTCTCAAGGCCTCAGACACACTCACACAGAGTCAG
      grimshawi  -------------ACAAACAAAAAAAGTC-AGC--CAAAACTATTTCAGA--------------------CGATTTTTGCGTAAACTCTCAAGGT-------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -----------------CAGA-C-------AGGG--ACA-ACA-TAAAAAGGA----------CGAATTTCTTACGTAAGTGACCG-------AAAT-ATGT-----------TTTTATG
       simulans  -----------------CAGA-C-------AGGG--ACA-ACA-TAAAAAGGA----------CGAATTTCTTACGTAAGTGACCG-------AAAT-ATGT-----------TTTTATG
      sechellia  -----------------CAGA-C-------AGGG--ACA-ACA-TAAAAAGGA----------CGAATTTCTTACGTAAGTGACCG-------AAAT-ATGT-----------TTTTATG
         yakuba  -----------------CAGA-C-------AGGAGGACA-ACA-TAAAAAGGA----------CGAATTTCTTACGTAAGTGACCG-------AAAT-ATGT-----------TTTTATG
         erecta  -----------------CAGA-C-------AGGC--ACA-ACA-TAAAAAGGA----------CGAATTTCTTACGTAAGTGCCCG------AAAAT-GTGT-----------TTTTATG
      ananassae  -----------------CGAATC-------ATGA--AGATACA-TAAAAAGGA----------CGAATTTCTTACGTAAGTGTCCG------AAAAT-ATGT-----------TTTTATG
  pseudoobscura  -----------------TAAG-CGACGCGGAGGC--GAG-ACA-TAAAAAGGA-ACAAGGATAGATATTTCTTACGTAAGTGCCTGGCAGCAAAAAT-ATGT-----------TTTTATG
     persimilis  -----------------TAAG-CGACGCGGAGGC--GAG-ACA-TAAAAAGGA-ACAAG----GATATTTCTTACGTAAGTGCCTGGCAGCAAAAAT-ATGT-----------TTTTATG
        virilis  ----------------------A-------ATCT--ACA--CA-TAAAAAGGACACG------CAAAATTCTTACGTAAGTGGGCA-------GAAA-ATAT----------CTTTTATG
     mojavensis  AGTCGCACGCACACACACACA-C-------ACTT--ACA--CACTAAAAAGGACACGCA----CAAAATTCTTACGTAAGTGGGCA-------GAAATATAT----------GTTTTATG
      grimshawi  ----------------------G-------ATGC---CA--CA-TAAAAAGGACACGCA----CAAAATTCTTACGTAAGTCGGCA-------ATAT-GTATAAGATTTCTATTTTTATG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMM

                 
   melanogaster  AGAGG--ATCATAAAT---TTTTTTTCCCC--T---------------------AAGAATGGGAACGCGTTCTCGTTCTCTGATCTCAATGTTCTGATCTCGTTCCATTTTTAGCGGAAC
       simulans  AGCGG--ATCATAAA----TTTTTTTCCCC--T---------------------AAGAATGGGAACGCGTTCTCGTTCTCTGATCTCAATGTTCTGATCTCGTTCCATTTTTAGCGGAAC
      sechellia  AGAGG--ATCATAAA----TTTTTTTCCCC--T---------------------AAGAATGGGAACGCGTTCTCGTTCTCTGATCTCAATGTTCTGATCTCGTTCCATTTTTAGCGGAAC
         yakuba  AGAGG--ATCATAAA----TTTTTTTCCCT--T---------------------AAGAATGGGAACGCGTTCCCGTTTTCTGATCTCAATGTTCTGATCTCGTTCCATTTTTAGCGGAAC
         erecta  AGAGG--ATCATAAA----TTTTTTTCCC---T---------------------AAGAATGGGAACGCGTTCCCGTTTTCTGATCTCAATGTTCTGATCTCGTTCCATTTTTAGCGGAAC
      ananassae  AGAGG--ATCATAAA----TTTTTTTCCCC--T---------------------AAGAATGGGAACGCGCTCTCG-------------ATGTTCTGATCTCGTTCCATTTTTAGCGAAAC
  pseudoobscura  AGAGG--ATCATAAACATATTTTTTCCCCCGTC---------------------AAGAATGGGAACGCGCTCTCA-------------ATGTTCTGATCTCGTTCCATTTTTAGCGGAAC
     persimilis  AGAGG--ATCATAAACATATTTTTTCCCCCGTC---------------------AAGAATGGGAACGCGCTCTCA-------------ATGTTCTGATCTCGTTCCATTTTTAGCGGAAC
        virilis  AGCGGGCATCATAAA----TATATTTTTTC--TCGCTCGACCCGAACGACAGACAAGAATGAAAACGCGCTCTCA-------------ATGTTCTGATCTCGTTCCA---------GAAT
     mojavensis  AGCGGCAGTCATAAA----ATTGTGACTTG--TTTTTTG---------------AAGAATGAGAACACGCTCTCA-------------ATGTTCTGATCTCGTTCCA---------GAAT
      grimshawi  AGCGG-CATCATAAA----TTTATTTTTTG--------GACAC-----------AAGAATGAAAACGCGCTCTCA-------------ATGTTCTGATCTCGTTCCA---------GAGC
        Summary  BBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBB

                 
   melanogaster  T--G------TCCGCCA----------------GTCCGA-TGTCCT-TTTTCGACCGCCTCACGGCATGACATAATTTCGCATAATTTGCA-ACA---------ATC-------CTCGAA
       simulans  T--G------TCCGCCA----------------GTCCGA-AGTCCT-TTTTCGACCGCCTCACGGCATGACATAATTTCGCATAATTTGCA-ACA---------ATC-------CTCGAA
      sechellia  T--G------TCCGCCA----------------GTCCGA-TGTCCT-TTTTCGACCGCCTCACGGCATGACATAATTTCGCATAATTTGCA-ACA---------ATC-------CTCGAA
         yakuba  T--G------TCCGCCA-------------TCCGTCCGA-TGTCCTTTTCTTGACCGCCTCACGGCATGACATAATTTCGCATAATTTGCA-ACA---------ATC-------CTCGAA
         erecta  T--G------TCC----------------------------------TTTTCGACCGCCTCACGGCATGACATAATTTCGCATAATTTTCA-ACA---------ATC-------CTCGAA
      ananassae  TCCG------TCCGTCC-------------GACGTCCGT-TGTCCT-TTT---------TCACGGCATGACATAATTTCGCATAATTTGCA-ACA---------ATCAACTATTTTGAAA
  pseudoobscura  G--GAACGGAACCGCCT----------------GTCCGTCCGTCCG-TCT--GTCCGCCTCACGGCATGACATAATTTCGCATAATTTGCACACAGGATTCAGCACC-------CTCGAA
     persimilis  G--GAACGGAACCGCCTGTCCGTCCGTCTGTCCGTCCGTCCGTCCG-TCT--GTCCGCCTCACGGCATGACATAATTTCGCATAATTTGCACACAGGATTCAGCACC-------CTCGAA
        virilis  C--G-------------------------------------------CCT----------CGCGGCATGACATAATTTTGCCTAATTTACC-AGC---------GTA-------TTCCAA
     mojavensis  C--G-------------------------------------------TCG----------CGCGGCGTGACATAATTTTGCCTAATTTACC-AAA---------ACA-------TTCCAA
      grimshawi  C--G-------------------------------------------TCT----------CGCGGCATGACATAATTTTGCCTAATTTAAC-AGC---------G---------TTCCAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGACTTTTCGCCCCGA------------------ACAC----------CAGGACACCCACCAGCACGTGACA--AAAAAGAT----------------------GAAC------------
       simulans  GGACCTTTCGCCCCGA------------------ACAC----------CAGGACACCCACCAGCACGTGACA--AAAAAGAT----------------------GAAC------------
      sechellia  GGACCTTTCGCCCCGA------------------ACAC----------CAGGACACCCACCAGCACGTGACA--AAAAAGAT----------------------GAAC------------
         yakuba  GGACTTTTCGCCCATA------------------GCACCCAGGACACGCAGAACAC---CCAGCACGTGACA--AAAAAGAT----------------------GAAC------------
         erecta  GGACTTTTCGCCCATA------------------GCAC----------CAGGACAC---CCAGCACGTGACA--AAAAAGAT----------------------GAAC------------
      ananassae  GGACCCTCGGCCCAGG------------------ACGA----------CA----------CTGCACGTGACA--AAAAAGGA----------------------GGAC------------
  pseudoobscura  GGACTCT-----------------------------------------------------CAGCACGTGACA--AAAAAG------------------------GAGC------------
     persimilis  GGACTCT-----------------------------------------------------CAGCACGTGACA--AAAAAG------------------------GAGC------------
        virilis  GGACCCA--GCCAGGACAACGGCA--CACAGGC-ACAG----------CG--------CGCAGCACGTGACA--AACAAAAAATAGAAGAAATGCAACAAACACAAACAAATAAAC----
     mojavensis  GGACCTC--GCCAGGAT-------------------------------CA--------CGCAGCACGTGACAGCGACAAGAAGAAGAAGAAGCACTGAACAATCGAACAAAAAAATTGCA
      grimshawi  GGACCAT--GCCACAACTGCAACAACAACAGGCAACAG----------CGGCAACGGTCGCAGCACGTGACA--AACAAAAAA-ATAGTCAAAATTGCACAGA-AAACAAAACA------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------------AAAC-A--AAAAAGAGA-----------GCGACCTGC--T-CGCAGATTTTTAGTGCGAATTCCGCAGGTCAT-CGCC----------G-A-AATTT---GGCCAACA
       simulans  ------------AAACAA--AAAAAGAGA-----------GCGACCTGC--T-CGCAGATTTTTAGTGCGAATTCCGCAGGTCAT-CGCC----------G-A-AATTT---GGCCAACA
      sechellia  ------------AAACAA--AAAAAGAGA-----------GCGACCTGC--T-CGCGAATTTTTAGTGCGAATTCCGCAGGTCAT-CGCC----------G-A-AATTT---GGCCAACA
         yakuba  ------------AAAC-A--AAAAAGAGG-----------GCGACCTGC--T-CGCAGATTTTTAGCGCGAATTCCGCAGGTCAT-TGCC----------GAA-AATTT---GGCCAACA
         erecta  ------------AAAC-A--AAAAAGAGG-----------GCGACCTGC--A-CGCAGATTTTTAGTGCGAATTGCGCAGGTCAT-TGCC----------G-A-ATTTT---GGCCAACA
      ananassae  ------------AAAC-A--AAAAAGAGA-----------GCGACCTGA--C-AGCGAATTTTTAGTGCGAATTCTGCAGGTCAC-CGCCAGGATGGTCGG-T-ATTTT---GGCTA--A
  pseudoobscura  ------------AAAA-C--AAAAAGAGA-----------ACGACCTGCCGT-AGCAGATTTTTAGTGCGAATTTCGCAGGTCATGAGCC----------C-A-GATATTTCGGCCAAAA
     persimilis  ------------AAAA-C--AAAAAGAGA-----------ACGACCTGCCGT-GGCAGATTTTTAGTGCGAATTTCGCAGGTCATGAGCC----------C-A-GATTTTTCGGCCAAAA
        virilis  ------------AAAC-A--AAAAAAAATTTAATCCTCTTTCGACCTGC--G-TGCAGATTTTTAGCTTGAATTTCGCAGGT----CGCC----------G-G-CCGTT---TGCC-AAT
     mojavensis  GAAAATTCGCAAAAAC-AATAGAAAAAAATAAATATTCTGCTGACCTGC--GCTGAATATTTTTAGCTCGAATTTCGCAAGG----TCCT----------G-C-GCCTT---GGCCTGGC
      grimshawi  ------------AAAC-AAAAAAAAAAGATCAGT------TCGACCTGC--G-TGCAAATTTTTAGCTTGAATTTCGCAGGT----CGCC----------G-CTGTTTT---TGCAAAAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ACTTAT----GAATCTGCATAT----TTTGGCAATATGC-------------GCAGTCGTCCT----GCTGCTCGACATGTTCCC-ATTTTTTGTTCTAATTATTTTTTATGAGTTCAGT
       simulans  ACTTAT----GAATCTGCATAT----TTTGGCAATATGC-------------GCACTCGTCCT----GCTGCTCGACATGTTCCC-ATTTTTTGTTCTAATTATTTTTTATGAGTTCAGT
      sechellia  ACTTAT----GAATCAGCATAT----TTTGGCAACATGC-------------GCACTCGTCCT----GCTGCTCGACATGTTCCC-ATTTTTTGTTCTAATTATTTTTTATGAGTTCAGT
         yakuba  ACTTAT----GAATCTGCATATTTGCATTGGTAATATGCG-----------CGAAGTCGTCCT----GCTGCTCGACATGTTCCC-ATTTTTTGTTCTAATTATTTTTTATGGGTTCAGA
         erecta  ACTTAT----GAATCTGCATAT----ATTGGTAATATGCG------------GGCGTCGTCCT----GCTGCTCGACATGTTCCC-ATTTTTTGTTCTAATTATTTTTTATGGGTTCAGT
      ananassae  ATTCGTGGCAGGATCTGCATATAATTTTTGCCAGGATGC--------------AAATCG-CCT----GCCAGGCGACGTGTTCCC-ATTTTTTGTTCTAATTATTTTTTATGAGTTCAGT
  pseudoobscura  GCGAATTG--AATTTTTCGTCTCAA-TCTGGCCATATCCCATATCCCGCCCCGCTCCCGTCCT----GCGA------GTGTTACC-ATTTTTTGTTCTAATTATTTTTTATG------GT
     persimilis  GCGAATTG--AATTTTTCGTCTCAA-TCTGCCCATATCCCATATCCCGCCCCGCTCCCGTCCT----GCGA------GTGTTACC-ATTTTTTGTTCTAATTATTTTTTATG------GT
        virilis  TTCCAC----AGATCT-----C----TTTAG---CATTT--------------TTGCCCAAAT----ATTCCCCTAAGTGTTCGC-ATTTTTTGGTCTAATTATTTTTTATGAGTGCAGT
     mojavensis  CACAAC----AGCGTT-----T----ATTGGCAACATTT--------------TTGCCAGCTTCGTGATTTCCC--AGTTTCTGCTTTTTTTTGGTCTAATTATTTTTTATGAGTGCAAT
      grimshawi  GCTCAC----AGA--------T----ATTCGCCAAA------------------TGCCAAATT-----TTCCCCTAAGTGTTCGC-ATTTTTTGGTCTAATTATTTTTTATGAGTGCAGT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBMMMMMMMMBBBBBBBBB

                 
   melanogaster  GCACGCGCAAAAATTGTCG--CACTTCTTTGTGGCCACCCGCAAGACGTGTTTTTCTA-----------------------TAGATTTTCGC----ATTG-TTTTGGG------------
       simulans  ACACGCGCAAAAATTGTCG--CACTTCTTTGTGGCCAGCCGC-AGACGTGTTTTTCTA-----------------------TGGATTTTCGC----ATTG-TTTTGGG------------
      sechellia  ACACGCGCAAAAATTGTCG--CACTTCTTTGTGGCCAGCCGC-AGACGTGTTTTTCTA-----------------------TGGATTTTCGC----ATTG-TTTTGCG------------
         yakuba  GCACGCGCAAAAATTGTCG--CACTTCTTTGTGGCCAGCCGC-AGTCGTGTTTTTCTA-----------------------TGGATTTCTGC----ATTGTTTTTGGG------------
         erecta  GCACGCGCAAAAATTGTCG--CACTTCTTTGTGGCCAGCCGC-AGTCGTGTTTTTCTA-----------------------TAGATTTTCGC----ATTG-TCTTGGG------------
      ananassae  CCACGCGCAAAAATTGTCG--CACTTCTTTGTGGCCAGCCAC-AG----GTTCTT----------------------------------------------TCTGCCG------------
  pseudoobscura  GC-----CAAAAATTGTCG--CACTTCTTTGCGGCTGGCCGC-AGTC--GCTCTCCGA---------------GCACACGCTGCTGCTCGAC----ATCT-TTTTG--------------
     persimilis  GC-----CAAAAATTGTCG--CACTTCTTTGCGGCTGGCCGC-AGTC--GCTCTCCGA---------------GCACACGCTGCTGCTCGAC----ATCT-TTTTG--------------
        virilis  CCACGTGCAAAAATTGTCG--CACTTCGCTGCGGCCAGCCGC-ATAT--CCAGTTCTT------------------TCCATTGACCGTCGAC----CCGA-ATCTGAG------------
     mojavensis  CCACGTGCAAAAATTGTCGCACACTTCGCTGCGGCCAGCCGC-AGCT--CTCGCTCCTCTCCCTCTCTCCCATACATCAGTTGCTCATTGACTGATCTAA-ATATGCGTAAACAAGGATA
      grimshawi  CCACGTGC-AAAATTGTCG--CACTTCTCTGCGGCCAGCCGC-ATTT--TCAGTTCAA------ATTCTCAATGCATCTATTCAGAGTCGAC----CTGA-ATCTGAG------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------------GTTTTTGTTTCTATTC-ATGATTTTTTA-----------------------TTTGCCCCGAGCC-CTGCTGTTCT-TTTTG---GCCCTG-T------TT-----TCT
       simulans  ------------GTTTTTGTTTCTATTC-ATGATTTTTT------------------------TTTGCCCCGAGCC-CTGCTGTTCG-TTTTG---GCCCTG-T------TT-----TCT
      sechellia  ------------GTTTTTGTTTCTATTC-ATGATTTTTTA-----------------------TTTGCCCCGAGCC-CTGCTGTTCGTTTTTG---GCCCTG-T------TT-----TCT
         yakuba  ------------GTTTTTGTTTCTATTC-ATGATTTTTTA-----------------------TTTGCCCCGAGCC-CTGCTGTTCT-TTTTG---GCCCTGTT------TT-----CTT
         erecta  ------------GCTTTTGTTTCTATTC-ATGATTTTTTA-----------------------TTTGCCCCGTGCC-CTGCTGTTCG-TTTGG---GCCCTG-T------TT-----CTT
      ananassae  ------------GTTTTTG-TTCTATTC-ATGATTTTTTA-----------------------TTTGACAGTAGGC-CTGCTGTTC--TTTTG---GCCAGG-T------TTTCTTCTCT
  pseudoobscura  --------------TTTATTTTCTATTCTATAATTTTT-----------------------------------AGC-TAGCTGTTCCGTTCGG---GGCGTT-TCTTTCTTT-----TTT
     persimilis  --------------TTTATTTTCTATTCTATAATTTTT-----------------------------------GGC-TAGCTGTTCCGTTCGG---GCCGTT-TC-----TT-----TTT
        virilis  -------CCAAATCTTTTTGTTCTCCCG-TTGATTTTTTATATTGTTCGATGCTTTATTTTTTTTTTTCCTCTGCCTCTGCTGTTCTTTTTTT---GTGGTT-T------TCGCAACTTG
     mojavensis  TATAGGTCTAGATCTTTTTGTTCTGCTC-TTAATTTTTTA------------CTTTGTTTTGGCTTTGGCTTTGGC-CTGCTGTTCTTTTTTTCCCTCGGTT-T------TTGTCACAGA
      grimshawi  -------CCATATCTTTTTGTTCGCCTG-TTGATTTTTTA------------CTTTGTTCGCTTTTTTTC-CAGAC-CTGCTGTTCTTTTTTC---GTGGTT-T------TCGCCAGTTG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TT---------TTTGTGGTTAGAA---------GTG------GACCCAATTTTTAGCTAATAATTGTTGCAATTTTTGTGGTTTTGGGCCTGTTCA--------GAGACCTGT--TCTGA
       simulans  TT---------TTTGTGGTTAGAA---------GTG------GACCCAA-TTTTAGCTAATAATTGTTGCAATTTTTGTGGTTTTGGG------CA--------GAGACCTGT--TCTGA
      sechellia  TT---------TTTGTGGTTAGAA---------GCG------GACCCAATTTTTAGCTAATAATTGTTGCAATTTTTGTGGTTTTGGG------CA--------GAGACCTGT--TCTGA
         yakuba  TT---------TTTGTGGTTAGCA---------GAG------GACCCAATTTTTAGCTAATAATTGTTGCAATTTTTGTGGTTTCGAA------CA--------GAGAGCTGT--TCTGA
         erecta  TT---------TTTGTGGTTAGCA---------GAG------GGCCCAATTTTTAGCTAATAATTGTTGCAATTTTTGTGGTTCTACA------CA--------GAGACCTGT--TCTGA
      ananassae  TT---------TTTGTGGTCAGAC--T------GTA------GACCCAATTTTTTGCTAATAAGTGTTGCAGTTTTTGTGGTTTTCTC------TG--------CGGGTTTGC--TCTGG
  pseudoobscura  TG---------TTTGTGGTTTTACACT------GTG-TTTTTGGCCTAATTTTTAGCTGATAATTTTCGCAATTTTTGTGGGTTTTGC--GGTTTC--------GAGACTT---------
     persimilis  TG---------TTTGTGGTTTTACACT------GTG-TTTTTGGCCTAATTTTTAGCTGATAATTTTCGCAATTTTTGTGGGTTTTGC--GGTTTT--------GAGACTT---------
        virilis  TT---TGCCAATTCATTGTTTACA---------ACG-CAGTCGACCCAATTTTTAGCTAATTATTGTTCTAGTTATTGTGGTTT------------------------------------
     mojavensis  TT---------TTCATTGTTTACG--T------GCGACATGCGACCTAATTTTTAGCTAATAATTGTTCTACTTATTGTGGT--CAGCTTGGCGCA--------GGGCTCTGT--CCGAG
      grimshawi  TTGTTTGGCTATTCATTGTTTACA--CAACAAAACGGCA-ACGACCCAATTTTTGGCTAATAATTAGTCTAGTTATTGTGGT--TTACTTGGCGCACGTTTTTTGTGTCCTGTGGCCTGT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATTTAGGGCCGAAACC----AGTCAATCTGGA-----------CTAGGTAG-------CAGCTGTTAA--AATTAGAAGTGATAA-------------------------------TGAG
       simulans  ATTTAGGGCCGA--------AGCCAATCTGTA------------TAGGTAG-------CAGCTGGTAA--AATTAGAAGTGATAA-------------------------------TGAG
      sechellia  ATCTGAGACC----------AGTCAATCTGTA------------TAGGTAG-------CAGCTGGTAA--AATTAGAAGTGATAA-------------------------------TGAG
         yakuba  AATCTG-----------------------GAC------------TAGGTAG-------CAGCTGGTAA--AATTTTAAGCTATAA-------------------------------TGAG
         erecta  ATTCAGGCCTGAAACC----AGTCATTCTGCC------------TAGGTAGAATTGGCAAACTGGTAA--AATTATAAGCTGTAA-------------------------------TGAG
      ananassae  TTTTTGGTTGGGTTTTTGGGATTTAGGTTAGT------------AAGGTAG-------CTGATGGT---------------TTGT-------------------------------CGAG
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ----TGCAC-----------ATTTTGCGGGTG------------CAAAACG-------CAGCTTTTAA--AAATAGTATTTACAA-------------------------------TGAT
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  AGTT---------------------------------------------------------------------TTAAATTATTAA-------------------------------AAAA
      grimshawi  AGTC---------------TAGGTAGAGTGTGCAAGATGTCGTCTAGAGAG-------AAGCAATTAATTAGTTTTAACTACTAATCCTTCAGTTCCTCGCATAAAAGGAAAATGGAAGA
        Summary  BBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGCTACGCA-----------------------------------------AATCGATAATCTTTT------------TTATTAAATCTTTTTTTTTTTTTGATTC---------------
       simulans  GGCTACGCA-----------------------------------------AATCGAAAATCTGTT------------TTATTAAATC------TTTTTTAAAGTC---------------
      sechellia  GGCTACGCA-----------------------------------------AATCGAAAATCTTTT------------TTATTGAATC------TTTTTTTAAGTC---------------
         yakuba  ACCTACGCA-----------------------------------------GATTAAAACTCTTTT------------TTACT-AACT------CTTTTTTGAGTC---------------
         erecta  GGC--------------------------------------------------------------------------TTATT--ACA------TTTTTTTGGGTC---------------
      ananassae  ACTTGCGT--------------------------------------------TTAAAACATTTTT------------CAATTAGATA--------------AAAT---------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  GTTAACATA-----------------------------------------AATAAATGGTTTTTTATAATTAAGCAATTTTTAAGCA------TTTTTTGGGCACAATATTCAGTATCAA
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  AAATATATATACCGTT-------------------------------ATCAATATACAATTTTTT------------TTTTTTAAT-------TTATATTCTCAC---------------
      grimshawi  ATGTACACATACTTTTTGAGATATCTTTAAAGCCACTGTCTGAAAAGCTCAGTCTATTGTTTATT------------TTATGTAAT----------TATTCTCTC---------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRMMMMMMMMBBBBBBBBBMMMMMMMMBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -T----ATCAAGATTAAAAGA--TTTTCAGCTGTTTTT-----AGTATTTTTCTTCCGAAAGAGTGTCACTCCTTCTACTTTAACT---CT-CGCTCTC-----------AG------TT
       simulans  -C----ATCAAGTTTAAAAGA--TTTTCAGCTGTTTTT-----AGTATTTTTCTTCCGAAAGAGTGTCACTCCTTCTACTTTAACT---CT-CGCTCTC-----------AG------TT
      sechellia  -T----ATCAAGTTTAAAAGA--TTTTCAGCTGTTTTT-----AGTATTTTTCTTACGAAAGAGTGTCACTGCTTCTAATTTAACT---CT-CGCTTTC-----------AG------TT
         yakuba  -C----ATCAAGTTTTAAAGA--TTTTCAGTTGTTTTT-----AGCA-TATTCTGGCGAAAGAGTATCAC-------ACTTCAACT---TT-CACTCTCG----------CG------CT
         erecta  -C----ATCAAGTTTTAGAGA--TCTTCAGCAGTTCCT-----AACA-TCTTCTACCGAAAGAGTATCACTCCTTC-ACTTTAACT---TT-CGCTCT------------CA------GT
      ananassae  -T----ATTAAATTATTTACA--TTTTCAGTTGCTCC-----------TTT---------AAACTCTCACTCCTTTTACTTTCGCT---GGATACTCTC-----------CT------TT
  pseudoobscura  ----------------------------------------------------------------------TTCCCCTACTTTCCCTGGCTT-CACTCTCA---------CCG------CT
     persimilis  AC----ATTAATTTTTAGACAATTTTTGAGTCACATTT-----TTCA-TGATTTTGCAAGTGAATTTT--TTCGCCTACTTTCTCTGGCTT-CGCTCTCA---------CCG------CT
        virilis  -----------------------------------------------------------------------ACTGTAACTTTCACT---CT-CACTTCGC--------CGTT------TT
     mojavensis  -T-----TCAAAATC---TTA--ACTTAACTCATCTCT-----AGTTCAGTGCT----------GCTCAATTCTTCTACTCTTACT---CT-CATTTCACTCT--CCGCTCT------TT
      grimshawi  -TACATATCTATATT---ATA--TCTATAGTTGTCTTTTTAAGAATTACGTTCTCATTTCTAAATCTTAA-------ACTTTTACT---CT-CGTTTCGAGCTAGTCGCCTTTTGCCATT
        Summary  BBBBBBBBBBBBMMMMMMMMBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGCCTTTTA-CCTTTTCG-AC---TAATGATCAACT-TTAACGTTTGCTAATGACAACTGGCCAGA--ATCGGTCCACCTTTAGCCTTGACAAAT--------------CGCCGTGGCTT
       simulans  TGCCTTTTA-CCTTTTCG-AC---TAATGATCAACT-TTAACCTTTGCTAATGACAACTGGCCAGA--ATCGGTCCACCTTTAACCTTGACAGAT--------------CGCCGTGGCTT
      sechellia  TGCCTTTTA-CCTTTTCG-AC---TAATGATCAACT-TTAACCTTTGCTAATGACAACTGGCCAGA--ATCGGTCCACCTTTAACCTTGACAGAT--------------CGCCGTGGCTT
         yakuba  TGCCTTTTA-CCTTTTCG-CC---TAATGATCAACT-TTAACCTTTGGTAATGACAACTGGCCAGA--ATCGGTCTGCCTTCAACCTTGACAAAT--------------CGCCGTGGCTT
         erecta  TGCCTTTTA-CCTTTTCG-AC---TAATGATCAACT-TTAACCTTTGCTAATGACAACTGGCCAGA--ATCGGTCTACCTTTAGCCTTGACAAAT--------------CGCCGTGGCTT
      ananassae  TGCCTTTTA-CCCTTTCGCCC---TAATGATCAACT-TTAACCTTTGCTAATGACAACTGGCAAGC--ATCTGAC-------AACCTTGACAGAT--------------CGCCGTTTCTC
  pseudoobscura  TGCCTTTTA-CCTTTTCG-CCCCTTAATGAGCAACT-TTAACCTTTGCTAATGACAACTGGCCAGAGAACCAACCGATCGAACCCCTTGACGATT--------------GACC-------
     persimilis  TGCCTTTTA-CCTTTTCG-CCCCTTAATGAGCAACT-TTAACCTTTGCTAATGACAACTGGCCAGAG-ACCAACCGATCGAAACCCTTGACGATT--------------GACC-------
        virilis  TGTCTTTTAGGCCG--CG-CC---TAATGAGCAATT-TGAACCTTAGCTAATGACAACTCGC-------------------CAGCCTTGACAAAA------------GACAGCAGGCCGT
     mojavensis  TGCCTTTTA-GCCGAAAG-CC---TAATGAGCTGTTCTTAACCTTAGCTAATGACAATTCGTAA-----------------CAGCCTTGACAAAA-------------------------
      grimshawi  TGGCTTTTACCCTT--CG-GC---TAATGAGCAGTT-TTAACCTTAGCTAATGACAACTGACCAAC--G------------CATCCTTGACAAAAGACAAGCCAAAAGACAGCGGGACAG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGTGACAGATGAGGAGTTTT-AACTCAGCTTGAAACCG----------------AAACCTAA---AAACCTAAA----ACTCACCATCA----TGTCAACACTTTCCCTGCCAACCATAA
       simulans  GGTGACAGATGAGGAGTTTTCAACTCAGCTTGAAACCG----------------AAACCTAA---AAACCTAAA----ACTCACCATCA----TGTCAACACTTTCCCTGCCAACCATAA
      sechellia  GGTGACAGATGAGGAGTTTT-AACTCAGCTTGAAACCG----------------AAACCTAA---AAACCTAAA----ACTCACCATCA----TGTCAACACTTTCCCTGCCAACCATAA
         yakuba  GGTGACAGATGAGTAGTTTC-AACTCAGCTTGAAACCG----------------AAACCCAA---AAACCTAAA----ACACACCATAA----TGTCAACACTTTCCCTGCCAACCATAA
         erecta  GGTGACAGATGAGGGGTTTT-AACTCAGCTTGAAACCGAAACCTAAAGACCTAAAAACCTAA---AAACCTAAA----ACACACCATAA----TGTCGACACTTTCCCTGCTAACCATAA
      ananassae  GGTGACAGATGAGTAGTTAT-GTTTTGACCTTAAACCG----------------AAACCCGA---AACCAGCTT----GCCAACCATCAG---TGTCAACACTTTCCCTGTTACCCATAA
  pseudoobscura  -TTGACAAATG------CCC-------------AACCG----------------AAAAACCG---AAACGTAAC----CCGAGCGACCAGCCATGTCAACACTTTCGCTGAAACCCCT--
     persimilis  -TTGACAAATG------CCC-------------AACCG----------------AAA--------------AAC----CCGAGCGACCAGCCATGTCAACACTTTCGCTGAAACCCCT--
        virilis  GTCGAAAAATT---GTACTT-AACTCAGTAT--GGATG----------------AGGCCAATTCCGTGTCTAAC----CCATCCGACCAACAACGTCAACACTTTCGCTTCCA-------
     mojavensis  ---------------CCCTT-AACGCAATTG--AAGTG----------------AAGCCAATTTGGTGTCTAAC----CCGATCGACCAAAAATGTCAACACTTTCCCTGTCT-------
      grimshawi  GGTGAAATTT-----CACTT-AACTCAATTT--AACTG----------------AAGCCAATTCCGTGTCTAACCAAGCAAGCAAACCAGCAACGTCAACACTTTCGCTTGCATCC----
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATACTCGAAAAACCCA-TAAAATCACTGAAAT-------------TCAGAC--GAGAGCCGGGCGAAACCCTT-------TGCCACAATTAAAATGTTAAACTGGAGT--AAATATCATA
       simulans  ATACTCGAAAGACCCA-TAAAATCACTGAAAT-------------TCAGAC--GAGAGCAGGGCGAAACCCTT-------TGCCACAATTAAAATGTTAAACTGGAGT--AAATATCATA
      sechellia  ATACTCGAAAAACCCA-TAAAATCACTGAAAT-------------TCAGAC--GAGAGCAGGGCGAAACCCTT-------TGCCACAATTAAAATGTTAAACTGGAGT--AGATATCATA
         yakuba  ATACTCGAAAAACCCATTAAAATCACTGAAAT-------------TCAGACGAGAGAGCAGGGCGAAACCCTT-------TGCTACAATTAAAATGTTAAACTGGAGT--AAATATCATA
         erecta  ATACTCGAAAAACCCA-TAAAATCACCGAAAT-------------TCAGAC--GAGCGCTGGGCGAAACCCTT-------TGCTACAATTAAAATGTTAAACTGGAGT--AAATATCATA
      ananassae  ATATCCTGCCGCCC---TAAAGTGCCCAGAAC-------------TCGAGC------------TCGAATCCTT-------TGCTACAATTAAAATGTTAAACTGGAGT--AAATATCATA
  pseudoobscura  --------------------------------------------------------------------CCTTT-------TGCCACAATTAAAATGTTAAACTGGAGTAAAAATGTCGTA
     persimilis  --------------------------------------------------------TGCCTTGC----CCTTT-------TGACACAATTAAAATGTTAAACTGGAGTAAAAATGTCGTA
        virilis  ------------------------------------------------------AGAGCCATAAAGAGGCCTTGCGAGGCTGCTACAATTAAAATGTTAAAC---AGT--AAATAACATA
     mojavensis  TCACTCACTCACTCAC--TCACTCACTGATCTCTCTCGCTCTTTCTGTGA----AGAGCCATAAAATGTGTTCGC---GTTGCTACAATTAAAATGTTAAAC---AGTAAAAATATCATA
      grimshawi  --------------------------------------------------------------------------------TGCCACAATTAAAATGTTAAAC---AGT--AAATGTCATA
        Summary  BBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRR

                 
   melanogaster  AAAGCAATAAAAATCC-CCTAGACGCTAAGAGAATTGCTCTACTTAAGCCGAAAAATGCGT----TGCTCAAAACAAA-TTCC--------------------CAAAAAGTTGCCTCAAA
       simulans  AAAGCAATAAAAATCC-CGTAGACGCTAAGGGAATTGCTCTACTTAAGCCGAAAAACGCGC----TGCTCAAAACAAA-TTCC--------------------CAAAAAGTTGCCTCAAA
      sechellia  AAAGCAATAAAAACCC-CGGAGACGCTAAGGGAATTGCTCTACTTAAGCCGAAAAACGCGC----TGCTCAAAACAAA-TTCC--------------------CAAAAAGTTGCCTCAAA
         yakuba  AAAGCAATAAAAACCCTCAGAGACGCTAAGGGAATTGCGCTAGTTAAGCCGAAAAACGCGC----TGCTCAAAAC-AA-TTCC--------------------CAAAAAGTTGCCTCAAA
         erecta  AAAACAATAAAAACGCGCGGAGACGCTAAGGGAATTGCGCTACTTAAGCCGAAAAACGCGC----TGCTCAAAAC-AA-TTCC--------------------CAAAAAGTTGCCTCAAA
      ananassae  AAA-----------CC-CGGCAGC-----AGAAATTGCTCTATTTAAGGCGAAAAAGATAAGACGTCCTCAAAAC-AT-TTCC--------------------CAAAAAGTTGCCTCAAA
  pseudoobscura  AAATATCGTCTAATCC-CAA------------------------------GAAAAACGCGT----TC----GAAT-AT-TTTC--------------------CAAAAAG------AAAT
     persimilis  AAATATCGTCGAATCC-CAA------------------------------GAAAAACGCGT----TC----GAAT-AT-TTTC--------------------CAAAAAG------AAAT
        virilis  AAAGCCGCA-----CT-CGA------------AATTGCGTGCCTTAAAGTGAAAATTGTGT--------CTAAAG-AA-TTCCGCGTACGCGACT-----CGGCAAAAAGTTGCCTCAAA
     mojavensis  AAATTCGAA----------A------------AACAGAAAACATTTTTGGGCAAAAAGAAG--------CTGACG-GATTTCCGCGTA---------------CAAAAAGTGAGTTGA--
      grimshawi  AAAACGGCA-----CT-CGA------------AATTGGGTTCCTTAAAGTGAAAATTG-GG--------CTAAAG-AA-TTCCGCGTATGCGACTCGCGACGACAAAAAGTTGCCTCAAA
        Summary  RRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GCAAAGCAAGACTAATTTTTAACAAAGC--AGAAAAAAC-----------AC-------AAAAACTCTGAGTCAGTT-CTTCCGGGAACCACGG-AACTATCCGTT-CAAGGGTCACCAA
       simulans  GCAAAGCAAGACTAATTTTTAACAAAGC--AGAAAAAAC-----------AC-------AAAAACTCTAAGTCAGTT-CTTCCGGGAACCACGG-AACTATCCGCT-CAAGGGTCACCAA
      sechellia  GCAAAGCAAGACTAATTTTTAACAAAGC--AGAAAAAAC-----------AC-------AAAAACTCTGAGTCAGTT-CTTCCGGGAACCACGG-AACTATCCGCT-CAAGGGTCAGCTA
         yakuba  GCAAAGCAAGACTAATTTTTAACAAAGC--AGAAAAAAC-----------AGAAAACACAAAAACACTGAGTCAGTT-CTTCCGGGAACCACGG-AACTATTCGCTAAAAGGGTCACCAA
         erecta  GCAAAGCAAGACTAATTTTTAACAAAGC--GGAAAAAAC-----------AA-------AAAAACTCTGAGTCAGTT-CTTCCGGGAACCACGGAAACCATCCGCT-GAAGGGTCACCAA
      ananassae  GCAAAGCAAGACGAATTTTTAACAAAGCCAAGAAAAAAC-----------ATAG-----AAAAACTCTGGGTCACTTGATTCTTGGAA----GA-AAAAATA-----CAAGGGTT----A
  pseudoobscura  GCAGAGCAAAACGAATTTTTAACAAAACAAAAAAAAAAC-----------AC-------AAAAACTCTGAG--AGGG-CTTCCGAGAA----GT-GATCGTG-----CAGGGGTT----A
     persimilis  GCAGAGCAAAACGAATTTTTAACAAAAC---AAAAAAAT-----------AC-------AAAAACTCTGAG--AGGG-CTTCCGAGAA----GT-GATCGTG-----CAGGGGTT----A
        virilis  CCAAGGCGCAGCGAATGGAAAAAAAAA---ACAAAGAAT-----------GG-------AACAAATC----CCAGTG-GTTCCGGGAA-----------------T------------AA
     mojavensis  --GAGAAGAAAAGAAAAGAAGAAGAAA---GAAAAAAAT---------ACAG-------AGCATGGC----CTATTG-GTTCCGAGAA-----------------T------------AA
      grimshawi  CTGAGGCACAGCGAATGTTGAACACAA---AAAAAAAATAATAATAGAATGG-------AAAAAATC----CCAGTG-CTTCCGGGAA-----------------T-AA-------TAAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  A--GGGTTCGTGAGGATC------TGGAACGAACACCCGAACTAGGTCACTGGATCG-TTGG----GCACAAAAAACGCACAATGCCGGCCAA-TAAAAAAGTAGAGC-GCATCGCAGGA
       simulans  AAGGGGTTTGCGAGGATC------AGGAATGGACACCCGAACTAGGTCACTGGATCG-TCGG----ACACAAAAAACGCACAATGCCGGCTAA-TAAAAAAGTAGAGC-GCATCGCAGGA
      sechellia  AAGGGGTTTGCGAGGATC------AGGAACGAAAACCCGAACTAGGTCACTGGATCG-ACGG----GCACAAAAAACGCACAATGCTGGCCAA-TAAAAAAGTAGAGC-GCATCGCAGGA
         yakuba  A--GGGTTGGCGAGGTTC------GGGATCGAACACCCGAACTAGGTCACTGGATCG-TTGG----GCACAAAAAACGCACAATGCGGGCCAA-TAAAAAAGTAGAGC-GCATCCCAGGA
         erecta  A--GGGTTCGCGAGGATG------AGGATCGAACACCCGAACTAGGTCACTGGATCG-TCGG----GCACAAAAAACGCACAATGCCGGCCAA-TAAAAAAGTAGAGC-GCAGCCCAGGA
      ananassae  A--GGGTTA--AAGGATCGTTTCTGGGCCAGAACACCCGAACTAGGTCACTAGATCG--CGG----GCACAAAAAACGCACAATGCCGGATCA-TAAAAAAGTAGAGC-GTATCCCACGG
  pseudoobscura  A--GGGTTA---------------AG----GGACACCCGAACTAGGTCACTGGATCG-CCGC----CAACAAAAAA-----------GGACCA-TAAAAAAGTAGAGC-GCATCCCACAG
     persimilis  A--GGGTTA---------------AG----GGACACCCGAACTAGGTCACTGGATCG-CCGC----CAACAAAAAA-----------GGACCA-TAAAAAAGTAGAGC-GCATCCCACAG
        virilis  A--GGGT-----------------ATACA-GAACACCCGAACTAGACCAGTCGATCGGTCGGACACACA-AAAAAACGCACAAAGCGGCATCGTTAAAAAAGGAGAGC-GCTGCGTGCTG
     mojavensis  A--GGCT-------------------------ACACCCGAACTAGATCGCCCGA------------ACA-AAAAAGTGAACAAAGCGCGATCGTTAAAAAAGGAGAGC-GCTACGTGCTG
      grimshawi  A--GGGTTT-TACGGATC------GTGCT-GAACACCCGAACTAGACCACTCTGTCGATC------ACACAAAAAACACACAATGCGGCATCGTTAAAAAAGGAGAGCGGATACGTGCTG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CATCATTGTCCTG----ACCGA-AACCCTTTCTCG-GG----------TTTTACGATAC----AGAGC-----------------TGCTT---TTTGTGTCCT------------TTTTT
       simulans  CATCATTGTCCTG----GCGGA-AACCCTTTCTCG-GG----------TTTTACGATAC----AGAGC-----------------GGCTT---TTTGTGTCC---------------TTT
      sechellia  CATCATTGTCCTG----GCCGA-AACCCTTTCTCG-GG----------TTTTACGATAC----AGAGC-----------------GGCTT---TTTGTGTCC--------------TTTT
         yakuba  CATCATTGTCCTG----GCGGACAACCCTTTTTCG-GG----------TTTTACAATGT----CGAGC-----------------GGCTT---TTTGTGTCC-----------------T
         erecta  CATCATTGTCCTG----GCGG--AAACCCTTTCCG-AA----------ATTTACGATACAGAGCGAAC-----------------GGCTT---TTTGTGTCC-----------------T
      ananassae  TGATATTGTCCTGTTTTTTGGA-AACCCTTTTTCGAAG----------TTTTACGATGT----CCTTC-----------------TTTTT---TGGGTGTCT------------------
  pseudoobscura  CGA---------G----GAGGG-AACCCTTTCTGG-AAGCCCTCTGCTCTTTACGATCT----AGAGCATGACGGATCTTCTTTAGGTTTATTTTTGTTTTTCTT----T----CTTTTT
     persimilis  CGA---------G----GAGGG-AACCCTTTCTGG-AAGCCCTCTGCTCTTTACGATCT----AGAGCATGACGGATCTTCTTTAGGTTTATATTTGTTTCTCTT----------CTTTT
        virilis  GGACATTGT--------GCGCG------TTTTTCT-GAACC-------CTTTCCGACTT----GC--C-----------------AGTTT---TATGTCATTTTC----TTTGATTTTTT
     mojavensis  AGACTTTGT--------GCGTG------TTTT-----------------------GTGT----GC-GT-----------------GGCTT---AAAAACCCTTTCGGAATTTGAGTTTCA
      grimshawi  AGATATTGT--------ATGAG------TTTTTGG-GAACC-------CTTTCGGAATT----G---T-----------------ACTTT---TATGTCAAC-----------ACTCTTG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMM

                 
   melanogaster  TTTTTGG--------AAACTTCTTCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA--------------------------------------CC
       simulans  TTTTTGG--------AAACTTCTCCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA--------------------------------------CC
      sechellia  TTTTTGG--------AAACTTCTCCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA--------------------------------------CC
         yakuba  TTTTTGG--------AAACTTCTGCATAATTGTAGCAAAAAATTAGTGCAC--ATCTTTTGGAATTTACATAGAACGCGA--------------------------------------CC
         erecta  TTTTTGG--------AAACTTCCTCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA--------------------------------------CC
      ananassae  TTTTGAA--------AATCTTCCCGATAATTGTAGCAAAAAATTAGTGCAAGGAAT-TTGGAAATTTACATAGAACTCGA----------------------------------------
  pseudoobscura  TTTTTCGTTGGGCATAGTATTCCCGATAATTGTGGCAAAAAATTAGTGCAC--GAC------GATTTACATAGAACTCGACAACTGGCGAG-------CTACGACCTACGACCTACGACC
     persimilis  TTTTCGGTTGGGTATAGTATTCCCGATAATTGTGGCAAAAAATTAGTGCAC--GAC------GATTTACATAGAACTCGACAACTGGCGAGCTACGACCTACGACCTACGACCTACGACC
        virilis  TTTTCCC--------CGTTTCGGGAAAAATTGTAGCAAAAAATTGGTGCAG--C--------AATTTACATAGAACT-GA--------------------------------------CC
     mojavensis  TCTC-------------------AAGAAATTGTAACAAAAAATTGGTGC--------------ATTTACGTAGAAGT-GA--------------------------------------CC
      grimshawi  TTTTTTC--------GGGAACTGGCAAAATTGTAGCAAAAAATTGGTTCAC--TCTTTTTCGAATTTACATAGAAGT-GG--------------------------------------CC
        Summary  MMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTCG---------------------------------------------------------------------------------TTGACACTGCGTTTAACTTTTGATTTG---GCATC
       simulans  TTCG---------------------------------------------------------------------------------TTGACACTGCGTTTAACTTTTGATTTG---GCATC
      sechellia  TTCG---------------------------------------------------------------------------------TTGACACTGCGTTTAACTTTTGATTTG---GCATC
         yakuba  TTCG---------------------------------------------------------------------------------TTGACACTGCGTTTAACTTTTGATTTG---GCATC
         erecta  TTCG---------------------------------------------------------------------------------TTGACACTGCGTTTAACTTTTGATTTG---GCATC
      ananassae  ----------------------------------------------------------------------------------------GTATGACCTTTAACTTTTGATTTG---GCATA
  pseudoobscura  TTCGATC------------------------------------------------------------------------CATGGTTTGACATTGCATTTAACTTTTGATTTGACAGCATC
     persimilis  TTCGATC------------------------------------------------------------------------CATGGGTTGACATTGCATTTAACTTTTGATTTGACAGCATC
        virilis  TTGGCGG----------GAGCAGCGGAATG-------------------GACATGTACGATAATGATAATGCCGCTGA-CAT------ATATTTCATTTAACTTTTGATTTG---GCATC
     mojavensis  TTGGCCAAGGGCGACTCGAGTAACTGAGTAGC----------------TGGCCTGTA----------------GCTGGCCAT---TTGACATTTCATTTAACTTTTGATTTG---GCATG
      grimshawi  TTCGAAA----------GAGCA-CTGAGAGATGATGATGATATTGCCGTGGCCAGCT--AAACTAGCAAGGATACTC--TGT---GTGACAACTCATTTAACTTTTGATTTG---GCATC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTGACTGAGTTCGAAGGAGAAGGGGAAAAAAAATGT------AAAA-TGGTGG--------CGGGAAAG---------------------------------------------------
       simulans  TTGACTGAGTTCGACGGAGCAGGGG-AAAAAATTGTATTGTAAAAA-TGGTGG--------CGGGAAAG---------------------------------------------------
      sechellia  TTGACTGAGTTTGACGGAGCAGGAG-AAAAAATTGT------AAAA-TGGTGG--------CGGGAAAG---------------------------------------------------
         yakuba  TTGACTG-------------AGGGG-CAAAAA-TGT---TGGAAAA-TGGTGGCGGA----CGGGAAGG---------------------------------------------------
         erecta  TTGACTGAGTACGGC-CACCAGGGG-AATAGA-TGC------AAAA-TGGTGG--------CGGGAAAG---------------------------------------------------
      ananassae  TTGACTGGCGGAGGGCGAGAGTTGG-CGGAGT-TGG------AAAA-TGGCGGGAAATGTCAGCGAAAG---------------------------------------------------
  pseudoobscura  TTGACTG-------------AGAGG-GAAAAC-TGA-TGAGGGGAA-GGATGC--------AGGGAAAG---------------------------------------------------
     persimilis  TTGACTG-------------AGAGG-GAAAAC-TGA-TGAGGGGAA-GGATGC--------AGGGAAAG---------------------------------------------------
        virilis  TTGACTG---------------TCG-GACTGC-TGT------TGAGCGGATTT--------TTGGGAAAACTG-----------------------------------------------
     mojavensis  TTGAC---------------------GACG---TGT------TTAA-GGATTT--------TTGGGAAAATCGCTCTATGTGGACGTATGTATGTGTGTATGTATATGTGTATGCATGTA
      grimshawi  TTGAA---------------------GAGT-----T------TTAA--GGCGT--------TTGGGAAACCAGTCGAATATGG-------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAATGGGCCGTAATCCTTT-GCTAAACGCAGCA-
       simulans  ------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAATGGGCCGTAATCCTTT-GCTAAACGCAGCA-
      sechellia  ------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAATGGGCCGTAATCCTTT-GCTAAACGCAGCA-
         yakuba  ------------------G------------CTGGATGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAATGGGCCGTAATCCTTT-GCTAAACGCAGCA-
         erecta  ------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAATGGGCCGTAATCCTTT-GCTAAACGCAGCA-
      ananassae  ------------------GATGGCGTAGCGAC----TGGTT---------AATGGCTTTACAACTTGTTGTCTATAATTATGGTTAAAATGGGCCGTAATCCTTT-GCTAAATGCAGC--
  pseudoobscura  ------------------GATGTTGC-----C----TGGTT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTTAAAATGGGCCGTAATCCTTT-GCTAAATGCAGCA-
     persimilis  ------------------GATGTTGC-----C----TGGTT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTTAAAATGGGCCGTAATCCTTT-GCTAAATGCAGCA-
        virilis  ------------------G------------C----TACGA---------AATGGCTTTACAACTTGTTGTCACTAATTATGGTCGAAATGGGCCGTAATCCTTT-GCTAAATGCAGCAA
     mojavensis  TGTATGCATGTGGCTGTAG------------C----TATAGCTTTGCCTCGGCAACTTTACAACTTGTTGTCTCTAATTATGGTTGAAATGGGCCGTAATCCTTTAGCTAAACGT-GCA-
      grimshawi  ------------------C------------C----GACCA---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTTGAAATGGGCCGTAATCCTTT-GCTAAATGCAGCAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ACACAG-ACCGCCC------------CGT-TTCGC-CACGAATTCC-------AGTTC------ATCCGAGTG-------------------------------GCC----GAAT-CCAT
       simulans  ACACAG-ACCGCCC------------CGT-TTCGC-CACGAATTCC-------AGTTC------TTCCGAGTG-------------------------------GCC----GAAT-CCAT
      sechellia  ACACAG-ACCGCCC------------CGT-TTCGC-CACGAATTCC-------AGTTC------TTCCGAGTG-------------------------------GCC----GAAT-CCAT
         yakuba  ACACAG-ACCGCCC------------CGT-TTCGCACAGTTCTTCC-------AGTTC------TTCCGAGTG-------------------------------TCCGGCTGAAT--CAT
         erecta  ACACAG-ACCGCCC------------CGT-TTCGC-CAGTTC--CC-------AGTTC------TTCAGCGTG-------------------------------GCT-GCGGAAT--CAT
      ananassae  ACACAG-ACCGCCC------------CCTGCTCGCCCAAAAATTCC--GTCCGAATTC----AGTTCCGAGTGAAATGAAACCAAAAGTCCTGCAGTCAGGATTGCA----GGATATCGT
  pseudoobscura  ACACAGCAACGCCC------------CAG-----C-CGAGCATCCCACGAAAGAGCCCGGAGAGATCCGAGAG-------------------------------ATG----GAAA-----
     persimilis  ACACAGCAACGCCC------------CAG-----C-CGAGCATCCCACGAAAGAGCCCGGAGAGATCCGAGAG-------------------------------ATG----GAAA-----
        virilis  ACAGAG-TACGCCC------------CGT-TTCCC---------------------------------------------------------------------ACG----AAAT-----
     mojavensis  --------ACGCCT------------CGT-TTCGC---------------------------------------------------------------------TAG----AA-------
      grimshawi  ACAGAG-AACGCCCCGAGGCAGCCAGCGA-TTCGC---------------------------------------------------------------------GGG----AAAT-----
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -TGAGTTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC---------------------------------CTTCGC----------
       simulans  -TGAGTTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC---------------------------------CTTCGC----------
      sechellia  -TGAGTTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC---------------------------------CTTCGC----------
         yakuba  -TGAGTTTCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC---------------------------------CTTCGC----------
         erecta  -TGAGTTTCCGCGAAATCCATGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC---------------------------------CTTCGC----------
      ananassae  ATGGATTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CAGTAAGCC---------------------------------CTTCGC----------
  pseudoobscura  -T---TTCACGCGAATTCCGCGTCATGGTTAAACGCGACTAATCCTTCCG------------CAGTAAGCC---------------------------------CTT-------------
     persimilis  -T---TTCACGCGAATTCCGCGTCATGGTTAAACGCGACTAATCCTTCCG------------CAGTAAGCC---------------------------------CTT-------------
        virilis  --------------------CGTCATGGTTAAACGCGGCTAATCCTTGC------CCAGGACCAGTACTCAGGCTCAGGAAACAGTTCCAGCCA------AGCCCTTCACTGAACTCCGA
     mojavensis  ---------------------TTCATGGTTAAATGTGACTAATCCTTTTG-----CCACGAACAGCAATCC--------------TTGCAGCAG------CATCCTTCGC----------
      grimshawi  --------------------CGTCATGGTTAAATGCGACTAATCCTTCCGAGCAACCAAGCCAACCAAGCC--------------AACCAGCCAGCAATCCCTTCTTCACTGAACT----
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------------------AGCGACCTGAACCCGGTTCAGTTCACGGCAGTTCAG-TTCGGTGGGCGTTTTTGTTTAGTTTCGAAATCAAAATATTAGCAAA---CAC----------
       simulans  ---------------------AGCGACCTGAACCCGGTTCAGTTCACGGCAGTTCAG-TTCGGTGGGCGTTTTTGTTTAGTTTCGAAATCAAAATATTGGCAAA---CAC----------
      sechellia  ---------------------AGCGACCTGAACCCGGTTCAGTTCACGTCAGTTCAG-TTCGGTGGGCGTTTTTGTTTAGTTTCGAAATCAAAATATTGGCAAA---CAC----------
         yakuba  ---------------------AGCGACCTGAACCCGGTTCAGTGCACGGCAGTTCAGTTTTGGTGGGCGTTATTGTTTAGTTTCGAAATCAAAATATTGGCAAA---CAC----------
         erecta  ---------------------AGCGACCTGAACCCGGTTCAGTTCACGGCAGTTCAG-TTTGGTGGGCGTTTTTGTTTAGTTTCGAAATCAAAATATTGGCAAA---CAC----------
      ananassae  ---------------------TCCGACCTGGACCTGG---------------------TTCGGTGGGCG-TATTGTTTAGTTTCGAAATCAAAATATTAGCAAA---CAC----------
  pseudoobscura  ---------------------------TCGGACTCGGGCCAGGACTCGG---------T--GGTGGGCG-TATTGTTTTGTTTCGAAATCAAAATATTAGCAAATGTCGG----------
     persimilis  ---------------------------TCGGACTCGGGCCAGGACTCGG---------T--GGTGGGCG-TATTGTTTTGTTTCGAAATCAAAATATTAGCAAATGTCGT----------
        virilis  CTGTCCGACTGTCCGACTGTCGGTGACCTGAACCCG--------------------G-TTCGGTGGGCG-TATTGTTTATTTTCGAAATCAAAATATTGGCAAA---CAC----------
     mojavensis  --------CCGCCCGCCGGCTGCTGACCTGGACTCGCT----AGC-----------G-CTCTGTGGGCG-TATTGTTTATTTTCGAAATCAAAATATTTGCAAA---CACTGCGAATAAC
      grimshawi  --------TTATGCTCCGGCTGCTGACCTGAACCCGGTTCGGAGC----------AG-TTCGGTGGGCG-TATTGTTTAGTTTCGAAATCAAAATATTAGCAAA---CAC----------
        Summary  BBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------GCTGAAG-----GCAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGA-------------ACACATCCTTTCG--------CAACCTTGGACC
       simulans  ------GCTGAA------GGAATACG-------CCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGA-------------ACACATCCTTTCG--------CAACCTTGGACC
      sechellia  ------GCTGAAG-----GGAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGA-------------ACACATCCTTTCG--------CAACCTTGGACC
         yakuba  ------GCTGAG------GGAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGAACCCGA------CACACATCCTTTCG--------CAACCTTGGACC
         erecta  ------GCTGAG------GGAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGAA------------ACACATCCTTTCG--------CAACCTTGGACC
      ananassae  -----TGACGAAAAGGGCGAAATACG-------G-T------GAAAGGGCAAATG--TGCAAGGATTAAGCCGA-------------GC-CATCCTTTCG--------CAACCTTGAGCC
  pseudoobscura  ------CCTGAA------AGGGCAAG-------GAT------GTGCCGG--ACTG--TGCAAGGATTAAGCCGCGAACGAGAACACGGCACATCCTTTCG--------CAACCTTGG---
     persimilis  ------CCTGAA------AGGGCAAG-------GATGTGCCGGTGCCGG--GCTG--TGCAAGGATTAAGCCGCGAACGAGAACACAGCACATCCTTTCG--------CAACCTTGG---
        virilis  ------ACACGG------CGAATACG-------GGT------AAACG---CGGCG--TGCAAGGATTAAGCCGCCGA----------GCACATCCTTTCG--------CAACCTTGGCA-
     mojavensis  CTAGAACCGAGG------CGAGGAAGAAGAAGTGGT------AGGCG--TCGTCGATTGCAAGGATTAAGACG-----------------CATCCTTTCGCCTTGACACAACCTTGAC--
      grimshawi  ---------TGG------CGAATACT-------GGA------GAA-----CTGTG--TGCAAGGATTAGCGCG--------------ATACATCCTTTCG--------CAACCTTGGAAG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTTC----TAACC------CGAA-------------------TGCGAT---------TTCGAT
       simulans  CTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TTTCC----TAACC------CGAA-------------------TGCGAT---------TTCGAT
      sechellia  CTTCCACGTTCGTG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTCC----TAACC------CGAA-------------------TGCGAT---------TTTGAT
         yakuba  CTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTCC----TAACCCGAATGCGTT-------------------TGCGAT---------TGCGAT
         erecta  CTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTCC---------------CGAT-------------------TCCGAT---------TCCGAT
      ananassae  -------------A-GGCACGCTCGC--AATTTTATGA-CTT--------------TCGCC----CAACC------CGCC-------------------GCCGAT---------TCTGAA
  pseudoobscura  ---CAGCCTTGGGA-CACACGCTCGC--AATTTTACGA-TC---------------------------CC------TGAA-------------------TGC--T---------TGCCTC
     persimilis  ---CAGCCTTGGGA-CACACGCTCGC--AATTTTACGA-TC---------------------------CC------TGAA-------------------TCC--T---------TGCCTC
        virilis  ---------------AACACGCTCGC-GACTTTTATGA-CGT--------------TTGCTGCCACATGC------CACAAACTAGCTGCGACTGCGACTGCGACTGCGCCTGCCTCATT
     mojavensis  ----------------ACACGCTCGC-TGATTTTATGG-CATTTCATTGGCAAAAGTTGTTGCCACATGC------CACA-------------------TGCCAC-ACAGCTAACTATGT
      grimshawi  C--ACATTTCTGCAGAGCACGCTCGCTTGATTTTATGACCAC--------------TACTTGCCACATGC------CAAA---------------TCATCGCATC-----CTTCTTCGTC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TCCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCTAAGATCCTCGATTG--------------------TTTC
       simulans  TTCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCTACGATCCTCAATTG--------------------TTTC
      sechellia  TTCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCAACGATCCTACGATCCTCAATTG--------------------TTTC
         yakuba  TCCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCT-------TCGACT-------------------------
         erecta  TCCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCT-------TCGATTG--------------------TTTC
      ananassae  TCCGAATCCTCGAATTCCTTCTCTATATTGACTTTGTCTTTGGCGAAAA--CATGGCTCGCGGA--TCCTTGGCCCGTTCACGCGACACACCATTGTCCTGCGATTCGCAGGACCCTTTC
  pseudoobscura  CTTGC--------------------------------CTCTGCCAC-----TCTGCCA---------CTCTGCCACATGCGCGCGTCTCTCATTTG--------------------T---
     persimilis  CTTGC--------------------------------CTC------------CTGGC----------CTCTGCCACATGCGCGCGTCTCTCATTTG--------------------T---
        virilis  CTTGG--------------------------------TCCTGGCTAATA-ATGTGCAAT-TGTTCA-----GCGAAGAGTTGACTTTCGTTTTTTT--------------------CC--
     mojavensis  TTTCC--------------------------------TCCTGCCTC---------------------------------CTGCCTCCTGTCTCCTG--------------------CC--
      grimshawi  CGCAG--------------------------------TCCTGGCTAATA-ATGTGCAATGCGCACG-------------CTGCTTTTGTTCAGTTT--------------------TC--
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMM

                 
   melanogaster  GTCCTAAGAGTTGACTTTCG--TTTTTTAAC-----------------TCGTCCCGTGCCGAAG--------GACAATC--CTTTGC------CGATTTGCCCAT--TGTTGCGGTTGTC
       simulans  GCCCTCCGAGTTGACTTTCG--TTTTTTAAC-----------------TCGTCCCG-GCCGAAG--------GACAATC--CTTTGC------CGATTTGCCCAT--TGTTGCGGTTGTC
      sechellia  GCCCTCCGAGTTGACTTTCG--TTTTTTAAT-----------------TCGTCCCG-GTCGAAG--------GACAATC--CTTTGC------CGATTTGGCCAT--TGTTGCGGTTGTC
         yakuba  ----------TTGACTTTCG--TTTTTTAAC-----------------TCGTCCCT-GGCGAAG--------GACAATC--CTTTGC------CGATTTGTCCAT--TGTTGCGGTTGTC
         erecta  GTCCTCCGAGTTGACTTTCG--TTTTTTAAC-----------------TCGTCCCT-GCCGTAG--------GACAATC--CTTTGCCCAATGCGATTGGCCCAT--TGTTGCGGTTGTC
      ananassae  AGTCGCAGGATTGACTTTCG--TTTTTTAAC-----------------TCGTCCTT-GCCGTGC--------AACAAGC--CTTTGC------CGATTTTTCCAT--TGTTGCGGTTGTC
  pseudoobscura  ----------TTGACTTTCG--TTTTTTAA---------------------------GC--------------GTAGCC--CTTCGA------TGGCATATCCTT--TGTTGCGGTTCTT
     persimilis  ----------TTGACTTTCG--TTTTTTAA---------------------------GC--------------GTAGCC--CTTCGA------TGGCATATCCTT--TGTTGCGGTTCTT
        virilis  -------------GCTTTTTACTTTTTTAACC----------CGCGCGTTGTCCTT-GCCCAA---------GCCTTTC--CCCTGC------AGCCCTTT------TGTTGCGGT----
     mojavensis  -------------ACCTTCGTCCTGGCTAATAATGTGCAATGCGCACGCTGCCTTT-GTTGCACTTCTAGTTGACTTTCGTTTTTTC------AGCCTTTTTTATCCTTTTTTCCT----
      grimshawi  ---AGCAATGTTGACTTTCAGTTTTTTTAACC-----CGACCCACGGCATGTCCTT-GCCAAGCCTTTTTCCGGCTGCC--TTTGGC------AAGCCTTT------TGTTGCGGT----
        Summary  MMBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TCGACTCC--TTT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGCGTCCCCTTTGTGGCGAATTTCG------ACCCGG-----GATC-----GCAG
       simulans  TCGACTCC---TT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGCGT--CCTTTGTGGCGAATTTCG------ACCCGG-----GATC-----GCTG
      sechellia  TCGACTCC---TT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGCGT--CCTTTGTGGCGAATTTCG------ACCCGG-----GATC-----GCTG
         yakuba  TCAACTCC---TT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGTGT--CCTTTGTGGCAAATTTCG------ACCCGG-----GATC-----GCTG
         erecta  TCAACTCC--TTT------TTTTGCCAGAGGG---TTACG---GCCC-TTTGTGGTGGCGATTGTCGAGT--CCTTTGTGGCGAATTTCG------ACCCGG-----GATC-----GCCG
      ananassae  ACAACTCCTTTTT------TTGTGCCAGAGGG---TTGCA---TCCT-TTTGTGGTGGCGATTGTT-TAT--CCTTTGTGGCCATCCTC--------CCGGG-----GTTC-----GCTG
  pseudoobscura  TCTACTCT--TTTTTTTTCTTTTTAGAGAGGG---TTGCA---ATCCTTTTGTGGTGACAATTGTGTC----CCTGTGTGTCGTGCTCC--------TCGGG-----GTTCCCTCAGCCT
     persimilis  TCTACTCT--TTT------TTTTTAGAGAGGG---TTGCA---ATCCTTTTGTGGTGACAATTGTGTC----CCTGTGTGTCGTGCTCC--------TCGGG-----GTTCCCTCAGCGT
        virilis  ----CGCA--TTT------TTTA-----CGGG---TTGCACACGGCA-----------CAATTGCCAC----CTTTTGTGGCAATTGTCG----TCATTGTGCTGCCGGCT-----GC--
     mojavensis  ----CACA--TTT------TTTAGCC--CGCGTCCTTGCCCGAAGCC-TTT-------CGCCTGCAGC----CTTTTGTTGCGGTCGCAT----TTTTTATG-----GGTT-----GCAA
      grimshawi  ----CGCA--TTT------TTTA-----CGGG---TTGCAC--GGCA-----------CAATTGCCGC----CTTTTGTGGCAATTGTCGGCAATTGTAGTA-----GCTC-----GT--
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTTTTTACGATCCTCAACGG----G----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTGCTCTGCCATCCTCTGACCCGTTCAGTTCAA
       simulans  TTTTTTACGATCCTCAACGG----G----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTGCTCTGCCATCCTCTGACCCGTCCAGTTCTG
      sechellia  TTTTTTACGATCCTCAACGG----G----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTGCTCTGCCATCCTCTGACCCGTCCAGTTCAG
         yakuba  TTTTTTACGATCCTCAACGG----C----------------TTTTACG------ACC--------TCCGCCCGTTTTTTAAGCCTTTCTGCTCTGCTCTGCTCTGACCCGTTCAGTTCAG
         erecta  TTTTTTACGATCCTCAGCGG----C----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTGCTCTGCTCTCCTCTGACCCGTTCAGT----
      ananassae  TTTTT-----TTCTCAATAC----G----------------TTTATGG---TGCATC--------CGCGTCCGTTTTTTAAGCCTTTTTGCTCTGCTCTCCTCTGACCCGTTCAGT----
  pseudoobscura  TTTTTTACGAACCTCAAAGGATGCG----------------TTTTATG------GCCGTCCGCCGTCCGCTCGTTTTTTAAGCCTTTCTGCTCTGCTCTGCTCTCTCC---TCAGATCAG
     persimilis  TTTTTTACAAACCTCAAAGGATGCG----------------TTTTATG------GCCGTCCGCCGCCCGCTCGTTTTTTAAGCCTTTCTGCTCTGCTCTGCTCTCTCC---TCAGATCAG
        virilis  -----------TCGCAGTGC----G------AAGGTCCTTTTTTTGCA--------------------GCGTTTTTTTTAAGCCTTTTTGCTCTGCTC----------------------
     mojavensis  TCCTTT----GTGGCAAATC----GGTTGACATGGTCGATGTCCTGCAG----GACC--------TTCGCTTGTTTTTTAAGCCTTTCTGCTCTGCTCTGCT------------------
      grimshawi  -----------CCTCGATCC----G------CACGTCTTTTTTTTATGGCGAAGGTC--------CTTCCTTTTTTGTCAAGCCTTTCTGCTCTGCTC----------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  A-----TCAGTTCGGTG-TCAA---CTCTTTCGG------GTTCTCATAGCGGGTTGT--------AAAATCC----GGCTGGA
       simulans  ATCAGTTCAGTTCGGTG-TCAA---CTCTTTCGG------GTCCTCTTCGCGGGTTGT--------AAAATCC----GGCTGGA
      sechellia  ATCAGTTCAGTTCGGTG-TCAA---CTCTTTCGG------GTCCTCTTCGCGGGTTGT--------AAAATCC----GGCTGGA
         yakuba  A-----TCAGTTCGGGG-TCAA---CTCTTTCGG------GTTCTCTTCGCGGGTTGT--------AAAATCC----CTCTGGA
         erecta  ------TCAGTTCGATG-TCAA---CTCTTTCTG------GTCCTCTTCGCGGGTTGT--------AAAATCC----GTCAGGA
      ananassae  ------TCAGTTCGGGG-TCAA---CTCTTTAGG------ACTTTCT----GGGCTGT--------AAAATCCT---TTCCCAA
  pseudoobscura  A-----GCTCTCCGAAGATCAG---TTTTTTGGG------CTGCT------GGGTTGT--------AAAATCTCTCGCGCTGGA
     persimilis  A-----GCTCTCTGAAGATCAGTTTTTTTTTGGG------CTGCT------GGGTTGT--------AAAATCTCTCGCGCTGGA
        virilis  ------------------TCAA---CTCTTTCTG-CCAGAGTTCAGGTCGAGAGTTGTCTGTATCGTAAATAT----TAATGGA
     mojavensis  ----------------G-TCAA---CTCTTTTTGCCCAGAGTTCAGTTCGAGCCGTGTTTTT----------------------
      grimshawi  ------------------TCAA---CTCTTTTTG-CCAGAGTTCAGGTCAGGAGTTGT---------AAATAT----CACTAGA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB


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