crm
                 
   melanogaster  TTGCGGTTTCTACTATAAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACA--TTTGAGTGACAT-CATATCAACA--------TCTTC--AA-------CGCACCTCTGC
       simulans  TTGCGGTTTCTACTGTAAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACA--TTTGAGTGACAT-CATATCAACA--------TCTTT--AA-------CGCACCTCTGC
      sechellia  TTGCGGTTTCTACTGTAAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACA--TTTGAGTGACAT-CATATCAACA--------TCTTT--AA-------CGCACCTCTGC
         yakuba  TTGCGGTTTCCACAATGAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACA--TTTGAGTGACAT-CACATCAACA--------TCTTC--AT-------CGCACCTCTCC
         erecta  TTGCGGTTTCCACACTAAGGT-TTTGTATAATTGGA-TTGAC---------TTGCGGACG--TTTGAGTGACAT-CATATCAACA--------TCTTC--AT-------CGCACCTCTAC
      ananassae  GTGCGGTTTCCACTGCGTAGT-TCTGCCTAATTGGA-TTGAC---------TTGCAGACA--TGTGAGTGACAT-CACGTCGTCA--------TCTCC--AT-------CGCACCTTTCC
  pseudoobscura  GTGCGGTTTCCAATGCGTAGT-TTTGCTTAATTGGA-TTGAC---------TTAGGGACA--TGTGACTGACAT-CACGTCATCA--------TCTGC--TT-------CTCACCTTTTC
     persimilis  GTGCGGTTTCCAATGCGTAGT-TTCGCTTAATTGGA-TTGAC---------TTAGGGACA--TGTGACTGACAT-CACGTCATCA--------TCTGC--TT-------CGCACCTTTCT
        virilis  GTGCGGTTTCC-------CGC-TTTGTTTAATTGGA-TTGCCTACA-G---CCGTGGACA--TGTGAGTGACAT-CACGTCATCG---CAAAGCCATC--AA-------CGCACCTTTCC
     mojavensis  GTGCGGTTTCCA------CGC-TTTGTTTAATTGGATTTGCCTGCGCG---CTGCGGACA--TGTGAGTGACAT-CACGTCGTCG--CCAAAGTCATCAAAA-------CGCACCTTTTC
      grimshawi  GTGCGGTTTCC-------CGCTTTTGTTTAATTGGA-TTGGATATG-GGACATGTGGACATGTGTGAGTGACATCCACGTCATCGGGGCAAGCACATCTTCAGCATTCTCGCACCTTTTT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATTTC------------TGGCACTGATTT------------CAAAACAAGTATTGCCACAAACGAGCGTAACACAAATTAGCCAATATCGACCGACGTTCAATTCACATTATTAGGTTGA
       simulans  ATTTC------------TGGCACTGATTT------------CAAAACACGTCTTGCCACAAACGAGCGAAACACAAATTAGCCAATATCGACCGATATTCAATTCACATTATTAGGTTGA
      sechellia  ATTTC------------TGGCTCTGATTT------------CAAAACACGTCTTGCCACAAACGAGCGAAACACAAATTAGCCAATATCGACCGATATTCATTTCACATTATTAGGTGGA
         yakuba  ATTTC------------TGGCACTGTTTT------------AAAAACACGACTTGCCACAAACGAGC------CAAATTAGTCAATATCGACCGAGACCTAATTTACTTGAATAGGTTGA
         erecta  ATTTC------------TGGTACTGATTT------------GAAAATACGACTTG------------------------------------------------TAACTTCCAGAAGTTGA
      ananassae  GTTTT------------TGGCGCCACTCTAAAATCGC-ACGCAAAACGCGCGTT-CCGTGAACGGCCATGACTGGGATTGGGGCTTATCA-------------TTCCGCTTTGAAGAAAA
  pseudoobscura  ATTTCCATTTTTGGTTTTGGCGCCGCTTCAAAATCGC-ACGCAAAACGCGT----CCATGAACGGCCATGACTGAGACT------------------TTCAAT---CCCTTTTAAGTTGA
     persimilis  ATTTCCATTTTTGGTTTTGGCGCCGCTTCAAAATCGC-ACGCAAAACGCGT----CCATGAACGGCCATGACTGAGACT------------------TTCAAT---CCCTTTTAAGTTGA
        virilis  ACAAT------------CGGCA--------------------------------------------------------------------------------------------------
     mojavensis  ACAAT------------CGTCGAGTCAATTTTTTGGCGCCGCAAAACAA-----GCCACCCATTTGGGTGGGCTAGACTAACAGATACCCTCAGCTG---------------TGGGCTGA
      grimshawi  TGCA----------------------------------AAGAAAAAAAA-----------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAACGGA--TAATAT------------------AATATA-TT-------------------------TTACCAA------TTATGTA----AACGAAAACAACT-GATATATATGTCT-G
       simulans  AAACGGA--TAATAT------------------AATATA-TT-------------------------TTACCAA------TTATGTAAGGTAACAAATACAACT-GATATATTTGTCT-G
      sechellia  AAACGGA--TAATAT------------------AATATA-TT-------------------------TTACCAA------TTATGTAAGGTAACAAATACAACT-GATATATTTGTCT-G
         yakuba  AAACGAA--TAATTTTT---CGGGTTGGTGGCTTAAATA-TGGCTGTCTTAAAAACTAAATAGACAGTTACCAGCAATACTTATTTCTTTAAAAAATT--------ATATATTTTACT-A
         erecta  ---------------------------------TATATA-CG--------------------------------------TTATATAATTAAACATGT--------AGATCTT-------
      ananassae  TAGCGCACTTGGGAT------------------TATAAA-TC--------------------AATCTTGTTTTG------TCCTGTAGCTAAATTAGTACCACC-TATATGTATG-----
  pseudoobscura  CAAAAGA--TTGG--------------------AATGTA-TT-------------------------TTTTTTA------CTATAGAAA-AAATAAG--------TATATGTATATCGAA
     persimilis  CAAAAGA--TTGG--------------------AATGTATTT-------------------------TTTTTTA------CTATAGAAA-AAATAAGTACATACATATATGTATATCGAA
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ACAGAAT--TAAAATACGCTC------------AATCTA-TG-------------------------T------------TTATTTAAC--GAGAAACTCTACTTGGTCATTCTG----C
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGTTGAGCATTAGTGAG--ATT------------GGCGC------ATTAAATTTGCTATATGAA-------------------------CAGATTTATTT-----TTCTGCTTATATGGT
       simulans  AGTTAAGCATTAGTGAG--ATT------------GGCGC------ATTAAATTTGCTATACGAA-------------------------GAGATTTATTT-----TTCCTCTTATATGGT
      sechellia  AGTTAAGCATTAGTGAG--ATT------------GGCGC------ATTAAATTTGCTATACGAA-------------------------GAGATTTATTT-----TTCCTCTTATATGGT
         yakuba  ATTTGCATATAAGTTAA--ATT-------------ACACAAGTTGATATATATTGATATATAATTAAACATGAAACCCTTAAGAAGTTGGGCATTGATTTTTTTATTTAGCGTATATTAA
         erecta  -------TGGAAGTTAG--GC------------------------ATTGATGCTGTTTTATGAC----------------------TTGCTTATTTATTT-----TTTAGCTTATATTAA
      ananassae  -GAGCAGTACCAGCAAGCAATT------------GCTTT------ACTCATTTTG----------------------------------TGGGTTAATTG-----GTCATATCAT-----
  pseudoobscura  AGATAAAGATGTGCTCA--ATTCTGAGAGTGGAACACAC------ACTAACCGTGATGTGAAAA----------------------TTGCGGACCAAATT--------------------
     persimilis  AGATAAAGATGTGCTCA--ATTCTGAGAGTGGAACACAC------ACTAACCGTGATGTGAAAA----------------------TTGCGGACCAAATT--------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  AGACGAACG-------G--ATT------------GATGA------ACAGA--TTGAAATATGAG-------------------------CAGATATAT----------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTGAAGCTAATATTTCGTGGTTAAATCTGCCATCCTATT------------TGTTTTAGCGATATTT-GTTGCCATGCCGATTTTTGTCC---------TCTC-----TTTTAAA-A---
       simulans  CTGAAGCTCATATTTCGTGGTTAAATCTGCCATCGTATT------------TGTTTTAGCGATATTT-GTTGCCATGTCGATTTTTGTCC---------TCTC-----TTTTAAA-A---
      sechellia  CTGAAGCTCATATTTTATGGTTAAATCTGCCATCGCATT------------T-TTTTAGCGATATTT-GTTGCCATGTCGATTTTTGTCC---------TCTC-----TTTTAAA-A---
         yakuba  CTGGGACTTATATTTCGTGGGTAAATCTGCCATCGTA----------------TTCTGTCGATATCTGGTTGCCATGCCGGTTTTTGTCC---------TTCCCCGCATTTTAAACA---
         erecta  CTGGCACTTCTATTTCGTG---AATTCTGCCATCGTATT------------TGTTCTGTCGATATCT-GTTGCCATGCCGGTTTTTGTCC---------TTCCCCGCTCTTTTAA-A---
      ananassae  ----TGCCTACGTGACACG------------------------------------CTGCCGCGTTTT-GTTGCCAAGTCTACTTTTGTTTTCGTACAGGTCCCCCACTCTTTGAA-ACTG
  pseudoobscura  ----CGTCTTTCTCCCATGGGTTAATGGATCACCTCACTACCTACTTAATGTGTTCCAGCTCTTTCT-GTTGCCATGTGTATTTTCGACC-------ATTCCCCCACTCTTTGAC-A---
     persimilis  ----CGTCTTTCCCCCATGGGTTAATGGATCACCTCACTACCTACTTAATGTGTTCCAGCTCTTTCT-GTTGCCATGTGTATTTTCGACC-------ATTCCCCCACTCTTTGAC-A---
        virilis  ----------------------------------------------------------------------------------CGTCGTAC---------T--------CTTTGAC-A---
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ----------------------------------------------------------------------------------CTTTATAC---------T--------CTTTGAC-A---
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----CGTTTGGAGCTTC-TGGC-----TGTGTTATTTAAA------AAATAAATAGCTTTGTTGCTGATAACAAACTGGTTGACT--AAATGCGCTCCGGGTGCATTGTACGACCTACTG
       simulans  ----CTTTTGGAGCTTC-TGGC-----TTTGTTATTTGAA------AAACAAATAGCTTTGTTGCTGATAACAAACTGGTTGACA--AAATGCGCTCCGGGTGCATTGTACGACCTACAG
      sechellia  ----CTTTTGGAGCTTC-TGGC-----TTTGTTATTTGAA------AAATAAATAGCTTTGTTGCTGATAACAAACTGGTTGACT--AAATGCGCTCCGGGTGCATTGTACGACCTACTG
         yakuba  ----CGCTTGGAGCTTC-TGAC-----AGTATTATTTGAA------AAATAAATAGCTTTGGTGCTGATAACAAACTGGTTGACT--AAATGCGCTCCGGGTGCATTGTACGACCTACTG
         erecta  ----AGCTTGGAGCTTC-TGGC-----AGTATTATTTGAA------AAATAAATAGCTTTGGTGCTGATAACAAACTGGTTGACT--AAATGCGCTCGGGGTGCATTGTACGACCTACTG
      ananassae  AGACCGAAAGGAGGCTC-CGGC------GAGTTCTTTAAA------AAATAAATAGCTTTGGCGCTGATAACAAACTGGTTGACTAAAAATGCGCTCCGGGTGCATTGTACGACCTATTG
  pseudoobscura  ---CCGAAAGGAGACTCTTGGC-----AAGTTCGCCTGAA------AAATAAATTGCTTTGATGCTGATAAGAAACTGGTTGACTAAAAATGCGCCCCGGGTGCATTGTACGACCTATTG
     persimilis  ---CCGAAAGGAGACTCTTGGC-----AAGTTCGCCTGAA------AAATAAATTGCTTTGATGCTGATAAGAAACTGGTTGACTAAAAATGCGCCCCGGGTGCATTGTACGACCTATTG
        virilis  ---CCGAAAGGAGATTT-TTTTGTGCAAATA-TTGCCGAATAAGCTAAAGAA---------TTGTTGATAAGAAACTCGTTGACT--AAATGCGGCCCGGGTGCATTGCTCGACCCGCTG
     mojavensis  -------------------------------------------------------------TCGTTGATAAGCAACTGGTTGACT--AAATGCGGCCCGGGTGCATTGCTCGACCCGACG
      grimshawi  ---TCGAAAGGAGATTT-CGTTGATTTGATGTTTGCCAAA------AAAAAAACGC-------GTTGATAAGAAACTCGTTGAGT--AAATGTGGCCCGGGTGCATTGCTCGACCCACTG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATAAGCATGGAAAAATCCTTGATCTTGA-----------CTCTACGTTTCAACTCGCAAATGTATGCCGG---TAAACCCAACTTAAATG---TTATTATACGTATT--TTTGTCTAG--
       simulans  ATAAGCATGGCAAAATCCTTGATCTTGA-----------CTCTACGTTTCAACTCGCA-------------------------------------CTCGTACGTATT--TTTGTCTAG--
      sechellia  ATAAGCATGGCAAAATCCTTGATCTTGA-----------CTCTACGTTTCAACTCGCA-------------------------------------CTCGTACGTATT--TTTGTCTAG--
         yakuba  ATAAGCCTGGCAAAATCCTTGATCTTGA-----------CGCTGCGTTTCAACTCGCAAATTTATGCTGC---TGAA-CCAACTTAAATGTTTTTTTTTTACGTATT--TTTGTCTAA--
         erecta  ATAAGCATGGCAAAATCCTTGATCTTGA-----------CGCTGCGTTTCAACTCGCAAGTTTATGCTGC---TAAA-CCAACTTAAATG---TTTTTGTACGTATT--TTTGTCTAA--
      ananassae  ATAAGCCAAGCAAAATCCTTGATCTTGA-----------CGTTGCGTTTCAACTCGCAAATTTATGTTGCCCGTGGAAGCGGCTTAAATT-----TTTATAGGTATT--GT--TCTAAC-
  pseudoobscura  ATAAGCGCAGCAAAATCCTTGATCTTGA-----------CGTTGCGTTTCAACTGGCAAATTTATGTTGCCCACAGCAATCGAGTAAATT---ATTTGATAGGTATTTGTTCTTCTAGTG
     persimilis  ATAAGCGCAGCAAAATCCTTGATCTTGA-----------CGTTGCGTTTCAACTGGCAAATTTATGTTGCCCACAGCAATCGAGTAAATT---ATTTGATAGGTATTTGTTCTTCTAGTG
        virilis  ATAAGCGCCAGAAAATCCTTGATCTTGA------------GCTGCGTTTCTAGT----------------------AAGCCGCTTAAAAA---TCA------------------------
     mojavensis  ATAAGCAGCATCAAGTCCTTGATCTTGA------------GTTGCGTTTCTAGC------------------------------------------------------------------
      grimshawi  ATAAGCGTTTGAAAATCCTTGATCTTGAGCTGCTGCTGCTGCTGCGTTTCAAGC-------TGATGTTTACTCTATAAGCCGCTTAAAAA------AAGCGCGTTTT--TTTCTTAA---
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GACGTTTAACTTA---GCA------T---AGTGCAAAAATAAAA------CGACGAAAGATAAGACCCC----GCTCATAGCAAAAAGTT------GCGCGTCAA---GCCCAGCGGGAA
       simulans  GACGTTTAATTTA---GCA------T---AGTGCAAGAATAAAA------CAACGAAAGATAAGACCCC----GCTCATAATAAAAAGTT------GCGCGTCAA---GTCCAGTGGGAA
      sechellia  GACGTTTAATTTA---GCA------T---AGTGCAAGAATAAAA------CAACGAAAGATAAGACCCC----GCTCATAATAAAAAGTT------GCGCGTCAA---GTCCAGTGGGAA
         yakuba  AGCGTTTAGCTTA---GCA------T---AGTGCAAG----AAA------CAAAGATTGATAAGAGCCCGA--GTTCGTAGCGAAAAGTT------GCGCGTCGA---GCCCAGCGGGCA
         erecta  AGCGTTTAGCTTA---GCA------T---AGTGCAAGAATAAAA------CAAAGATTGATAAGAACTCGA--GTTCATAACAAAAAGTT------GCGCGTCGA---GCCCAGCGGGCA
      ananassae  AAAATCGAGCTTA---GCAGCGGCGC---AGTGCAAGTATTGAA------CA---GTTGATAAGAGTGAGAGCACTTGGAGCGAAAAGTTTCTGACACGCAACAATTGGCCCGGCGG---
  pseudoobscura  GGAATATGGCCCA---GCA------TCGAAGTGCAGGAAAGAAACGGGAGCAGAAATTGATAAGCAAGCAAGTGCCTTTAAACTAAACCT------GAGCTTCAG---AGCCGACGGGCG
     persimilis  GGAATATGGCTCA---GCA------TCGAAGTGCAGGAAAGAAACGGGAGCAGAAATTGATAAGCAAGCCAGTGCCTTTAAACTAAACCT------GAGCTTCAG---AGCCGACGGGCG
        virilis  -ATGTCTATGTCAGATGCA------A---GAAATAGCAATAAGG------CAGT---TGATAAGAGTCCCA--CCTCTAAAAAAAAAGTT------TCCCTGCAC---TGCCGGCGGG--
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  -TTTTCTGCCTCTATTAAA------A---AGAGAAGGAGCGAGG------CCGC-----------ATCTCA--AATGCAAGAAATA---------------GCAA---------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ACGTTTCTGAT----ATGA----TAAGATA-------ATCAGAGTC-GCAAAATATACATAATAATTTGCCAATTATACATCTGGGATTTACATATTTAAAGATAAAACAGCAAACTGAC
       simulans  ACGTTTCTGAT----ATAA----TAAGATA-------ATCAGCTTC-GAAAAATATTCAACACAATTTGCCAATTATACATCTGGGATTTACATATTTAGAGATAAAACAGCAAACTGAC
      sechellia  ACGTTTCTGAT----ATAA----TAAGATA-------ATCAGCTTC-GAAAAATATACAACACAATTTGCCAATTATACATCTGGGATTTACATATTTAGAGATAAAACAGCAAACTGAC
         yakuba  ACGTTTCTGAT----ATGA----TAAGAAA-------AACAGCATC-GCAAAAAATTCAAAATCATTTTCCAATTATACATCTGGGAGTTAAATTT----AAAT-AAACAGCAAAGTAAC
         erecta  ACGCTTCTGAT----ATGA----TAAT----------GACAGCATC-GCAAAATATACAAAATCAATTTTCAATTATACATCTGGGAGTTACATTTTTGGAGATAAAACAGCAAACTTAC
      ananassae  -CACCGCTAATCAGAATGA----TAAG--A-------GCCAGCTTC-AGAAAAAG---------GTTCGGCAATTGTACGCCTGGGCGTT------------------------------
  pseudoobscura  ACGCTATTTA-----ATGA----TAAGAAAAAGGAACGCCTGAACCAAAAACCCACAAAAAACGCGTGCCTAATTATACAACAGGGAGCCATCTGCATGCTGATAAAACAGTGAAAAGAC
     persimilis  ACGCTATTTA-----ATGA----TAAGAGAAAAGAACGCCTGAAAC-AAAACCCACAAAAAACGCGTGCCTAATTATACAACAGGGAGCCATCTGCATGCTGATAAAACAGTGAAAAGAC
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------CTGAT----ATGAGTTCTCAAAAA-------ATAA------ACAAAATATAAATAAAAGTT-----------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAT---GGTGGGTGGTGCGCATGAAAATTTGTTTTACAACT----------------TGACACATTTTCATGGTAAAAAGCAGGAAGCAG-CATTAGTGGAATGGTAATTATTTA-----
       simulans  AAT---GGTGGGTGGTGCGCATGAAAAATTGGTTTTCAACT----------------TGACAAATTTTCATGGTAAAAAGCAGAAAGCAG-CACTAGTGGGATAAGAAGTATTTAATACA
      sechellia  AAT---GGTGGGTGGTGCGCATGAAAAATTGGTTTTCAACT----------------TGACAAATTTTCATGGTAAAAAGCAGAAAGCAG-CACTAGTGGGATAAGAAGTATTTAATACA
         yakuba  AAT---GGTGGAGTGTGCACATCAAAAAATGTTTTACAAAT--ATTCAA---------AAAGGAACTCCACGTGAAAGGTAAAAAAGCAG-CATTAGTT--ATTGGAAATAGTAAAAACA
         erecta  AAT---GGTGGATGATGCGCATTAAAATACATTTTACAAATTATTTTAAAATTTTGCTAAAGAAATTTAAAGTAGAAGACAAATATTTAATCATTATTTGAATGGGAAATA---------
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  AGTCTCTGTTGGGAGTGCGTTGAAAAA------------------------------------------------------------------------------------TTTAATCC-
     persimilis  AGTCTCTGTTGGGAGTGCGTTGAAAAA------------------------------------------------------------------------------------TTTAATCC-
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBRRRRRRRRMMMMMMMMRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRR

                 
   melanogaster  ------------------------------ATTCAGGTTAATCAAGATACGCGTAAATGTTTTAAAGGTAAAGGTTTTCCTATTGCACCACACTCGC-AAAGT---------ATCCTAGC
       simulans  TAACACAGTTAGAAAAAAACAAATATCGCTATTCGGGTTAATCGAGATACGCGGAAATGC------------GGTTTTCCTATTGCACCACACACGC-CAAGT---------ATCCTAGC
      sechellia  TAACACAGTTAGAAAAAAACAAATATCGCTATTCGGGTTAATCGAGATACGCGGAAATGC------------GGTTTTCCTATTGCACCACACACGC-CAAGT---------ATCCTAGC
         yakuba  TAATAAAG----------------------------GTTAATCAAGATATGCGGAACTGC------------GGTTTTCCTATTGCACCACACACGC-AAAGT---------ATCCTAGC
         erecta  ------------------------------------GTTAATCAAGATATGCGGAACTGC------------GGTTTTCCTTTTGCACCACACACCTAAAAGT---------ATCCTAGC
      ananassae  ----------------------------------AGATTAATCTTGATCTGCGGAACTGC------------GGTTGGCACGTTGCGCCATAGGCTT-GGAAC---------ATCCTGGC
  pseudoobscura  ----------------------------------GGATTAATCT-GATCTGCGGAACTGC------------GGTTTACTTATTGCGCCACAAGATT-TAAAA---------ATCCTGGC
     persimilis  ----------------------------------GGATTAATCT-GATCTGCGGAACTGC------------GGCTTACTTATTGCGCCACAAGATT-TAAAA---------ATCCTGGC
        virilis  ---------------------------------------AATCAAAATCCGCGGAACTAT------------GGCT-GCTTATTGCGCCACAAATCT-G----------TAGATCCTGGC
     mojavensis  ----------------------------------------------------------------------------TGCTTATTGCGCCACAAATCT-GCAGATCCTGCCAGATCCTGGC
      grimshawi  ----------------------------------------------------------------------------TGCTTATTGCGCCACAAATCT-GTAGATCCTGGC--TTCCTGGC
        Summary  RRBBBBBBBRRRRRRRRRRRRRRRRBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GCCTTAT----------GTGGATCAATT-------TAAATCGGGATCC-TAAGTTAACTATAATCCAG--GCTTAATCACTGGATCAATAACTAAGTAGCATTTTCCGG--------GAT
       simulans  GCCTAAT----------GAGAATGAAGT-------CAAATCGGGATCC-TAAGTTAACTATAATCCCA--GCTTAATCACTGGATCAGTAGCTAAGTAGCATTTTCCGG--------GAT
      sechellia  GCCTAAT----------GAGAATGAAGT-------CAAATCGGGATCC-TAAGTTAACTATAATCCCA--GCTTAATCACTGGATCAGTAGCTAAGTAGCATTTTCCGG--------GAT
         yakuba  GCCTAAT----------GTGGATCAAGT-------CAAATCGGGCTCC-TAAGTTAACTATAATCCCA--GCTTAATCACTGGATCAGTAGCTAAGTAGCATTTTCCGG--------AAT
         erecta  GCCTAAT----------GTGGATCAAGT-------CAAATCGGGCTCC-TAAGTTAACTATAATCCCA--ACTTAATCACTGGATCAGTAGCTAAGTAGCATTTTCCGG--------AAT
      ananassae  GCTTGTA----------GTAGATCAAGA-------ATAATCGGGCTCCTTAAGTTAACTATAATCCAA--GTATGATCACTGGATCAGTGGCTAAGCAACATGTTCCGG--------GGT
  pseudoobscura  GC-TAATCTTAGTAGTAGTGAAGTAGAT-------GTAATCGGGCTCCTTTAGTTAACTATAATCCTT--GACTGATCACTGGATCAGTGGCTAAGCAACATTTTCCGG--------GAC
     persimilis  GC-TAATCTTAGTAGTAGTGAAGTAGAT-------GTAATCGGGCTCCTTTAGTTAACTATAATCCTT--GACTGATCACTGGATCAGTGGCTAAGCAACATTTTCCGG--------GAC
        virilis  GC-TAATCGCAGCAG--TCGGGTC-GATCGCAACGCTAATCGCACGCCTTAAGTTAACTATAATCCAATGCATGATCCACT-----------------------CGCCAGTGCTT-CGAG
     mojavensis  GC-TAATCGCAGCGC--T---------------CGCTAATCGCACGCCTTAAGTTAACTATAATCCAA--CATGATCCACT---TCA--CGATCGGCCGCTCGACGCGGATGCC------
      grimshawi  GC-TAATCACAGCAGA-TCAGCTCAGATCT---CGCTAATCGCACGCCTTAAGTTAACTATAATCCAA--GCTGATCCACT--------CGTTAAGCAATATGTTCCGGGCACTCGCGAC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  G-GAAA--T-ATGAAGTTACCTGCATATGCCTACCGATCCTGA--------------------------------AAACTGCTTTAACTTAA-------------------T-----CGA
       simulans  G-AAAA--T-ATGGAGTTACCTGAATATGTCTAGCGATCCTGA--------------------------------TAACTGCTTTAACTTAA-------------------T-----CGA
      sechellia  G-AAAA--T-ATGGAGTTACCTGAATATGTCTAGCGATCCTGA--------------------------------TAACTGCTTTAACTTAA-------------------T-----CGA
         yakuba  G-GAAA--T-ATGGAGCTACCTGCTTAAGTCTACCGATCTTGA--------------------------------CAACTGTTTTAACTTAA-------------------T-----CGT
         erecta  G-GAAA--T-ATGGAGCTACCTGCTTAAGTCTACCAATCATGA--------------------------------CAACTGCTTTAACTTAA-------------------T-----CGT
      ananassae  TCGAGA--C-ACCCA-CTACCTGTGCAGGTCAGCTACTCGGAC--------------------------------CAACTGGTTTAGCTTAAT-CCAGGGATTTAACTTTTT-----CGC
  pseudoobscura  C-GAAA--TGATCAATTTACCTGCCTTGGCCCACTGCCCACTG---------GTCCACTGATCATTTGAACAGTTTAACTGGTATAACTTAAT-CCCAGGATTAAACTTTTT-----CTT
     persimilis  C-GAAA--TGATCAATTTACCTGCCCTGGCCCACTGGCCACTGCAGTCGGCAGTCCACTGATCATTTGAACATTTTAACTGGTATAACTTAAT-CCCAGGATTAAACTTTTT-----CTT
        virilis  T-CGGA--T-ACCTGGGCAAGT----------GTTGGTCAACG-------------------------------CCAACTGTTTTTGCTTAAT-CCCGGGCTTTAACTTTTT-----GCA
     mojavensis  T-CGGA--T-ACCTGGACGTGT----------GT---TCCTGG-------------------------------CCAACTGTTTTTGCTTAATCCCCGGGCTTTAACTTTTT-----GCA
      grimshawi  T-CTTACCT-GCTTGCGCAGGTTCAACGGCTGAT---TCAACG-------------------------------CCAACTGTTTTTACTTAATCCGGGGGCTTTAATTTTTTTATTGGCA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CA----TGCATGATCATAAAA--A---GCAAT-TTGCTACAATTTA-------TATTTTTT------TGC-----------TTTTCCTTCTTT--T-----AAGCAT----CTGGGAT-C
       simulans  CA----TGCATGATCATAAAA--A---GCAAT-TTGCTACAATTTA-------TATTTTTT------TGC-----------TTTTACTTCTTT--T-----AAGCAG----CTGGGAT-C
      sechellia  CA----TGCATGATCATAAAA--A---GCAAT-TTGCTACAATTTA-------TATTTTTT------TGC-----------TTTTACTTCTTT--T-----AAGCAG----CTGGGAT-C
         yakuba  CA----TGCATGGTCATAAAA--A---GCAAT-TTGCTACAATTTA-------TATTTTCC----TATGC-----------TTTTACCTCTTT--A-----GAGCAG----ATGGGAC-C
         erecta  CA----TACATGATCATAAAT--T---GCAAT-TTGCTACAATTTA-------TATTTTCT----TATGC-----------TTTTACCTCTTT--A-----AAGCAG----ATGGGAC-C
      ananassae  CA----TGCCTGCTAATAAAA--A---GCAATAACGCTACAATTTC-------TTTTTACTCGGCCAGGC-----------TTTTACCTCATT--C-----CTGCAG----CTGTTTC-C
  pseudoobscura  CA----TGCCTGATAATAAAA--A---AAAAA-TTGGTACAATTCG-------TTTGTTTT-GCTCAGGC-----------TTTTACCTCTTT--T-----GAGCAG----CTGTCCC-T
     persimilis  CA----TGCCTGATAATAAAA--A---AAAAA-TTGGTACAATTCG-------TTTGTTTT-GCTCAGGC-----------TTTTACCTCTTT--T-----GAGCAG----CTGTCCC-T
        virilis  TG---TCGGATTATAATAAAA--ATGTGAATA-TTGCGACAATTAT-------TTTTTTTT------A-------------TTTTACCTCTTTACTCCGCGAAGCAG----CTGACTC-C
     mojavensis  CTCGCCCGGATTATAATAAAA--ATTTGAATA-TTGCGACAATTAT-------TTTTTGCT------GGCTCGGCAGACGCTTTTACCTCTTTACT-----ATGCAG----CTGACTCGC
      grimshawi  GA----TGGATTATAATAAACATATTTGAATA-TTGCCACAGTTTTTATATTGTTTTTTCT------AGTC----------TTTTACCTCTTT--TACGCCGTGCAGCTGACTGACTC-C
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -TGGATCAGAAAAG-------------------------AAAAA----GTGTAACGCCTACCTTCAGAAACGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
       simulans  -TGGATCAGAAAAG-------------------------AAAAA----GTGTAACGCCTACCTTCAGAAACGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
      sechellia  -TGGATCAGAAAAG-------------------------AAAAA----GTGTAACGCCTACCTTCAGAAACGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
         yakuba  -TGGATTAGGAAAG-------------------------AAAAA----ATGTTACGTCTACCTTCAGAAACGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
         erecta  -TGGATTAGGAAGG-------------------------AAAAA----ATGTTACGTCTACCTTCAGAAGCGGATTAAATTTTTT------CAGA-CAAATAATC-CAGCCTTAAGCATG
      ananassae  ACGGATTAGGGTAG-------------------------AAAAA--ACATGTTACGTCTACCTCCACAAACGGATTAAATTTTTT------GAAA-CATATAAGT-CAGTCTTAAGCATG
  pseudoobscura  -CGGATTACGAGAG-------------------------AGAAAAAACACTTTGAGTCTACCTCCAAAGACGGATTAAATTTTTT------CAAA-CAAATAAGT-CAGTCTTAAGCATG
     persimilis  -CGGATTACGAGAG-------------------------AGAAAAAACACATTGAGTCTACCTCCAGAGACGGATTAAATTTTTT------CAAA-CAAATAAGT-CAGTCTTAAGCATG
        virilis  -CGGATTAGTAGAGACGACTGCGCAGAGGGAACAGAGA-AAAAA---CACGTTGCGCCTACCTCGGAGGGCGGATTAAATTTTTT------CAAC-AAAATAAGT-CAGTCTTAAGCACG
     mojavensis  -CGGATTAGTCGAGCAGACAGCGAACGAAAAAAAGAAACGAAAA---CACGTTGCGCCTACCTCG--AGGCGGATTAAATTTTTTTGTTCGCAACAAAAATAAGTCCAGTGTTAAGCACG
      grimshawi  -CGGATTAGTGGAG--GAGTGCAAA--------------AAAAA---CACGTTGCGCCTACCTCG---GGCGGATTAAATTTTTT------CAGC-AAAATAAGT-CAGTGTTAAGCACG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GTGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCTGTTAATCTCCGGCTTAGAGCGCGACGCG--TTTTTTCGCGACT----CCGCC
       simulans  GCGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCTGTTAATCTCCGGCTTAGAGCGCGACGCG--TTTTTTCGCGACT----CCGCC
      sechellia  GCGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCTGTTAATCTCCGGCTTAGAGCGCGACGCG--TTTTTTCGCGACT----CCGCC
         yakuba  GTGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCGGTTAATCTCCGGCTTAGAGCGCGACGCG-TTTTTTTCGCGACT----CCTTC
         erecta  GTGATTA-AGCTTGATCCCCTACC----AAGGGGCGTAATATTGACGGATTTTCCT-TAAATCCCTCGCTTAATCTCCGGCTTAGAGCGCGACGCG-TTTTTTTCGCGACA----CCGTC
      ananassae  GCGATTA-AGCTTGATCCCCTGCG----AAGGGGCGTAATATTTACGGATTTTCCTCTAAATCCTTCGGCTAATCTCCGGCTTAGAGCGCGGCGCGATTTTTTTCGCGGCT----TGGCC
  pseudoobscura  GCGATTA-AGCTTGATCCCCTGC-----AATGGGCGTAATATTGATGGATTTTCCTTTAAATCCTTATCCTAATCTCCGGCTTAGAGAGCGGCGCGATTTTTTTCGCGGCT----CGGTC
     persimilis  GCGATTA-AGCTTGATCCCCTGC-----AATGGGCGTAATATTGATGGATTTTCCTTTAAATCCTTATCCTAATCTCCGGCTTAGAGAGCGGCGCGATTTTTTTCGCGGCT----CGGTC
        virilis  GCGATTAGAGCTTGATCCTCCGGG--GACATGGGCGTAATATTGATGGATTTTCCTCTAAATCCGTCAGCTAATCTCCGGCTTAGCGCGCGACGCGATTTTTTTCGCGACT----GCCA-
     mojavensis  GCGATTAGAGCTTGATCCTCAAGG--GCCGTGGGCGTAATATTGATGGATTTTCCTCTAAATCCGTCGGCTAATCTCCGGCTTAACGTGCATCGCGATTTTTTTCGCGACT----GCAAC
      grimshawi  GCGATTAGAGCTTGATCCTCCGCGCAGACATGGGCGTAATATTGATGGATTTTCCTCTAAATCCGTCGGCTAATCTCCGGCTTAGCGTGCGACGCGATTTTTTTCGCGACTCTCCGCGCA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBB

                 
   melanogaster  TGCATTG-----------TTTT-------------------------------TTTTTTCAGTTTCTTCAATTCGCAAGAAGGCA---------GGCCTATGGACCGAATGAGGATCATA
       simulans  TGCATTG------------TTT-------------------------------TTTTTTCAGTTTCTTCAATTCGCAAGAAGGCA---------GGTCTATGGACCGAATGAGGATCATA
      sechellia  TGCATTG-----------TTTT-------------------------------TTTTTTCAGTTTCTTCAATTCGCAAGAAGGCA---------GGTCTATGGACCGAATGAGGATCATA
         yakuba  TGCATTG----------------------------------------------TTTTTTCACTTTCTTCAATTCGCAAGAAGGCA---------GGCCTAAGAACCGAATGAGGATCATA
         erecta  TGCATTGTTT----TTTTTTTT-------------------------------TTTTTTCATTTTCTTCAATTCTCAAGAAGGCA---------GGCCCATGGACGGAATGAGGATCATA
      ananassae  TGCATTG----------TTTTT-------------------------------TTTGTTCGTTTTCTTCGATTCGCAAGAAAGCA---------GGCCTCTGGGCC-AATGAGGATCATA
  pseudoobscura  TGTTTTGTTTTTTCTTTTCTTT-------------------------------CCTTTTCCTTTTCTTCAATTCGCAAGAACGCA---------GGCCTTTGGGCC-AATGAGGATCATA
     persimilis  TGTTTTGTTTTTTCTTTTCTTT-------------------------------CCTTTTCCTTTTCTTCAATTCGCAAGAACGCA---------GGCCTTTGGGCC-AATGAGGATCATA
        virilis  --------------------GT-------------------------------TTTGTTGTGTTTCTTTTTTTCGCGAGAAGGCAACTCGCTCTGACTGACTGACCG-GCGAGGATCATA
     mojavensis  TATTTTG------------TGT-------------------------------TTTGTCTAGTTTTTTTTTTTCGCTAGAAGGCAACTCGGTCTG-TTGACTGACTGCGCGAGGATCATA
      grimshawi  CATTGTG------------TGTGTGTGTGCGGGTGTGTGTGTGTGTGGGTGTGTGTGTGCTATGTTTTTTTTTCGCTAGAAGGCAAATCGAGCTGACTGCTCTGCTGACTGAGGATCATA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATTATGGAATTCCTAAATAAACTAAGAAG--------------GGCAGTCGGCATA-GTAT------TGATCTACCTGTAA------------GCGTGGGT---------TCTATCTTTG
       simulans  ATTATGGAATTCCTAAATACACTAAGAAG--------------GGCAGTCGGCATA-GTAT------TTATCTACCTGTAA------------GCGTGGGT---------TCCGTCTTTG
      sechellia  ATTATGGAATTCCTAAATACACTAAGAAG--------------GGCAGTCGGCATA-GTAT------TTATCTACCTGTAA------------GCGTGGGT---------TCTGTCTTTG
         yakuba  ATTATGGAATTCCTAAATACACTAAGGAG--------------GGCAGTCGACATG-GCGT------TGATCTACCTGTAA------------GCGTGGGT---------TCCGTCTTTG
         erecta  ATTATGGAATTCCTAAATACACTAAGGAG--------------GGCAGTCGATAAG-GCAT------TGATCTACCTGTAA------------GCGTGGGT---------TCCGTCTTTG
      ananassae  ATTATGGAATTCCTAAATAAACGAGGAAG--------------GGCAGACGGCGAGCGCGTCGA--CTGACCTACCTGTAA------------GCGTGGGTAGGAAGGACTCTG-CTCTA
  pseudoobscura  ATTATGGAATTCCAAAATACACTGAGAAA--------------GGCAGACAGAGAGAGCACTGAAGCTCAGCTACCTGTAA------------GCGTGGGT---------ATCGTATCCT
     persimilis  ATTATGGAATTCCAAAATACACTGAGAAA--------------GGCAGACAGAGAGAGCACTGAAGCTCAGCTACCTGTAA------------GCGTGGGT---------ATCGTATCCT
        virilis  ATTATGGAATTCCTAAACA-----AGAGAGAGAGAGAGACGAGGACGAGCATGAAGTACAC-GAGCGTGTGCTACCTGTAA------------GCGTGGGT---------TACCTCTTTG
     mojavensis  ATTATGGAATTCCTAAACA-----AGAGA--------------GCCGAGCAGCGAGTGCGCTTAGCGTGTGCTACCTGTAAGCGTGGATGTGGGCGTGGGT---------TACCTCTTTG
      grimshawi  ATTATGGAATTCCTAAAGA-----AGAGA--------------AGCCGCCAGAAGTAGTGC-TGGCG-AAGCTACCTGTAA------------GCGTGGGT---------TACCTCTTTG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -CCCCTCGCATTCGAGACTCTCT-AG---------TCACAGGTAG----------------------------------------AC----CAGCCTTGAGTT---CGTC-GGCAATTAA
       simulans  -CCCCTTGAATCCGAGACTCTTT-AG---------TCCCAGGTAGT------CAGT---------------------------ATAC----CAGCCTTGAGTT---CGTC-GGCAATTAA
      sechellia  -CCCCTTGAATCCGAGACTCTTT-AG---------TCCCAGGTAGT------CAGT---------------------------ATAC----CAGCCTTGAGTT---CGTC-GGCAATTAA
         yakuba  -CCCCTTGAATTCGAGACTCTCT-GG---------TCACAGGTAGT------CAAT---------------------------ATTC----CAGCCTTGAGAT---CGTC-GGCAATTAA
         erecta  -CCCCTTAAATTCGAGACTCTCT-AG---------TCACAGGTAGT-----CCCGT---------------------------ATTC----CAGCCTTGAGCT---CGTC-GGCAATTAA
      ananassae  -CTCT----GTCCCAGGCTTGCC-GG------CTACCACAGGTAGC------CAGA-----------------------------AC----CAGCCTTGAGTT----GCC-GGCAATTAA
  pseudoobscura  -CT---------------TCGCC-TA---------TCACAGGTAAC------CAGACCAGACCGGACCAGACT----------AGAC----CAGCCTTGAGTT----GTT-GGCAATTAA
     persimilis  -CT---------------TCGCC-TA---------TCACAGGTAAC------CAGACCAGACCGGACCAGACTTGACCAGACCAGAC----CAGCCTTGAGTT----GTT-GGCAATTAA
        virilis  -CC-----------AGGTC-TAG-CGCTGACCAGTTGCCAGGTAGC---GCTCGGCCCT------------------------TGGC----CAGCCTTGAGGTCACCGTTTGGCAATTAA
     mojavensis  -CC-----------AGGTCATCG-CG----------GCCAGGTAGCCTGGCCTGGCTGC------------------------TTGCTGCTCGGCCTGGAGGTCAGCGTTTGGCAATTAA
      grimshawi  CCC-----------AGGTCGTAGTCGTAGACGAAGTTTCAGGTAGT------CGG-----------------------------AGC----CGGCCTGGAGGT---CGCTGGGCAATTAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GAAGTCAAATTTCTCTTAAAAA------------CAA---CAAAAAAT-GTCAAA-------GTAAAAACAATGCAAAAAATA-TGT-GTA-ACTGAACTAAATCCGGCTTAGGA-----
       simulans  GAAGTCAAATTTCTCTTAAAAA------------CAA---CAAAAAAT-GTCAAA-------GTAAAAACAATGCAAAAAATA-TGT-GTA-ACTGAACTAAATCCGGCTTAGGG-----
      sechellia  GAAGTCAAATTTCTCTTAAAAA------------CAA---CAAAAAAT-GTCAAA-------GTAAAAACAATGCAAAAAATA-TGT-GTA-ACTGAACTAAATCCGGCTTAGGG-----
         yakuba  GAAGTCAAATTTCACTTAAAAA------------CAA----AAAAAAT-GTCAAA-------GGAAAAACAATGCAAAAAATA-TGC-GTA-ACTGAACTAAATCCGGCTTAGGA-----
         erecta  GAAGTCAAATTTCACTTAAAAA------------CAA---CAAAAAAT-GTCAAA-------GGAAAAACAATGCAAAAAATA-TGC-GTA-ACTGAACTAAATCCGGCTTAGGA-----
      ananassae  GAAGTCAAATTTCACTTAAAAA------------CAAAA-CAAAAAATCGCCTAA-------CGAAAAACAATGCAAAAAATG-TCC-CTAGACTGAACTAAATCCGGCTTAGGAAAGTC
  pseudoobscura  GAAGTCAAATTTCGCTTAAAAA------------CCAAAGAAAAAAAG-ATCGCA-------GCAAAAACAAAGCAAAAAATGTTGC-AGA-GCTGAACTAAATCCGGATTAAGA---AT
     persimilis  GAAGTCAAATTTCGCTTAAAAA------------CCAAAGAAAAAAAG-ATCGCA-------GCAAAAACAAAGCAAAAAATGTTGC-AGA-GCTGAACTAAATCCGGATTAAGA---AT
        virilis  GAAGTCAATTTTCGGCCAAAAA------------AAAAG-ACAAAAAG-ACGGCGATCACTGGCAAAAACAATGCAAAAAATG-TGCTAAA-GCTGAACTAAATCCGGCTTAAGA---AT
     mojavensis  GAAGTCAATTTTCGACCAAAAAATAAAATAAAATAAAAG-ACAAAAAG-ATTGTG-----------AGACAATGCAAAAAATG-TGCTAAA-GCTGAACTAAATCCGGCTTAAGA---AT
      grimshawi  GAAGTCAATTTTAGCCAAGAAA------------AAAAT-ACAAAAAG-ACA-----------------------AAAAAATG-TGC-AAA-GCTGAACTAAATCCGGCTTAAGA---AT
        Summary  BBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -------------------------TTCTTGCGTCATAAACATGACTAGGGAGCCATTAAA-----------------------------------ATTTGATAATTTGCATGTCACTTG
       simulans  -------------------------ATCTTGCGTCATAAACATGACTAGGCAGCCAATAAA-----------------------------------ATTTGATCATTTGCATGTCACTTC
      sechellia  -------------------------ATCTTGCGTCATAAACATGACTAGGCAGCCAATAAA-----------------------------------ATTTGATCATTTGCATGTCACTTC
         yakuba  -------------------------TTCTTGCATCATAAACATGGCCAGGCAGCCTTTAAA-----------------------------------ATTTGATCATTTGCATGTCACTCT
         erecta  -------------------------TCCTTCCATAATAAACATGGCCAGCCAGTCTTTCAA-----------------------------------ATTTGATCGTTTGCATGTCACTCT
      ananassae  GATTG------------TCAGCGGGTCCTTGCATCATCAGCAAGGTCAGACAGCCGTCCAG-----------------------------------TTCTGATCATTTGCATGCAGC--A
  pseudoobscura  GGCTG------------TCCTAAGGTCTTTGCATCATAAACAAGGTCAGGATTCCTAGCGG-----------------------------------CATTGTGCATTTGCATATTACCAA
     persimilis  GGCTG------------TCCTAAGGTCCTTGCATCATAAACAAGGTCAGGATTCCTAGCGG-----------------------------------CATTGTGCATTTGCATATTACCAA
        virilis  GACAACGCCGGGCAATAGGCC--AGGTTTTGCGTCATAAACGTTGCCGTCACCCACTCTCACTCCCTCGCTCTCTTTCTCTCGCTCTCTCGCCCTTCTCTGCGCATTTGCAT--------
     mojavensis  G----------------GGCC--AAGTTTTGCGTCATAAA--------------------------------------------------------------------------------
      grimshawi  GACAAC-----------GGCCAAAGGACTTGCGTCATAAACTCTGCAGAGAGAGAGAGAAA---------------------------------TGCTCTTTGCATTTGCATGC------
        Summary  BBBBBBRRRRRRRRBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGCACCGTAAA--CGAAGCCAACAC----A---TCG------------------------GCTGAAA-------------------------------CCCAGCGTCATTTATGCTATGC
       simulans  TGCACCGTAAA--CGCAGCCGACAC----A---TCG------------------------CCTGAAA-------------------------------CTCAGCGTCATT-------AGC
      sechellia  TGCACCGTAAA--CGCAGCCGACAC----A---TCG------------------------CCTGAAA-------------------------------CTCAGCGTCATT-------AGC
         yakuba  TGCACCGTAAA--CGAAACCGCCAC----A---TAA------------------------GTTGAAA-------------------------------CTCAGCGTTATT-------AGC
         erecta  TGCACCGTAAA--CGAAGTCGCCAC----A---TCG------------------------GTTGAAA-------------------------------CTCAGCGGCTTT-------AGC
      ananassae  AGGATCGTAAA--CGAATTCGCCGC----GTCCTCG------------------------CCGCCGA-------------------------------GGCAGCCTGGCC-------GGC
  pseudoobscura  CGGATCGTAAA--CGAATTCGCCGCGAAAA---CAG------------------------CCTCACATATGTATGTACCGACCATACCAACAATACCAACCACCCTAGTC-------AGC
     persimilis  CGGATCGTAAA--CGAATTCGCCGCGAAAA---CAG------------------------CCTCACA----TATGTACCGACCATACCAACAATACCAACCACCCTAGTC-------AGC
        virilis  --GATCATAAAATCGAATTCGCCGC----A---GCG------------------------CCGAGAA-------------------------------TTC--TCTCCTT-------AGT
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  --GATCATAAAAATAAATTCGCCGC----A---GAGAGCGACAGAGAGCGAGTGAGAGTTCTAAGGT-------------------------------CTC--TCTCCTT-------CTC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TATCT-----CACTCTTTTGCATA------------------ATTTTTT---TAA----ATTATTGACTTGTCTTTTTTAC-GAATGCAA-AGG------------------AAGTA---
       simulans  CATCT-----CACTCTTTCGCATA------------------ACTTTTT---AAA----ATTATTGACTTGTCTTTTTTAC-GAATGCAA-AGG------------------AAGTC---
      sechellia  CATCT-----CACTCTTTCGCATA------------------ACTTTTT---AAA----ATTATTGACTTGTCTTTTTTAC-GAATGCAA-AGG------------------AAGTC---
         yakuba  TATCT-----CACTCTTTCGCACC------------------ACTTTTT---TAA----AATTTTGACTTGTCTTTTTTAC-GAATGCAA-AGGAAAGAATTTTTTACAAGGAAGTA---
         erecta  TATCT-----CACTCCTTCGCACA------------------CCTTTTT---TAA----ATAATTGACTTGTCTTTTTTAC-GAATGCAA-AGA---------TGTAC----AAGTA---
      ananassae  --TCT-----CCTTTTTTCCCACACTTTTTATGCCGCCCTTGACTTTTT---TAA---TATGGGTGGTTTGACTTTTTTACTGGACATCG-CCG------------------ACGTCTAG
  pseudoobscura  TGCCT-----CGTCCTTTCCAACAGTTTATAGTCTGGCCTTGACTTTTTACGAAA----GTGAGCGGTTTGACTTTTTTACCGTCTGTTG-ATG------------------A-------
     persimilis  TGCCT-----CGTCCTTTCCAACAGTTTATAGTCTGGCCTTGACTTTTTACGAAA----GTGCTCGGTTTGACTTTTTTACCGTCTGTTG-ATG------------------A-------
        virilis  TTTTT-----CTTACCTTT------------------------TTTATT---TGT----GTCCTTGACTG---TTTTTAAT-GTGCGCGGTTTG------------------A-------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  TCTCTGCAGGCTCGCTCTC---TG------------------ATTTATT---TGTATTCGTCCTTGACTTG-CTGCCTAAT-GAACGCGGTTTG------------------A-------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBB

                 
   melanogaster  CTTGTGTACTTCCGTTTTTCA--------AAGTCCGATTTTATTATCT-----------------ACCTGCAATTTATAATGACAACCAAG-TTTTTAA---------------------
       simulans  CTTGTGTACTTCCGTTTTTTA--------AAGTCCGATTTTATTATCT-----------------ACCTGTAATCGAGAATGACAAACAAGTTTTTTAA---------------------
      sechellia  CTTGTGTACTTCCGTTTTTTA--------AAGTCCGATTTTATTATCT-----------------ACCTGTAATCGATAATGACAAACAAGTTTTTTAA---------------------
         yakuba  CTTGTGTACTTCCGTTTTTTA--------ATGGCCAATTTTATTATTAGACTTTTT---------ACCTGCTATTTATTATGGCTAACAAGTTTTTTAA---------------------
         erecta  CTTGTGTACTTCCGTTTTTTA--------ACGTCCGATTTTATTATTAGACACTAGTCAGGTAAAAACTGTGATTTATTATGGCTAAGAAGTTTTTTAA---------------------
      ananassae  CAGGAGTACTTCCGTTTTTTACATTTTTTATGGCGGATCTGGCTACCTG----------------ACAGTTTATGGACGTTGTCC-----GTTTTTTAA---------------------
  pseudoobscura  CTTG----CTTCCGCACTTTA--------AAGTT---TTTTATGATTAGTCCT------------ACCTGGGGTTTATGACTATTTAGA-GTTTTTTAA---------------------
     persimilis  CTTG----CTTCCGCACTTTA--------AAGTT---TTTTATGATTAGTCCT------------ACCTGGGGTTTATGACTATTTAGA-GTTTTTTAA---------------------
        virilis  CTTTTTT-GCCCAGTTTTTTA--------CGGTTGTCGTTTCT----------------------TCCTTCC------------------GTTTTTTAG---------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  CTTTTTTGGTCCCGTTTTTTA--------CGAGTGTCGTTTTTGTTTTAAGCG------------CACTTCC------------------GTTTTTTAGACATGACTTTTTTTTTTGACC
        Summary  BBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----------CAT-TCCAAAACGTGGTT-TTTTG-AGTTCAATAAGCTTCA--------------------TTTTTTAAAGGCT------------------------------CTTTTC
       simulans  ----------CAT-TGCCAAACTTCGTTGTTTTGTAGTTCAATAAGCTTCA--------------------TTTTTTAAGCGCTCTTTAAAATCATCCATTTTATGAATATTTACTTTTC
      sechellia  ----------CAT-TGCCAAACTTCGTTGTTTTGTAGTTCAATAAGCTTCA--------------------TTTTTTAAGCGCTCTTTAAAATCATCCATTTTATGGATATTTACTTTTC
         yakuba  ----------CTT-TCCGAATCATGGTTGTTTTAAAGGTCAATAATCAACATCTAGAATATAA----ACATTTTTGTAAACGCTCTTTCAAA-------------AAATATTAACTACTC
         erecta  ----------CTT-TCCGCACCCTGGTTCTCATATCGTTCAATAATTATCACGTAGAATAGTA----AACGCTTTGTAAAGGCTCTTTTAAATCATTTATTTTAGGACTATTTACTTCTC
      ananassae  ----------C---------------TGGGATAGTACTTCGAAGCCCTTCG----------TA----AATATTTTTGAA--------TGAAAGCCTCC-------GCATATTAG---TAC
  pseudoobscura  ----------CCG-GCCAAACTGGAAGAGTTTT---------------------------------------------------------------------------------------
     persimilis  ----------CCG-GCCAAACTGGAAGAGTTTT----------AGGTTCCGTGAAAAATGTAAC-GCAGTCTTCTTGAA--------TGGAA----------------------CGAACC
        virilis  ----------CCGAGTTTTAGTTTCGTTTTTTT------------------------ATGATACTACCTGGTTTTACAATTGCGCT--------------------------------TT
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  AGGTTGTTACCTGATTTTATGATTGGCTGTTTT------------------------GT--TGCTTTGCTGTTTTTTAATGAGTCT----------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBBBBMMMMMMMMBBBBBBBBRRRRRRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GAACCACATTAACATTTGCGG-TTACGTTTTTGTAGAAATTTTCCATAGCTGCATAAAGGTACAAGT-------TTCATTTATTTGATGGGAAAATG-AAT---TAGAGACCAGCACGAT
       simulans  AAACCACATTAACGTTTGCTGTTTACGTTT---------TTTTTCATATCTGCAAAAAGCTACAAGT-------ATAATTTATTTGATAGAAAAAGG-AAT---TTGAGACCAGACCAAT
      sechellia  AAACCACATTAACGTTTGCGGTTTACGTTG---------TTTTTCATATCTGCAAAAAGGTACAAGT-------ATAATTTATTTGATTGAAAAAGG-AAT---TTGAGACCAGACCAAT
         yakuba  AGACCATATCGACGTATAAAGTTAACGTTTAGGCAGAAATTTTTTA-----GCA-AAAGGTATAAGT-------CTTATTTATTTTATAGAAAAAAA-------TAGACACCAGAAGAAT
         erecta  AGACC-------------ATGTAAACGTTTA----------------------------------------------ATTTATTTTATAGAAAAAAAGGAT---TAGACACCAGACAAAT
      ananassae  GAGTCACACTAATAGTTTTTATTAAAATTAGTCCGGGTATAGCCCATAGATCCACAAA--------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  GAACCGAATCGA-------------------------------------------------------------------------------AAAACG-AAT---TCGAAATTCGGAAAGG
        virilis  TTACTGGGCCAGTTTTTTTTATTTTTTTTTTCGTAAAA--------------------GAGTCAAGTGAGGTTAGTGAACTATTTGA----AAACTG-AATGACTAGCGATTGGCTCGAT
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBRRRRRRRRBBBBBBBBBBBBBBBBRRRRRRRRMMMMMMMMBBBBBRRRRRRRRRRRRRRRRBBBBBBBBBBMMMMMMMMBRRRRRRRRBBBBBMMMMMMMMBBBBBRRRRRRRR

                 
   melanogaster  CTTTAAC-----AGAAACAAAAAGGCGTGGATATTGTTATATGTACAAAAACAACCATGGCATA------TACGTATGTATTGTATATCCTAATTCGGCCTTCC-TCTTATTTAATCACT
       simulans  CTTAAAC-----AGAAACAAGAAAGCGTGGATATTGTTATATGTACAAATACAACCATGGCACA------TACATA-----TGTATATCCTAATCCAGCCTTCC-TCTTATTTAAGCAAT
      sechellia  CTTAAAC-----AGAAACAAGAAAGCGTGGATATTGTTATATGTACAAATACAACCATGGCACA------TACATA-----TGTATATCCTAATCCAGCCTTCC-CCTTATTTAAGCAAT
         yakuba  ATTTGAC-----AAGGACAAGTAGGCGTGG--------ATAT----AAGTTCAACCGAGAT-----------TATA-----CATATATCCCAATTCCACCTTTTCTCTTATTTAAGCAAT
         erecta  GTTAGAC-----AGGGACAACTAGGCGTGGATATTATTATAT----AAGTACAACCATGACATA------TATGTA-----CATATACCCTAATCCAACTTTTT----------------
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ACTTCACATTTAAGGAATGAAAGTAGATAATTGTTTTTAAAAGTATAAACTTAGCCTTACCAGACGTATCCACTTA-----CATATGTACAAGCATACATATTT-ACATACTAGTATACT
        virilis  ATATAGA-----GGGAAT---------TGTATGTTTGTGTGTGTGTGCGCACAGCTGT------------------------------------------------------TAACAAAT
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  MMMMMMMMBRRRRRRRRRRRRRRRRBBBBBMMMMMMMMBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMMMMMMMMMMMM

                 
   melanogaster  TGCA-----ATAATTTTCAACTATACAGATCAGCAATCAAAGTTC---TTGATCCAATCGCTATAGTAACCA----GATGCGCAAGCTGATA---ATTTATTGAAAACTTTTTTCTTAGG
       simulans  TGCA-----ATAATTTTCATCATTGCAGATCAGCAATCAAAGTTC---TTGATCCAATCACTATGGTAACCA----GATGCGCAAGCTGCTA---ATTTATTTAAAACATTTTTCTTAGG
      sechellia  TGCA-----ATAATTTTCATCATTGCAGGTCAGCAATCAAAGTTC---TTGATCCAATCACTATGGTAACCA----GATGCGCAAGCTGCTA---ATTTATTCAAAACATTTTTCTTAGG
         yakuba  TGTA-----AAATTATACTCATTACCGGCAGGGCAATCCAAGTTC---TTGATTCTATCATTATGATTACCA----GATGCGCAAGCTGCTA---ATTCATTCAAATTATATTTCTTTGG
         erecta  -----------------------------------ATCCAAGTTC---TTGA--CTATCATTATGATTACCA----GATACGAAAGCTGCTT---ATTCATGCAAA-CATTTTTCTTAG-
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  AGTACACTCGACTCATTCTCTTTGTCGGGAGAGAGAAAAAAACCT---TCCAGCAAGCTCTTATACT-------------CGCAGTCAGTTA---AGTTATTGAAAGATTTTTTGTTAGT
        virilis  TATG-----TTTAGTGTCGCTTCATCTGATTGGCATTTAAAATTCAATTTAGAATCTCCTTTAGAGTTACAAGTATGATTATTAAACAATAATATATTGTTTAAAAAAGTTTTTCTGAAA
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  MMBBBRRRRRRRRMMMMMMMMMMMMMMMMBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBBBMMMMMMMMRRRRRR

                 
   melanogaster  ATTCTTCCAT------ATTAAGCATTTCCC---TTGCTGTGACCTCGATTCAAAA---GAAAGCACTGATTTAATGCAGGTAATCGTCA---AAAAAATAATGTTTGATATTTTTTTGAT
       simulans  AGTCTTCCAC------ATTAACCCTTACCC---TTGCTGAGACTCGGATTCAAAA----AAAGCATTGGTTTAATACATGTAGTCGTC-----------ATTGTTTGATATTTTTCGGAT
      sechellia  AGTCTTCCAC------ATTAACCCTTACCC---TTGCTGAGACCCGGATTCAAAA----AAAGCATTGGTTTAATACATGTAGTCGTC-----------ATTGTTTGATATTTTTCGCAT
         yakuba  CATCTTCTACATA--TATTAACCCTTACCC---TTGCTGTGACCCCGATTTAAAA----AAAGCCCTGTGTTAATGGATGTTATCGTCCT--AAAAATTG----TTGAGATTTTTCAGAT
         erecta  -----------------------------------ACTGTGACCCCGA----------------------TTGATCCATGTTCTCGTCAT--AAAAAATATTATTTGATATTTTTCAGAT
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  TTTTTT-----------------------------------------------------------------------------------TCGAAAAGGTATTCTGCGATATTTTCAATCC
        virilis  AATGTT-----TAATTATAAAACGTTATTTATGTTATTTTAACAAATATTTATAACATTTAAATATTCTCTATATATAAATA--------------TTAAATGTTCAATATTCTCTTGTC
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  RRMMMMMMMMBBBBRRRRRRRRMMMMMMMMBBBBBBBBBBBBBBBBBRRRRRRRRBBBRRRRRRRRBBMMMMMMMMBBBBBBBBBBBRRRRRRRRBBBMMMMMMMMBMMMMMMMMBBBBB

                 
   melanogaster  CGCGTGCCATGGGTAACTCAAT--------AAAA-----TGTTTGTGATTTAT-------AT----------ATGTAAACATCAAGTATATAG----------------AAAACTGAGGT
       simulans  CGCGTGACATCGGTAACTGAAT--------AAAT-----TGTTCGTGATTTAT-------AT----------ATGTAAACATAAAATATATAG----------------AAAACTGAGGT
      sechellia  CGCGTGACATCGGTAACTGAAT--------AAAT-----TGTTCGTGATTTAT-------AT----------ATGTAAACATAAAATATATAG----------------AAAACTGAGGT
         yakuba  CGT-TACCGAGGGTAACGACATTATAACGACAAAATATGTGTTCTTTATATAC-------AT----------ATGTAAACATAAAATATCTAAGAAACACTTCAACGGCAAAACTGAGTT
         erecta  CGT-------GTGTAACGACAT--------AAAAGTATATATTTGTTTTAAAC-------AT-----AAGTAAGGTAAACATAAAATATCTCAGAAACACTTTAACGGCAGAGCTGAGTT
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  TTTTAGCCAGATGCCAGACAATCTTGTG--CAGA-----CTTCTGCCAAATCTCCGACTAAT----------CTGCGATTATTAGGTCCTTGA----------------ACGAACGGGTA
        virilis  CAAATTTTTTAATTCATTCGTTTATT----CAAT-----T-TACGTAATTAAATTG----ATTCCCCTATTGATTTATCTACTAACTATATTT----------------TCAAATTAGGT
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CGGGTATACTTTTTGAGTTCGTTCGAAAGGGGTTTTCCATTGCACTCAATAT-TATATTCAAATAGATCTTA-------------GACGTTCCATAAC-AGCTTAAGG-TGCGCGGATTA
       simulans  CGAGTATTCTTTTTGAGTTCGTTCGAAAGGGG-----------------------TATTTAAATAGATCTCA-------------GTCGTTCCATGAC-AGCTTAAGGTTGCGCGGATTA
      sechellia  CGAGTATACTTTTTGAGTTCGTTCGAAAGGGG-----------------------TATTTAAATAGATCTCA-------------GTCGTTCCATAAC-AGCTTAAGGTTGCGCGGATTA
         yakuba  TGAG--TACTTCCTGAGTTCGTTCAAAAGGGGTTTTCCATCGCATTCTGTAT-TATATTTAAATAGATCTAA-------------GCCGTTCCATGGC-AGCTTAAGGTTGCGTGGATTA
         erecta  CAAGTATACTTCTTAAGCTCGTTCGAAAGGGGTTTTCCATCGCATTCAATAT-TATATTTAAATAAATCTAA-------------GCCGTTCCATAGC-AGCTTAAGGTTGCGTGGATTA
      ananassae  ---------------------TCCGAAAGGGGTTTCCCATCCCATTAAAAAG-TAGATTTAAACAG--TTAC-------------GCATTTCCA---------------TCCTTGGCTTA
  pseudoobscura  ---------------------------AAGGAGTTTCCATCACATTAAAAATGGGGATTTGAGTAATTTTAAATTCAAACAATA-AATGATTAGTGGCTAGTCGAGGATTGCGCAGTTTA
     persimilis  TGGCTAAACCC----AATCCCTTCAA---GGAGTTTCCATCACATTAAAAATGGGGATTTGAGTAATTTTAAATTCAAACAATATAATGATTAGTGGCTAGTCGAGGATTGCGCAGTTTA
        virilis  CAGAGTTACTTTTTAAATCAG---------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGACTGACG---ATTACCGACTGGGTAAAGACAAG-------ACAGAATT-------CAATCCT-------------------------------GTTCTTGATACTTTGTCAA------
       simulans  GGACCAACG---ATTACCGACTGGATAAAGACAAGTTCGAGAACAGAATT-------CAATCCT-------------------------------GTTCTCGATACTTTGTGAA------
      sechellia  GAACCAAAG---ATTACCGACTGGATAAAGACAAGTTCGAGCACAGAATT-------CAATCCT-------------------------------GTTCTCGATACTTTGTGAA------
         yakuba  GGACAAACG---ATTATCGACTGGTTAAAGACAA--ACGGGAACAAAATT-------CAATCCT-------------------------------GTTCTTGATACTTTGTCAA------
         erecta  GGACTGACG---ATTACCGACTGGTTAAAGACAAGTACGTGAACAAAATT-------CAATCCT-------------------------------GTTCTCGATACTTTGTCAA------
      ananassae  GGAAAAGCG---ATTATCGCGCGGCTAATGATGAGTCCGCGGGAAAGCTTCTGGTCGCAGCTCTAAGCGGAAGGATTACGGAAGAGATCGCGTGGGTGCTGTGGAATTTCTCAA------
  pseudoobscura  CATCCGCGGCTTATTACGGTGTGGCCAAAG---AGTGCAGGGA-AGGATT-------GAGTCCA-------------------------------AGTCTGGACTGTAAGTATT------
     persimilis  CATCCGCGGCTTATTACGGTGTGGCCAAAG---AGTGCAGGGA-AGGATT-------CAGTCCA-------------------------------AGTCTGGACTGTAAGTATT------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ---------------------------------------------------------------T-------------------------------ATTGTCGGCACATTATCAGCTCATC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --TGGATTTAT-ACTAAAT----C--------------ATAGGCTCATAA----TAC----------CTTCTTACGTTT-----------------------------TGC
       simulans  --TGGATTTAT-ACTAAAT----C--------------AGAGGTTCATAG----TAC----------CTTCTTATGTTT-----------------------------TGC
      sechellia  --TGGATTTAT-ACTAAAT----C--------------AGAGGTTCATAA----TAC----------CTTCTTATGTTT-----------------------------TGC
         yakuba  --CGGATTAAA-TTTAAAT----C--------------AGAGGCTCATAA----TAC----------CTTATTACGTAC-----------------------------TGC
         erecta  --CGGATTAAT-ATTAAAT----C--------------AGAGGCTCTTTA----TAC----------GTTTTTACGTAC-----------------------------TTC
      ananassae  --AGGCTTACG-GTTAAATGCAAC--------------AGAATCGCCTAA----TGCACTTTAAGTACCTTTCATCTCT-----------------------------ATT
  pseudoobscura  --AGGATTAGCAACCAAAT----CGCATGATTAAGAATGGAAGCTCACAGCGGTTCC----------ATTCTGAAGTATTCAAGAAACACACAAGATCAAGAGTGCGATGG
     persimilis  --GGGATTAGCAACCAAAT----CGCATGATTAAGAATGGAAGCTCACAGCGGTTCC----------ATTCTGAAGTATTCAAGAAACACACAAGATCAAGAGTGCGATGG
        virilis  ---------------------------------------------------------------------------------------------------------------
     mojavensis  ---------------------------------------------------------------------------------------------------------------
      grimshawi  GCTCGATTGAC-TATAAAT----C--------------AAAAAATCAAAA----ATC----------CCCTTCTCAGCT-----------------------------CGT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB


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