crm
                 
   melanogaster  TTGATTTGGCCACCCGTGGCGGCT----------CTGTCACAGATGCC---------TCAATTTGCATCTATCGAATGGTTTACATGGCTCTAAAAAG-----GTACCTCGATGGGTTGG
       simulans  TTGATTTGGCCACCCGTGGCGGCT----------CTGTCACAGATGCC---------TCAATTTGCATCTATCAAATGGTTTACATGGCTCTAAAAAG-----GTCCCTCGATGGGTCG-
      sechellia  TTGATTTGGCCACCCGTGGCGGCT----------CTGTCACAGATGCC---------TCAATTTGCATCTATCAAATGGTTTACATGGCTCTAAAAAG-----GTCCCTCGATGGGTCG-
         yakuba  TTGATTTGGCCACCCCTGGCGGCT----------CAGTCACAGATGCC---------TCAATTTGCATCTATCAAATGGTTTACATGGCTCTAAGGAAGCCATGTTCCTCGATGAGTCG-
         erecta  TTGATTTGGCCACCCGTGGCGACT----------CCGTCGCAGATGCC---------TCAATTTGCATCTATCAAATGGTTTACATGGCTCTAAAAAAG----GCCCCTCCATGGGTC--
      ananassae  TTGATTT-----------------------------------------------------------------------------------------------------------------
  pseudoobscura  TTGATT-GGCCACCC---------------------------------------------------------------------------------------------------------
     persimilis  TTGATT-GGCCACCC---------------------------------------------------------------------------------------------------------
        virilis  TCGATT------------GCGGTTCCGACTAGCCATATCGAGATTACCACGGAGGAC---------------------------------------------------------------
     mojavensis  TCGATT------------GCGGTTCTGCTTGGCCATATCACAAATG--------------------------------------------------------------------------
      grimshawi  TCAATT------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TCACAATG-TGGTGGCCTCTCAACATTGCAAGGCTCTTACTTGTGAATTATTAAGT--TATTAACTGCTGCGATGTAAGTCATGGCAGTTTCTGTTTTCTTTATAGGATATATATAGGAA
       simulans  --CCAATGTTGGTGGCTTCTCAACATTGCGAGGCTCTTACTTGTGAATTATTAAAT----GTAACTACAGCGATATAAGTCATGGCAGTTTCTGTTTTCTTTATAGGAGGTA--------
      sechellia  --CCAATG-TGGTAACTTCTCAACATTGCAAGGCTCTTACTTGTGAATTATTAAAT----GTAACTACAGCGATATAAGTCATGGCAGTTTCTGTTTTCTTTATAGGAGGTA--------
         yakuba  ---------CCGTGGTGCCTTGGCATTGCAATGCGCTTGCTGGTGAATTATTAAGTGTAAGTAACTACTGCGATATAAGTCATGGCCGTAGCTCTTCGGCACCTGGCA------------
         erecta  ----------------GCCTTAACATTGCAATGCTCTTACTTGTGAATTATTAAGT----GTAACTACTGCGATATAACTCATGGCAGTTTCGGTTCGGT--------------------
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------ATATAAAAAATTCCAGTTAATTTCTTCTATATAATGTATA--------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGATTAAAGGAGGCATGTACAAT-------AATATGAGTATGATTTA-----GCTCAAATTCCAAATAT------GATAAAAGTACA-AAGCATACGATAATATAATCAAATTACGCTGA
       simulans  -ACTTAA------CATG-----T-------AATTTGAATACCAACGA-----GCTCAAGTTGCAAATAT------GAATAAAGTATG-TATATTAC----ACATGATCAAATTTAGCTGG
      sechellia  -ACTTAA------CATG-----T-------AATATGAATACCAACGA-----GCTCAAGTTGCAAAT-----------------------------------ATGATCAAATTTAGCTGA
         yakuba  -AATTGG------CATATATTAT-------ATAATGAATATCAAGGA-----GCCCGAATTGCAAATAT------GATCAAAGACCATTATTGTACCATCTTACAATTAAATGTTGTTGA
         erecta  --TTTAG------GATGCAACAT-------AGTATGAGTACCAACGA-----GCCCAAATTGCAAATACTCGTAGGATCAAAG-----TATTACAC------ATGATGGTATATGATT--
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  -TATATA------CATAAATATTTTACTGT------GATGCAAGTGATATATACTTAAGATACAA----------TATAAAAGCGCATCCTTTCAT----------TCCTACTA------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CAATCACGATAATG--TTC-------------TTGTAGTAGTATTTGTG-------TAAT------------ATTTATGTTTTTTTAAGATAAGAAACGGTAATAAAATCCA--------
       simulans  CAATCATGATAATG--TTCCTG-GTTAACTCGTTGTATTATCCTTTCTCAAAA---TAAA------AATCAGATATGTGCAACAACAAGTTAAGGAATGGTAATAAAATCAAATTAATTA
      sechellia  CAATCATGATAATG--TTCCTG-GTTATCACGTTGTAATATCCTTTCTCAAAAGCTTAAATGGTTTTATCAGATATGTATAACAAAAAGTTAAGAAATGGTAATAAAATCAAATTAGTTA
         yakuba  C----------ATGGACTCCTT------GACTCCATGTTATCTTTTTGCATGTATCCAAA---------CTGCGGTGCATTTTTGCAAAG-AAGAAAGGCTAATGAGATCAAATTAATTG
         erecta  -----------ATG--CTCCTTTATCAAGACGGCTTGCTATCCTTTTGCAATTATTCCAG---------CTG----ATAATGTTGC----------AGGGTAATAACATCAAATGAATTA
      ananassae  ---TCTAGCTAGTG--TTTGTG-------------TATTATAATTT--------------------------ATATATGTTTTAATAATT-AAATTATCATAATTAAGGCTAATAA--TA
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------TAATAGTGATATGATATATGGT----------TATC------------CATCATACTACTTTCAATGTGTAATCCATAATGAAATCCATCAA--TA
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRR

                 
   melanogaster  ----------CGTAAGTGT-AAAAAATG--GATGCCCTAATCT-------ATGCCATGATGTG----TTCTACTTT-CGAGATTTCGCCTCTG-----------------------CCCT
       simulans  GAATTATCTTCGTGAGTCTAAAAAAATG--GAAA---TAATCT-------ATGCCAAGATGTG----TCCTACTTT--GAGATTTCGCCCCTG-----------------------CCCT
      sechellia  GAATTATCTTTGTGAGTGTAAAAAAATG--GATGGCCTAATCT-------ATGCCATGATGTG----TCCTACTTT--GAGATTTCGCCCCTG-----------------------TCCT
         yakuba  GAATAATCTACGAAAAG-T-AAAAAATGGAGATGCCCTAATCT-------ATCCCATGATGCCA---ATCTGCTTT--------------CTG-----------------------CCCT
         erecta  GAATTATCTACGTCAGGTT-AAAAAATG--GATGCCCTAATCT-------ATGCCCTGATCTTCTGTTTCTGCTTC--GAGATTCCGCCACTG-----------------------CCCT
      ananassae  AAACTATTT-----------GAAAAACA----------AATTT-------AT---------------TAATAGTCC--------------TTG-----------------------CTCT
  pseudoobscura  --------------------------------------------------------------------------------CCTTCGATGTCTG-----------------------GCCA
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  TGCTTATTTATGCAAATTTCCAGCCATA--GATACAATAGTATCTCAAAGATACTGAGTAGCT----TTTTA-TTCACGCACTTCTGCCGCTGCCCAGGTACATCTCTCTAACTCTCCCT
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  RRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --CATTGATGGTT---TCCCGGGGCTACTTGGCCCAAAAATCCCGGCCGTCCAAAAAGA------CGATCCT-------TAAAAAAGAAACCGC-TAATCATTGG----G-CCGCACAAA
       simulans  --CATTGATGGTT---TCCCGGGGCTACTTGGCCCAAAAATCCCGGCCGTCCAAAAAGA------TGATCCT-------TAAAAAAGAAACCGC-TAATCATTGG----G-CCGCACAAA
      sechellia  --CATTGATGGTT---TCCCGGGGCTACTTGGCTCAAAAATCCCGGCCGTCCAAAAAGA------TGATCCT-------TAAAAAAGAAACCGC-TAATCATTGG----G-CCGCACAAA
         yakuba  --CATTGATGGTT---TCCC-GGGCTACTTGGCCCAAAAATCCCGGCCGGCCAAAAAGA------CGATCC--------TAAAAAAGAAACCGC-TAATCATTGG----G-CAGCACAAA
         erecta  --CATTGATGGTT---TGCC-GGGGTACTTGGCCCAAAAGTCCCTGCCGTCCAAAAAGA------CGATCC--------TAAAAAAGAAACCGC-TAATCATCGG----G-CAGCACAAA
      ananassae  --TCTTAG----T---TCCC------ACT----CCAATATCCTTCGCCGCCCGACAAAC------CATTTTTTTTTTTGTAAAAAAGAAACCGC-TAATCATTGA----G-CCTCACAAT
  pseudoobscura  TCCATTGATGATTGTACTCC-AGTTTCCAATTCCCTAAAACCAGAGACATGCCATAAGA---------TCC--------TAAAAAAGAAACCGC-TAATCATTTC----GCCCACACAAA
     persimilis  --CATTGATGATTGTACTCC-AGTTTCCAATTCCCTAAAACCAGAGACATGCCATAAGA---------TCC--------TAAAAAAGAAACCGC-TAATCATTTC----GCCCACACAAA
        virilis  ---------------------------------------------------------------------CCC-------TAAAAAAGAAACCGCATGATTATGCG----C-CCACACAAT
     mojavensis  --CGTTCCCATTT---CGCC-TACTTATCCGGCCATTCAGCAACTGCCGTCCACTGCCAGCTTCCCGATCCC-------TAAAAAAGAAACCGCATGATTATGCG----C-CCGCACAAT
      grimshawi  --------------------------------------------------------------------------------AAAAAAGAAACCAC-TAATTATGCGACCAA-CCACACAAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GAGCGGACAATCGCTC-------ACCTAATTATTTGGCCCGATTGTGAGGAGC--GGACAGTCGGCTCGTGGACGCTTTTTGTGGCC--------TCTTTTTG-TT-------------T
       simulans  GAGCGGACAATCGCTC-------ACCTAATTATTTGGCCCGATTGTGAGGAGC--GGACAGTCGGCTCGTGGACGCTTTTTGTGGCC--------TCTTTTTG-TT-------------T
      sechellia  GAGCGGACAATCGCTC-------ACCTAATTATTTGGCCCGATTGTGAGGAGC--GGACACTCGGCTCGTGGACGCTTTTTGTGGCC--------TCTTTTTG-TT-------------C
         yakuba  GAGCGCACAATCGCTC-------GCCTAATTATTTGGCCCGATTGTGAGGAGC--GGACTGCCGGCTCGTGGACGCTTTTTGTGGCC--------TCTTTTTG-TT-------------T
         erecta  GAGCGGACAACCGCTC-------ACCTAATTATTTGG-GCGATTGTGAGGAGC--GGACAGTCGGCTCGTGGACGCTTTTTGTGGCC--------TCTTTTTG-TT-------------T
      ananassae  GGCAGGACAATCGCTC-------ACCTAATTATTCGTCCTGATTGTCGCTGCCCAGGACTCACGGCTCGTGTAGACTTTTTGTGGCC--------TCTTTTTGTTT-------------T
  pseudoobscura  GAGGGAACAATC-CTCTGGCCAAACCTAATTATTTGACTCAATTGTGAGCCCC--G-------GGCTCGTGGACACTTTTTGTGGCC--------TCTTTTTG-TTCCCTACACGACACT
     persimilis  GAGGGAACAATC-CTCTGGCCAAACCTAATTATTTGACTCAATTGTGAGCCCC--G-------GGCTCGTGGACACTTTTTGTGGCC--------TCTTTTTG-TTCCCTACACGACACT
        virilis  ATCCG-ACAATGGTTC-------ACCTAATTATTTGGCTCG----------------------TGCTCTGCTCTGTTTTTTTTTGTTTTGTTTTGTTTTTTTG-TT---TGT-----TGT
     mojavensis  ATGCA-ACAATGGCTC-------ACCTAATTATTTGGCTCG----------------------------------CGTTTTTTTGTT--------CGTTTTTG-TT---CG------GGC
      grimshawi  ATCCG-ACAATGGTTC-------ACCTAATTATTTGGCTCAATTGTAGGTGGCTCTTGTTGTTTGTTATTGTCTG--TTTTTTTGTTT-------TTTTGTTG-TT---TGTCCGACACT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CGACAAAAAGCGAGCCAATTTTTTTTCTTTCTGGGCCACTTTGTTGCTCTTTTTATGAGTTTTTT--------CCATTGTCAG-TTTTTCCG-GGCCTGTCTCGCAGCCC----TCGAT-
       simulans  CGACAAAAAGCGAGCCAATTTTTTTTCTTTCTGGGCCACTTTGTTGCTCTTTTTATGAGTTTTTT--------CCATTGTCAC-TTTTTCCG-GGCCTGCCCAGCAGCCC----TCGAT-
      sechellia  CGACAAAAAGCGAGCCAATTTTTTTTCTTTCTGGGCCACTTTGTTGCTCTTTTTATGAGTTTTTT--------CCATTGTCAC-TTTTTCCG-GGCCTGCCCAGCAGCCC----TCGAT-
         yakuba  CCACAAAAAGCGAGCCAA--TTTTTTCTTTCTGGGCCACTTTGTTGCTCTTTTTATGAGTTTTTT--------CCATTGTCAC-TTTTTCAG-GGCCTGCCTCGCGGCAC----TCGAT-
         erecta  CGACAAAAAGCGAGCCAA-TTTTTTTCTTTCTGGGCCACTTTGTTGCTCTTTTTATGAGTTTTTT--------CCATTGTCAC-TTTTTCCG-GGCCTACCTCGCGGCCC----TCGAA-
      ananassae  TGAAAAAAAGCGAGCCAA-TTTTTTTCTTTCTGGGCCACTTTGTTGCTCTTTTTATGAGTTTTTT--------CCATTGTCAT-TTTTT------------GAACGACCC----TCGAT-
  pseudoobscura  CGACAAAAAGCGAGCCAA--TTTTTTTTTTGTAGACCACTTTGTTGCTCTTTTTATGAGTTTTTTCCATTGT-CCATTGTCACTTTTTTCCACGGCCTGTACTCCGACCTGGCAGCGAT-
     persimilis  CGAC-AAAAGCGAGCCAA--TTTTTTTTTTGTGGACCACTTTGTTGCTCTTTTTATGAGTTTTTTCCATTGTCCCATTGTCAC-TTTTTCCACGGCCTGTGCTCCGACCTGGCAGCGAT-
        virilis  CGACAAAAAGCGAGCCAA--TTTTT--------AAACGATTTGTCTCTCTTTTTATGAGTTTTTT--------CCATTGTGCG-CATTTTTA----------------------GCTGT-
     mojavensis  CGACAAAAAGCGAGCCAA--TTTTT--------AAACGATTTGTTTCTCTTTTTATGAGTTTTTT--------CCATTGTGCG-CATTTTTA----------------------GCTGTT
      grimshawi  CGACAAAAAGCGAGCCAG--TTTTT--------AAACGATTTGTTTCTCTTTTTATGAGTTTTTT--------CCATTGTAGG-CATTTTTA----------------------CCAGT-
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------TCC-CGCGATGCCTGCCCTACAAACCTCCTAATTACGGCAGTT------------AGTCGTTGTCC-----GGGACA-GGAGAGTAT---------------------------
       simulans  ------TCC-CGCGATGCCTGCCCTACAAACCTCCTAATTACGGCAGTT------------AGTCGTTGTCC------GGACA-GGAGAATAT---------------------------
      sechellia  ------TCC-CGCGATGCCTGCCCTACAAACCTCCTAATTACGGCAGTT------------AGTCGTTGTCC------GGACA-GGAGAATAT---------------------------
         yakuba  ------TCC-CGCGATGCCTGCCCTACAAACCTCCTAATTACGGCAGTT------------AGTCGTTGTCC------GGAGA-GGAGGACATGCGGACATGCGGACATACGGACAAGCG
         erecta  ------TCC-CGCGATGCCTGCCCTACAAACCTCCTAATTACGGCAGTT------------AGTCGTTGTCC------GGGCA-GCAGGACATGCGGACATGCGGACAT-----------
      ananassae  ------CCCGGGCAGTGCCTACGCTACAAACCTCCTAATTACAGCAATTGC-------CCCGGTCCTTGCCC----CGGGTCACACAGGACAT---------------------------
  pseudoobscura  ------CCT-CGCTG---CTGCCCTACAAACATCCTAATTACGGCAGTT------------AGTCGTTGTTC---------CA-GAAGGGA-----------------------------
     persimilis  ------CCT-CGCTG---CTGCCCTACAAACATCCTAATTACGGCAGTT------------AGTCGTTGTTC---------CA-GAAGGGA-----------------------------
        virilis  ------GTT-CG------CTGCTCTACAAACCTCCTAATTGCGGCAATTG--------CCGAGTCCTT----------------CGCGTTC-----------------------------
     mojavensis  TAGCTGTTT-GG------CTGCTCTACAAACCTCCTAATTGCGGCAGTT---------CCGACTCCTTGTCC--CTGGCTGCC-CTAGCTG-----------------------------
      grimshawi  ------GTT-CG------CTGCTCTACAAACGTCCTAATTGCGGCAGTTAGTTGTTGTTAGAGTCCTTGTGCTGCCTGGTGCC-TGGTGTC-----------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBB

                 
   melanogaster  -----GCGGAA-GGACA--TGCG----TGAGTTTATTGCCCGCTCGAATTTCCACTAAAAATTGGGCCGAA----AAAAAAACAACTAGGTAG-------GACTA--GGAACTGCAAACT
       simulans  -----GCGGAA-GGACA--TGCG----TGCGTTTATTGCCCGCTCGAATTTCCACTAAAAATTGGGCCGGA----AAAAAAAAAACTAGGTAG-------GACTA--GGAACTGGAAACT
      sechellia  -----GCGGAA-GGACA--TGCG----TGCGTTTATTGCCCGCTCGAATTTCCACTAAAAATTAGGCCGG-----AAAAAAAAAACTAGGTAG-------GACTA--GGAACTGGAAACT
         yakuba  GACACGCGGAA-GGACC--TGCG----TCCGTTTATTGCTCGCTCGAATTTCCACTAAAAATTGGGCCGGA--------AAAAAACTAGGTAG-------GACTAGGGGAACGGGAAACT
         erecta  -----GCGGAA-GGACT--TGCG----TGCGTTTATTGCACGCTCGAATTTCCACTAAAAATTGGGCCGAA------AGAAAAAACTAGGTAG-------GACCA--GGAACTGGAAACT
      ananassae  -----GCGTAC-GGACAGGGGCG----AGGGTTTATTGCGCGCTCGCATTTCCACTAAAAATTGGACCGAGGCAAAAAAAAAAAAATTCCTAG-------GCCCG--GAA----------
  pseudoobscura  -----CCTGGA-CTGCA-------------GTTTATTACGCGCTCGAATTTCCACTAAAAATTGGACCGAA----------AAAACTAGGTAG-------AGTCC--CG-----------
     persimilis  -----CCTGGA-CTACA-------------GTTTATTACGCGCTCGAATTTCCACTAAAAATTGGACCGAA----------AAAACTAGGTAG-------AGTCC--CG-----------
        virilis  -----CGCGTA-CGTCG--TGCG---TCCTTTTTATTGAGCGCTCGCATTTCCACTAAAAATTGTGCCAT----TCCATTCTTAGCCAGGTAGTTGCCGC--------------------
     mojavensis  -----CAGGCAGCGTCG--TGCGCGTCCCTTTTTATTGCGCGAACGCATTTCCACTAAAAATTGTGCCAT------------------------------------------------TT
      grimshawi  -----CTGAGA-CGTCG-CCTCGTGAGTTCTTTTATTGCGCGCTCGCATTTCCACTAAAAATTGTGCCAT----TCAAGTCCT---TAGGTAG--------------------------T
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGCAAAGCGGACGCGCCTTTTTATTGGTGCACCTTCGGCGGA---------------ACCGCAGGATAACAGCAGTAAAAGCGACGACGAGGACAC-----------AAGGATCCTCGAA
       simulans  AGCAAAGCGGACGCGCCTTTTTATTGGTGCACCTTCGGCAGA---------------ACCGCAGGATAACAGCAGTAAAAGCGACGACGAGGACAC-----------AAGGATCCTCGAA
      sechellia  AGCAAAGCGGACGCGCCTTTTTATTGGTGCACCTTCGGCGGA---------------ACCGCAGGATAACAGCAGTAAAAGCGACGACGAGGACAC-----------AAGGATCCTCAAA
         yakuba  AGCGAAGCGGACGCGCCTTTTTATTGGTGCACCTTCGGCGGA---------------ACCGCAGGATAAGAGCAGTAAAAGCGACGACGAGGACAC------------AGGATCCTCGAA
         erecta  AGCAAAGCGGACGCGCCTTTTTATTGGTGCACCTTCGGCGGA---------------ACCGCAGGATAAGAGCTGTAAAAGCGACGACGAGGACAC-----------AAGGATCCTCGAA
      ananassae  ---GATCCGGACGCGCCTTTTTATTGGTGCACCTTCGACGGA---------------ACCGCAGGACAACACACACACAC---------AGGGGAC-----------AAGGATCTATAAG
  pseudoobscura  --------GGACGCGCCTTTTTATTGGTGCACCTTCGCCGGAACTGAGAGCGCGACGACCGCAGAACAACGGCGAC-----CGGCGATGAGGATGCTGCTCCCGAGGATGCGTCCTGGCC
     persimilis  --------GGACGCGCCTTTTTATTGGTGCACCTTCGCCGGAACTGAGAGCGCGACGACCGCAGAACAACGGCGAC-----CGGCGATGAGGATGCTGCTCCCGAGGATGCATCCTGGCC
        virilis  --------AGACGCGCCTTTTTATTGGTGCACCTTCGGCGAAAATCGGAGTG--ACAACCGCAGTCCAA------------CGGCGAG--------------------------------
     mojavensis  AGGTAGACGAACGCGCCTTTTTATTGGTGCAACTTCAGCCGAAAATTGTGCG--ACAACCGCAGCCCAACAGCGA---------------------------------------------
      grimshawi  TGTTTGACGAACGCGCCTTTTTATTGGTGCACCTTCGGCGAAAATCGGAGCGCAACAACCGCA---------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATCG----------------AG------------AGCGACCTCGCTGC-ATTAGAAAAC-------TAGATCAGTTTTTTG---------TTTTG-GCCGACCGATTTTTGTGCCCG-G-
       simulans  ATCG----------------AG------------AGCGACCTCGCTGC-ATTAGAAAAC-------TAGATCAGTTTTTTG---------TTCTG-GCCGGCCGATTTTTGTGCCCG-G-
      sechellia  ATCG----------------AG------------AGCGACCTCGCTGC-ATTAGAAAAC-------TAGATCAGTTTTTTG---------TTCTG-GCCGGCCGATTTTTGTGCCCG-G-
         yakuba  ATCG----------------AG------------AGCGACCTCGCTGC-ATTAGAAAAC-------TAGATCAGTTTTTTG---------TTCTG-GCCGTCCGATTTTTGTGCCCG-G-
         erecta  ATCG----------------AG------------AGCGACCTCGCTGC-ATTAGAAAAC-------TAGATCAGTTTTTTG---------TTTCGCGTCCGCTGATTTTTGTGCCCGTT-
      ananassae  GTCGTCGTGTCGTGGCTGGAAA------------ATGTAGTGCGCTGCTTTTAGAAAAC-------TAGATCAGTTTTTTG---------TTCTA-TTTGCTCGATTTTTGTGCTCT-G-
  pseudoobscura  ATGGC---------------AG------------GACGACCTCGCTGC-ATTAGAAAAC-------TAGATCAGTTTTTTG---------TTCTA---------ATTTTTGTGCCCT-GC
     persimilis  ATGGC---------------AGGACGACGATGACGACGACCTCGCTGC-ATTAGAAAAC-------TAGATCAGTTTTTTG---------TTCTA---------ATTTTTGTGCCCT-GC
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ---------------------------------------------------------------------------TTTTTGGTAAAGATTTTTGA-G--------TTTTTGGTCCCG-T-
      grimshawi  ---------------------------------------------TAT-ATTAGAAAAAATATGCGTGGGTCCTT---------------GTTGC-G---------TTTTGGTCCCG-T-
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --TGCTCTC-----TTTACG--------GTTTATGGCCG---CGTTCC-----------------------------------CATTTCCCAGCTTCTTTGTT---CCGGGCTCAGAAAT
       simulans  --TGCTCTC-----TTTACG--------GTTTATGGCCC---CGTTCC-----------------------------------CATTTCCCAGCTCCTTTGTT---CCGGGCTCAGAAAT
      sechellia  --TGCTCTC-----TTTACG--------GTTTATGGCCC---CGTTCC-----------------------------------CATTTCCCAGCTCCTTTGTT---CCGGGCTCAGAAAT
         yakuba  --TGCTCTC-----TTTACG--------GTTTATGGCCT---TGTTTCC---ATTTCGTCATTTTTCCATTTTTCTATTTTTCCATTTCCCAGCTCCTTTGTG---CCGGGCAAAGAAAT
         erecta  --TGCTCTC-----TTTACG--------GTTTATGGCCC---CGTTTCCATTATTTCGTCATTTTTCCA--------------CATTTCCCAGCTCCTTTGTG---CCGCTCAAAGAAAT
      ananassae  --C-TTCGC-----TTTATG--------GTTTATGGTCCTCGCTTTTC-----------------------------------CATTTCCCAGTTCCATTGT------------------
  pseudoobscura  CCTGCTCTC-----CTTATG-CTTTATTGTTTATGGTCC---ATTTCC--------------ATTTCCATTTT----------CATTT-CCACTCCCATTGTTTGGCCGCAAAACAAACT
     persimilis  TCTGCTCTC-----CTTATG-CTTTATTGTTTATGGTCC---ATTTCC--------------ATTTCCATTTT----------CATTT-CCACTCCCATTGTTTGGCCGCAAAACAAACT
        virilis  ---------TTTATGGTATGGGCT----CGTTTTGGTAC---CATTTT----------------------------------------------TCTGTTGTT---TGCGGCAAAGAAAT
     mojavensis  --TTTGC--TTTTTGTTATG---------TTTGTGGCA---------------------------------------------------------------------------AAGAAAT
      grimshawi  --TTCGC--TTAAATTTATG-GCTGCAACGTTTTGGTCC---CGCTTC---------------------------------------------GTTCATTGTTTG-TGTGGCAAAGAAAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTGTAT-GGAA-TTAT---------------------------------GG-----TATATGCAGATTTTTAT-----GGGT--CCCGGC--GATCCGG--------TTCGCGGA-----
       simulans  CTGTAT-GGAA-TTAT---------------------------------GG-----TATATGCAGATTTTTAT-----GGGT--CCCGGC--GATCCGG--------TTCGCGGA-----
      sechellia  CTGTAT-GGAA-TTAT---------------------------------GG-----TATATGCAGATTTTTAT-----GGGT--CCCGGC--GATCCGG--------TTCGCGGA-----
         yakuba  CTGTAT-GGAA-TTAT---------------------------------GG-----TATATGCAGATTTTTAT-----GGGT----CGCC--GATCTAG--------TTCGCGGA-----
         erecta  CTGTAC-GGAA-TTAT---------------------------------GG-----TATATGCAGATTTTTAT-----GGGT----CGCC--GATCCGG--------TTCGCGGA-----
      ananassae  -TGTAC-AAAA-TTAT---------------------------------GGTC---TATATGCAGATTTTTATGTCCCGGGA----CGGT--GATCTAG--------TTCGCGGA-----
  pseudoobscura  CCGGACGGGAA-TTAT---------------------------------GGTATGGTATATGCAGATTTTTAT-----GGGCACTCGGGT--GATCTAG--------TTCGCGGA-----
     persimilis  CCGGACGGGAA-TTAT---------------------------------GGTATGGTATATGCAGATTTTTAT-----GGGCACTCGGGT--GATCTAG--------TTCGCGGA-----
        virilis  GGTTCA-GGAA-TTAT---------------------------------GG-----TATATGCAGATTTTTAT-----GGGC----CGT---GCGCTGT--------TTCGCGGAATT--
     mojavensis  GGTTCA-AGAACTTATTTCCTCAACATATACATGTATACAATATATAGATG-----TTTATGCAGATTTTTAT-----GGGC---TCGTA--GCGTCGTATGGTTCGTTCGCGGAATTTT
      grimshawi  GGTTCA-AAAA-TTAT------------------------------GGCAG-----TTTATGCAGATTTTTAT-----GGAC----CGTGTTTCGCTGTTGAGGC--TTCGCGGAAAT--
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------ACGG--GAGTGTCCTGCCGCGAGAGGTCCTCGCCGGCGATCCTTGT------------CGC-CCGTA--TTAGGAAAGTAGATCACG---TTTTTTGTTCCCATTGTGCGCTTT
       simulans  ------ACGG--GAGTGTCCTGCCGCGAGCGGTCCTCGCCGGCGATCCTTGT------------CGC-CCGTA--TTAGGAAAGTAGATCACG---TTTTTTGTTCCCATTGTGCGCTTT
      sechellia  ------ACGG--GAGTGTCCTGCCGCGAGAGGTCCTCGCCGGCGATCCTTGT------------CGC-CCGTA--TTAGGAAAGTAGATCACG---TTTTTTGTTTCCATTGTGCGCTTT
         yakuba  ------ACGG--GAGTGTCCTGCCGCGA--GGACCTCAGCAGCGATCCTCGT------------CGC-CCGTA--TTAAGAAAGTAGATCACG---TTTTTTGTTCCCATTGTGCGCTTT
         erecta  ------ACGC--GAGTGTCCTGCCGCGA--GGACCTCAGCGGCGATCCTTGT------------CGG-CCGTA--TTAAGAAAGTAGATCACG---TTTTTTGTTCCCATTGTGCGCTTT
      ananassae  ------ACGA-CCAATGTCCTGCCGCGAGTGGTCCT------CTATTTTTGG------------------GTA--TTAGGAAAGTAGATCAAG---TTTTTTGTTTTCATTGTTTGATTT
  pseudoobscura  ------ATGGGCGCGTATCCTGTAGCGCTGGGACCTCGAC--CGGCCCTCGGAGGATGTCTGTATGT-CTATA--TTAGGAAAGTAGATCAAG---TTTTTTGTTCCCTTTGTGCGCTTT
     persimilis  ------ATGGGCGCGTATCCTGTAGCGCTGGGACCTCGAC--CGGCCCTCGGAGGATGTCTGTATGT-CTATA--TTAGGAAAGTAGATCAAG---TTTTTTGTTCCCTTTGTGCGCTTT
        virilis  ------CCGT--CCGTGTCCTGTTGTG---------------CATTCCGAGG--------------ACCCGTAT-TTAGGAATGTAGATCAAAG--TTTTTTGTTTTCATTGTGGCATTT
     mojavensis  CATTTGCTGT--CCATGTCCTGTCGCG---------------CATTCCGAGG--------------A-CCGTATATTAGGAATGTAGATCAAAAACTTTTTTGTTTTCATTGTTTCATTT
      grimshawi  ------TCGG--CCGTGTCCTGTCGTG---------------CATTCCGAGG--------------A-CCGTA--TTAGGAATGTAGATCAATG--TTTTTTGTTTCCATTGT-GCATTT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBB

                 
   melanogaster  TTTC-GCTGCGCTA-G--TTTTTTTCCCCGAACC----------CAGCG-----------AACTGCTCTAATTTTTTAATTCTTCACGGCTTTTCATTGGG--------CT--CCTGGAA
       simulans  TTTC-GCTGCGCTAGT--TTTTTTTCCCCGAACC----------CAGCG-----------AACTGCTCTAATTTTTTAATTCTTCACGGCTTTTCATTGGG--------CT--CCTGGAA
      sechellia  TTTC-GCTGCGCTA-T--TTTTTTTCCGCGAACC----------CAGCG-----------AACTGCTCTAATTTTTTAATTCTTCACGGCTTTTCATTGGG--------CT--CCTGGAA
         yakuba  TTTC-GCTGCGCCA-C--TTCTTTTCCCCGAACC----------CAGCG-----------AACTGCTCTAATTTTTTAATTCTTCACGGGTTTCCATTGCGACGAAAAACA--GGAGGAA
         erecta  TTTC-GCTGCGCCA-G--TTCTGTTCCCCGAACC----------CAGCG-----------AACTGCTCTAATTTTTTAATTCTTCACGGACTTTCATTGGG--------CT--CCTGGAA
      ananassae  TTTC-GCTGCGCTA-G--TTTTTTTCCCAGAACC----------CCGGG-----------AACTGCTCTAATTTTTTAATTCTTCACGGCTTTTCGTAGAG------TGCT--CCTGAAA
  pseudoobscura  TTTC-GCTGCGCTA-G--TTTTTTTCCCCGAACG----------CAGCA-----------AACTGCTCTAATTTTTTAATTCTTCACGGGTTTTTATTGTG--------CT--CCTGGAA
     persimilis  TTTC-GCTGCGCTA-G--TTTTTTTCCCCGAACG----------CAGCA-----------AACTGCTCTAATTTTTTAATTCTTCACGGGTTTTTATTGTG--------CT--CCTGGAA
        virilis  TTTCGGCTGCGCTA-G--TTTTTTTCCCCGAAGC----------CCCTGTACCG------GAATGCTCTAATTTTTTAATTCTTCACGCGTTTTTA----------TGACC--GCCGGAA
     mojavensis  TTTC-GCTGCGCTA-G--TTTTTTTCCCCGAAGCCAGAAAAATGCCGAGTGCCGACTGCCGACTGCTCTAATTTTTTAATTCTTCACGGGTTTTTA----------TGGCCGGGCCGGAA
      grimshawi  TTTC-GCTGCCCTA-GTTTTTTTTTCCCCGAAGC----------CAAAGC----------GACTGCTCTAATTTTTTAATTCTTCACGGGTTTTTA----------CGATC--GCTGGAA
        Summary  BBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAA-------CG--CGG--------------------------------------ACAAGGTTATAAC----------------------------------------------------
       simulans  AAA-------CG--CGG--------------------------------------ACAAGGTTATAGC----------------------------------------------------
      sechellia  AAA-------CG--CGG--------------------------------------ACAAGGTTATAGC----------------------------------------------------
         yakuba  AAA-------CA--CGG--------------------------------------ACAAGGCTATC------------------------------------------------------
         erecta  AAA-------CA--CGC--------------------------------------ACAAGGCTAGCTCTAG-------------------------------------------------
      ananassae  AAAATA---TAT--CTT--------------------------------------ACAAGGTTAGC------------------------------------------------------
  pseudoobscura  AAACTACGGTCT--TCC--------------------------------------ACAAGGTTAGAGC----------------------------------------------------
     persimilis  AAACTACGGTCT--TCC--------------------------------------ACAAGGTTAGAGC----------------------------------------------------
        virilis  AAA-------CA--GTGGAAAAC-ATGAAAAT--------------CGTTTTC-CACAAGGTTACTTAGCACCATTTATACAGAGTCCGCCTCCGCCTCCTGCTCTGCCTCTGCCTCTGC
     mojavensis  AAA-------CGTTTTGGAAAAC-ATGAAAACGCACAGAGCGCGAACGTTTTCTCACAAGGTTACTTAGCACCATTTATA----------------------------------------
      grimshawi  AAA-------CA--GTGGAAAACAACGAAAACTCACTGAAC-----CGTTTTCTCACAAGGTTACTCAGCACCATTTATTCCAATATAGCCAGAGAGCCTCG--------------CTGC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -GCTCTACT------------TACCTG-CAATTGTGGCCATAACTCGCAC----------------TGCT---CT-CGTTTTTAAG---------ATCCGTTTGTT----------TGTG
       simulans  -GCTCTACT------------TACCTG-TAATGGTGGCCATAACTCGCAC----------------TGCT---CT-CGTTTTTAAG---------ATCC----GTT----------TGTG
      sechellia  -GCTCTACT------------TACCTG-TAATGGTGGCCATAACTCGCAC----------------TGCT---CT-CGTTTTTAAG---------ATCC----GTT----------TGTG
         yakuba  -GCTCTACTGACACTTACCCGTACCTG-TAATGGTGGCCAAAACTCGCCC----------------TGCT---CT-CGTTTTTAAG---------ATCC----GCT----------TGTG
         erecta  GACTCTACTGGCA--------TACCTG-TAATGGTGTCCATAACGCGCAC----------------TGCT---CT-CGTTTTTAAG---------ACCC----GTT----------TGTG
      ananassae  -GTTCTACT------------TACCTGTTAATTATGG-----------------------------------------------------------------------------------
  pseudoobscura  -GTTCTAGT------------TACCTGTTAATTGTGGCCATAACTCACATTCACGTCCGCATTCAGTGCT---CT-CATTTTTAAG---------ATAT----GTTCTTT--TCTCTGTG
     persimilis  -GTTCTAGT------------TACCTGTTAATTGTGGCCATAACTCACATTCACGTCCGCATTCAGTGCT---CT-CATTTTTAAG---------ATAT----GTTCTTTTCTCTCTGTG
        virilis  CACTCTACT------------TACCTGTTAATTGTGGCCATAATTCCCAA----------------CGTTCAGCCACATTTTTAAG---------ATAT----TTT----------TAT-
     mojavensis  -----TGCG------------CATATATAGA--GTAGTC-----TCCCGG----------------CTTT--GCC-TATTT--------------ACCT----GTT----------AAT-
      grimshawi  CGCTCTACT------------TACCTGTTAATTGTGGGCATAATTCAGTG----------------TTTTTAACA-CAGTTCTCAACATCCATCCATAT----TTT----------TAT-
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TT----------TG-----TTTGTCCG------CGATGGCATTCACGTTTTTACGAGCTCGT----------TCCTTCGG----------GTCCAAAATTATGCCAGTTTG-TTTTGT--
       simulans  TT----------TG-----TTTGTCCG------------------CGTTTTTACGAGCTCGT----------TCCTTCGGTTCCAACCATGTCCAAAATTATGCCAGTTTGTTTTTGT--
      sechellia  TT----------TG-----TTTGTCCG------------------CGTTTTTACGAGCTCGT----------TCCTTCGGTTCCAACCATGTCCAGAATTATGCCAGTTTGTTTTTGT--
         yakuba  TTTC--------TG-----CTTGTCCGCGATGGCGATGGCATTCACATTTTTATGAGCTCGT----------TCC-TCGGGCCCAACTACGTCTAA-A-TATGCCAGTTTG-TTTTGT--
         erecta  TT-----------------CGTCTCTGGAAAGTAGATGGCATTCACATTTTTATGAGTTCGT----------T--------CCCAACTACGGCTAAGA-TATGCCAGTTTG-TTTTGT--
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  TTTTCTGTTCTGTT-----CTTTTCCG------CTACGGCATTCATATTTTTATGAGGCTGT----------TCCTTCGG--CCGGGCCTGGCATAAATTATTTGAATTTG-TTTTTCCA
     persimilis  TTTTCTGTTCTGTT-----CTTTTCCG------CTACGGCATTCATATTTTTATGAGGCTGT----------TCCTTCGG--CCGGGCCTGGCATAAATTATTTGAATTTG-TTTTTCCA
        virilis  ------------TAGGGCGTG---------------------------------------------------------------------------------------------------
     mojavensis  ------------TGTGGCCAT-------AATTCAGTGCGCAGCCACGTTTTTACCAACT-------------------------------------------------------------
      grimshawi  ------------TAG--------------------GGCGTGTCCATTTGTTTGCCCATTTGTTAACGATCGT------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----CTCTGG------CAATTATTGGAAATTTCATTGGGTCGATT------------------------TCGCTGCCTTCCTTGCTCTTCCCTTGAG-AAAAGTGAATAGGTTGTGCCAT
       simulans  ----CTCTGG------CAATTATTGGAAATTTCATTGGGTCGATTG---------------GGTCGATGTCGCTGCCTTCCTTCCTCTTCCCTCGGG-AAAAGTGAATAGGTTGTGCCAT
      sechellia  ----CTCTGG------CAATTATTGGAAATTTCATTGGGTCGATTG---------------GGTCGATGTCGCTGCCTTCCTTCCTCTTCCCTCGGGAAAAAGTGAATAGGTTGGGCCAT
         yakuba  ----CTCTGG------CAATTATTGGAAATTTCATTGGGTCGACTG------CGTCGATTGAGT-------GATTCCTTCCCT-----------GGG-GAAAGCGAATAGGTTGGGCCAT
         erecta  ----CTCCGG------CAATTATTGGAAATTTCATTGGGTCGATTGGGTAGATGTCGATTGGGTCGATGTCGATGCCTTCCCT----------CGGG-AAAAGTGAATAGGTTGTGCCAT
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  TTTGCTCTGAAATTGTCCATTATTGGAAA-------------------------------------------------------------------------------------------
     persimilis  TTTGCTCTGAAATTGTCCATTATTGGAAA-------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAAAATCGCTGCTCCTGAAGACCAAATGAAATGGATTTGT-GTAAGC-ATTAAAAACGCGAGGCAAGCCCCAAGATTCCTCCACTG-CTTTTTTTATATTGCCCACTGCTAAATGCAGCT
       simulans  AAAAATCGCTGCTCCTGGAGACCAGA-GAAATGGATTTGT-GTAAGCAATTAAAAATGCGAGGCAAGCCCCAAGATTCCTCCACTG-CTTTTTTTATATTGCCCACTGCTAAATGCAGCT
      sechellia  AAAAATCGCTGCTCCTGGAGACCAGA-GAAATGGATTTGT-GTAAGC-ATTAAAAATGCGAGACAATCCCCAAGATTCCTCCACTGTTTTTTTTTATATTGCCCACTGCTAAATGCAGCT
         yakuba  AAAAATCGCAGCTCATGGA-CCCAGT-GAAATGGATTTGT-GTAGAA-------------------TGCCCCAGTTTCATTCGCGG--CTTCTCTACATT-GCTACTGCTAAATGCAGCT
         erecta  AAAAATCGCTGCTCTTGGA----GAT-GAAATG---CTGTAGTAGTA-------------------TGCCAAAGCTTCATT--CTG--CTTTTTTATTTT-CTCACTGCTAAATGCAGCT
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AATTC----------GTCGATTGTTT------------------------------------------------------AAAAATTAAATTACTTATGTTGCCATTCATA-----CAT-
       simulans  AATTC----------GTCGATTGTCTGAAAAGCGTTCTTCAAGCTGAAGCACTTTTTTATGATG---------TTTGCTAGAAAATTAAATTACTTATCTTGCCATTCATA-----CAT-
      sechellia  AATTC----------GTCGATTGTCTGAAAAGCGTTCTTCAAGCTGAATCACTTTTTTATGATG---------TTTGCTAGAAAATTAAATTACTTATGTTGCCATTCATA-----CATC
         yakuba  AATTCGAGTCGCTAAGTCGATTGTCTGAAAAGTGTTCTCTAAGCTGAAGCACTTTTTTATGATGTTTGCGATGTTTGCTGGAAAATTAAATTACTTATGTTGC----CATA-----CAT-
         erecta  AATTT----------GTCGATTGTCTGAAAAGTGTTCTCTAAGCCGAAGCACTTTTTTATGATG----------TTGCTAGAAAATGAAATCACTTATGTTGC----CATA-----CAT-
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  -------------------------------------------------------------------------------------------------TGCTGCGCTTCCTAGGGCCCAT-
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRRRRRRRRRRRRMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -CCCCTCACATTTTATGGCCATTTGA--GTGCGGGGTGCACA--GTTCTGTCTTAAGTGGCGGATGGAAACCAC-----CACATTTACTCGAG-----GGATGATGTGCT----------
       simulans  CCCCCTCACATTTTATGGCCATTTGA--GTGCGGGGTGCAAA--GTTCTGTCTTAAGTGGCGGATGGAAACCAC-----CACATTTACTCGAG-----GGATGATGTGCT----------
      sechellia  CCCCCTCACATTTTATGGCCATTTGAGTGTGCGGGGTGCAAA--GTTCTGTCTTAAGTGGCGGCTGGAAACCAC-----CACATTTACTCGAG-----GGATGATGTGCT----------
         yakuba  -CCCCAGACATTTTATGGCCATTTGA--GTGCGGGGTGCGCA--GCTCTGGCTCAAGTGGAGGATGGAAACCAC-----CACATTTATTCGGG-----GGATGATGTGCTCTAATACCTA
         erecta  -CCCCAGGCATTTTATGGCCATTTGA--GTGCGGGGTGCGCA--GTTCT-GCTTAAGTGGCGGATGGAAACCAC-----CACATTTATTCGAG-----GGATGATGTGCT----------
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  -ACCCTTACACCCCATGACCC----A--GCCCCCTGTGCACACTGTTTTGGCTTGATTGACGCTGATAGGGCACGTGTTGGCAATTATTTGAGCATAAACATGAAAAGCT----------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----CTAATATCTCCTCATCAAAT------GGGATGGT-----TTCT--------ATGGAAA----GGCAAAATCGTTGTAAAGTGAGGCGGAGTTAAAAA---ATACC----TTGTTA-
       simulans  ----CTAATACCTCCTCATCAAAT------GGGTTGGTCTCTACTCT--------ATGGCAG----GGCAAAATCTTTGTAAAATGAGGCGGAGTTAAAAA--CATACC----ATGTTA-
      sechellia  ----CTAATACCTCCTCAACAAAT------GGGATGGT-----CTCT--------ATGGCAG----GACAAAATCTTTGTAAAATGAGGCGGAGTTAAAAA--CATACCTAAAATGTTA-
         yakuba  ATACCTAATACCTCCTCATCAAACGGGCTGGGGATGGT-----CTCTT----CGTATGGAGAGTGTGGCGAGATCTTAG-AAAGCGAGGCGGAGTTAAAAA-----GCC----AAGTTA-
         erecta  ----CTAATACCTCCTCATCAAAT------GGGATGGT-----CTCTT----CGCATGGAGA--GTGGCAAACTCTTGGAAAAGTGAGGCGGAGTTAAAAA-----GCC----GTGCT--
      ananassae  ------------------------------------------------------------------------------------------------------------------------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ----------TCTTCTGGTCAAAT------CAGATGAC-----TTCTTGTTGAGCACGCCAA-----ACAGGCTCTCA-----GCGTGACT----------TACAGACT----GCCTTA-
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  -----------------------------------------------------------------------------------GTGAAACCGAATTGACAATACATACG----CCATTAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------TAGCCTTTTTAAAATAACACAAGAT----------------CGTTCGAATTGACTAGAAATATCAAAGTCTTTTTGTATTGAAGCGAGTGT--------------AGT------
       simulans  ------TAGCC-TTTTGAAATATTACAAGAT----------------TGTTAGAATTGTCTGGAAATGTCAATATCCTTTTTTATTTAAGCGTGTGT--------------AGT------
      sechellia  ------TAGCC-TTTTGAAATATTACAAGAT----------------TTTTAGAATTGTCTGGAAATGTCAATATCATTTTTTATTTAAGCGTGTGTCAATATATAACAGCAGT--AAAA
         yakuba  ------TAGCT-TTCTGAAATATGTAAGGATATAAAACATGGATATATATATATATTGACAAGAAATACCAAAGACCTCTTGCATTTAAGCGAGTGC--------------AGC------
         erecta  -------------------ATATAACAAGATTTTTGATATTCAGTTATGTATATATGGACAAGAAATATCAAAGACCTTAT---------------------------------------
      ananassae  -------------TTTAAAATATTATAGTAC----------------TCTTC--CTCGAGGAAAAATATTA--------TTTTACTCGAGTCATAAA--------------AATCTGAAA
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ---------------------ACAAATTGGT---------------------------AT------CATTAA---------------------------------------AAT------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ATACGT-------------ATGTAAACAGAT---------------------------ACAAGATACATAAACACACACACACATATATACAC------------------AAT------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------CTCAATTTAT----GCTTAATT---------------------TTAAGAA-ATACATCTCTTTAT---------TAG-----CCCCAAAATGA--AAC-AAATGGTCTACT
       simulans  ---------CTCAATATAT----GCTTATTTAAGCTTAAATGCGCATATAAATTAATAAAGTATACCTTTTTAT---------TAG-----CACCAAAATGA--AACAAAATGGTATAGT
      sechellia  ATAT----ATGCAATATAT----GCTTACTTAAGCTCAAATGAACATATAAATTTATAA----------TATAT---------TAG-----CACCAAAATGA--AAC-AAGTGGCATACT
         yakuba  ---------CCAAATATATACATACGTACCTATT------------------TCCATAT-GTATATTGCTTTAT-----------------TACTCTAATGGTCTAC-AAATGGTCTACT
         erecta  ----------CAAATATGT-------TGCCT--------------------------------------TTTAT-----------------CCTCGAAATGA--AAC-AAATGCTCTACT
      ananassae  CTTTTGGATAACAACATAT----ATATATTT---------------------TTGTTTA----------TTTAT---------TAGATAGAGACTATACCTA--AAT-TTATACTATATA
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ---------TTGGCCAGAA------ATGTTTA--------------------TTAAAAA-AATATTAAGTTCGT---------GAA-----GCTCAAGAGCT--AGC-CATTGATCACTT
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ---------CTTAATACAA----TGAAATTTA--------------------TCGAATA-AAATTTTCATACGTATTTCTAACAAA-----CCCTTAAATTT--AGA-AAATGGGCTTCT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AATTAAGCAAGTCAACAGAATTTTTATGCAATTA-TTCAAAAT---GAAATAATATATACATA--AGATGTTTTTG------GGAATCTGTCATG---GGGTTTC----TGAAATAGGTT
       simulans  AATTTAGCAAGTCAACAGATTATTTAAGCTTTTA-GTCAAAAT---GAAATAATATATATGTG--CGTATTTTTTT------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      sechellia  AATTCAGCAAGTCAACAGATTATTTAACCAATTA-TTCAAAAT---GAAATAATATATATGTG--TGTTTTTTTTT------AAAATCTGGCATGT--GGATTTC----TAAAATAGA-T
         yakuba  AATTTAGCAAGTCGGAAGATTATTTCAGCAATAA-TTCAAAAG---AAAATAAAATATACCTA--TG---CCGTTG------AAAATGTGCCAA----GGGGTTT----CAAAATAGA-T
         erecta  AATTTGGCAAGTCAAAAGATCAGTTCAGCAATTA-TTCAAAAG---AACATAAAATATGCGTA--TA---TTTTTG------GGAATGTACCAG----TGCTTTC----CAAAATAGA-T
      ananassae  AATATAAAAACTATATATTTTATTT-AGTTTTTA-TT-ACCAG---GAAATCATATAGAAGTT--TATGC------------------------------TTTTT----TTACAAATT-T
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  TGCT-----AATTGA------AATTCAGTTT----TTCAAATA---AAAAGTATATATATATA--AAATCTCTATG--------------------------------------------
     mojavensis  ----AAGCAAATC--------AATTCAGTTTGTG-TGCAATTATCCTAAAATACACGCGAAAA--AGTTGCCCAAA----------------------GAAATTTGGTGAAAATTATT-T
      grimshawi  TTCT-GGCAAGTG----------TTATATTTATATTTTTACTA---TTGGATATGTATAAATGTTTGTTCTTTATGCACTGTAAATTCTGGAATGCCTGGATTTTAGATGAAATTGGT-T
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBB

                 
   melanogaster  T----GCCAAACAAATTTTAAGTA----TAAATGTATA-----CATATG--TCAA---CTAATAAAT-TTAGCAAATAAAAT---GTACCTGCAAGTAT--------------------C
       simulans  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      sechellia  T----GCCAAACAAATTGTAAGTA----TATATTTATACATATCATATG--TCAA---CTAATAAAT-TTAGCAAATAAAAC---GTACCTGCAA-------------------------
         yakuba  T----TAAAAGAAAATTATGAGCA----CATGTGCA----------------CAA---CTAATAAGG-TTCGCATGTAAAAC---TCACCTGCTTAGAT--------------------C
         erecta  T----GCCAAACAAAT------------------------------------CAA---CTAATAACT-TT--------------------------------------------------
      ananassae  T----ATCATAAAACTTTTATGTATTTTTAAGTGTTGGCCTATT--------TTA---GGAATGATT-TT-----------------ACTACCAA-------------------------
  pseudoobscura  -----------------------------------------------------------------------------------------------GTATTTAAAGCCGTTTTGATCCTCT
     persimilis  -----------------------------------------------------------------------------------------------GTATTTAAAGCCGTTTTGATCCTCT
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  T----GACAGAAATCTTTATAGAA--------TGTTTAAGAAATATTTTATTCAA---ATATAAAAATTTCGTAA----------ATAACTGAGA-------------------------
      grimshawi  TCCTAGCCAGAGCACTTCTTTGAG-ACACCATTGTTTGCCGGACAGCTGACCGGATGGGTATGGAGG-ATCGTGAAGTTATCGGCATAGTTGCGT-------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TATAAATTTATTGGACCAATTTTGTGTAAAAAACTGAACTG------------------GCAC------------TCTTC------------------------CCAAGAATG--GGACT
       simulans  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATT------------------------GTAAAAAAG--GGGCT
      sechellia  TATACATTTATTGGATCAA--TTATGTAAAAAACTGAGCTG------------------GCAC------------TCTTC------------------------CAAAGAATG--GGACT
         yakuba  TATGAATTTA----AAAAA--CTGTTGTAAATCCTGCGTTG------------------GCAC------------TCTTC------------------------CCAAAAATG--CGTCT
         erecta  ----AATTTA----AAAAA--CTG--GGCAATCCTGAGTTG------------------GCAG------------TCTTC------------------------CCAAGAATG--GCTCC
      ananassae  TTTGTGTTTTTTGGCCAAA--ATACTTAAATTAATTAACTG------------------A------------------TT------------------------TAAACAAT------TT
  pseudoobscura  TGTATGTTTG-TGGCTTAA--CTTT-------------TTG------------------GCTC------------GCTTC----TGCA----------AGATCGCAAAGAATG--GGAAC
     persimilis  TGTATGTTTG-TGGCTTAA--CTTT-------------TTG------------------GCTC------------GCTTC----TGCA----------AGATCGCAAAGAATG--GGAAC
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  -------------GATAAA--TTCT-CTAAATTAAAGAGTAT--ATATTAAAATAGCTGCACTG--------------------------------------------------------
      grimshawi  -------------GGCAAA--T-----TGAATTTGGCACTGTCGGCACCCAAATAGCAGGCACCATAGGCGCTACTCTTGGTGATGCACACCAGCTTGAGATTGTAATCGATGCTCATCT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TCGAGGACTCCT----TGCTGAA----TCACTTACTCAACCC-ATTCCAACTCATCCAAT-CCGCGC--AATCATCATAAATT-TTGGCCTTTTTGTTGTAATTGTTTTATGGCAGAAAT
       simulans  TCCAAGAGGATGAGATCGGTGGA----TCATT---TCTAACC-ACCC--ACTCATC--AT-CGGC-----ATCATCATAA----TTAGTCTTTGTGTAATGGTTAT---------GAGAA
      sechellia  TCGAGGACTCCG----TGCTGAA----TCACTTACTCAACCC-ATCCCAACTCATCCAAT-CCGCGC--AATCATCATAAATT-TTGGTCTTTTTGTTGTAATTGTTTTATGGCAGAAAT
         yakuba  GCGAGGACTCCG----CGCTGAA----TCACTTACTCAACCC-ATC----------CCGT-TCGCGC--AATCATCATAAATG-TTGGTCTTTTTGCTGTAATTGTTTTATGGCAGAAAT
         erecta  TCGAGGATTTCG----GGCTGAA----TCACTTACTCAACCC-GTCG------ATTCCGT-CCGCGC--AATCATCATAAATTCTCGGTCTTTTTGCTGTAATTGTTTTATGGCAGAAAT
      ananassae  GTGAGGC---------TCATGGA----TGACAGA---GACCC-CTTC---------TAATGCCTCAC--AATCATCATAAATTGTTGCCATTTTTGGCGTAATCGTTTTATTACACAAAT
  pseudoobscura  TGGAAAATGCTT----TGTTCGG----TCTCTCACCCTCCCCGATCC------------------------------------------------------ATTATTTTATGGCGGAT--
     persimilis  TGGAAAATGCTT----TGTTCGG----TCTCTCACCCTCCCCGATCC------------------------------------------------------ATTATTTTATGGCGGAT--
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  TCGAGATCTCCC----TGGTGAAAGCGTCCTTCATCAGATTC-C---------AACTGCT-CCACACGGAGCCAACGCAGA---------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TACTCAATCATCA-AGCATAATTCCCT----CGTTTTCGC
       simulans  TAATC-ATCATCA-AGCATAAT--CCT----CG--TTCGC
      sechellia  TACTCAATCATCA-AGCATAATTCCCT----CGTTTTCGC
         yakuba  TACTCAATCATCA-AGCATAATTCCCT----CGTTTTCGC
         erecta  TACTCAATCATCA-AGCATAATTCCCT----CGTTTTCGC
      ananassae  TACTCAATCATCA-ATCATAATTCCGTTTGCCGTTTTC-C
  pseudoobscura  ------ATCATGGCAGTACAATTTGCT----CGGCATTTT
     persimilis  ------ATCATGGCAGTACAATTTGCT----CGGCATTTT
        virilis  ----------------------------------------
     mojavensis  ----------------------------------------
      grimshawi  ----------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB


kni