crm
                 
   melanogaster  CCCATGCCTAGCCATAGAGAGCCAGTGAGATTCCCAGAGCTGAATACTCCAAACTGCGAT------ACTCCATTCACGTGGTAATTGCAGTCCGAGAGCTGAG-----------AGCGCT
       simulans  CCCATGCCGAGCTATAGAGAGCCAGTGAGATTCCCAGAGCTGGAT-------ACTGCGAT------ACTCCATTCACGTGGTAATTGCAGT-CGAGAGCTGAG-----------AGCGCT
      sechellia  CCCATGCCGAGCTATAGAGAGCCAGTGAGATTCCCAGAGCTGGATACTCCAAACTGCGAT------ACTCCATTCACGTGGTAATTGCAGT-CGAGAGCTGAG-----------AGCGCT
         yakuba  CCCATGCCGAGCCATAGAGAGCCAGAGAGATTCCCAGAGCTGGACTCGCC--TTT-------------TCCATTCACGTGGTAATTGCAGT-CGAGAGCTGAG-----------AGCGCT
         erecta  CCCATGCCGAGCTGCAGAGAGCCAGAGAGATTCCCAGAGCTGGACTCTCC--ACT-------------TCCATTCGCGTGGTAATGGCAGT-CGAGAGCTGTG-----------AGCGCT
      ananassae  ---------TACTGCTAAGAGCCAG---------------------------------------------------------AGTTACGG--CAAGATCTGAG-----------ATTG--
  pseudoobscura  CCCCTG---GGCCCCTGGGCCTCTG----ATTCCCA--------------------------------TTCACTTCCAGCATAATTGCAAG-CCCAAGTT-TG-----------AGCGCT
     persimilis  CCCCTG---GTCCCCTGGGCCTCTG----ATTCCCA--------------------------------TTCACTTCCAGCATAATTGCAAG-CCCAAGTT-TG-----------AGCGCT
        virilis  CCTTTTCAATGTTATACAAC--TAGCTACATTCCCAG-----------------------------------------------------------------------------------
     mojavensis  CCCTTGGAGTGTTATACAAC-TTGGTTTCATTCCCAG-------------------CGTTTAGCCAGCTCAGCTGTCCCATTCATTGCGTA-CAGGAACTAAGCTGAAGAGCCCAACACT
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAACGAAGTCGAAAATGCTTTATGACCCTGCCAATAGATG-------------------------------------------AGGGGTTTTGCAATCAGCCAGC------GAATGAATA
       simulans  AAACGAAGTCGAAAATGCTTTATGACCCTGCCAATAGATG-------------------------------------------AGGGGTTTTGCAATCAGCCAGC------GGATGAATA
      sechellia  AAACGAAGTCGAAAATGCTTTATGATCCTGCCAATAGATG-------------------------------------------AGGGGTTTCGAAATCAGCCAGC------GGATGAATA
         yakuba  AAACGAAGTCGAAAATGCTTTATGACCCTGCCAATAGATG-------------------------------------------AGGGGTTTTGCAATCAGCCAGC------GCATGAATA
         erecta  AAACGAAGTCG-AAATGCTTTATGACCCTGCCAATAGATG-------------------------------------------AGGTCTTTTGCAATCAGCCAGC------GGATGAATA
      ananassae  ----------------ACTTTTTG---CTG-----GAATG-------------------------------------------AGAGGCTTTGCAGCT------T------CGATGAATA
  pseudoobscura  AAACGAAGTCGAAAATGTTTTATGAGTGTGCCAATAGATGTACAGACATAGATACA----TATGTATCTTAAGGTGGCACCTAGAGGGTTTTGCAATCAGCTCGC------CAATGAATA
     persimilis  AAACGAAGTCGAAAATGTTTTATGAGTGTGCCAATAGATGTACAGACATAGATACATATGTATGTATCTTAAGGTGGCACCTAGAGGGTTTTGCAATCAGCTCGC------CAATGAATA
        virilis  ---------------------------------------------------------------------------------------------------------------GCATGAATA
     mojavensis  AGACAA---CAAAAATG----------------------------------------------------------------------------------GTCGTC------GCATGAATA
      grimshawi  ----------------------------------------------------------------------------------------TTTAGCTGTTG---GCCCAAAATGGATGAATA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AACATCTTTGTAAAATGATGATGCC----AG--CACT-GAAATAATTTCACACGTTTCTC---GCACACACAGCATC------TA--TCTAGT--GTGTGTATG-CGTCATGAGGGGCAG
       simulans  AACATCTTTGTAAAATGATGATGCC----AG--CACT-GAAATAATTTCACACGTTTCTC---GCACACACAGCATC------TA--TCTAGT--GTGTGTATG-CGTCATGAGGGGCAG
      sechellia  AACATCTTTGTAAAATGATGATGCC----AG--CACT-GAAATAATTTCACACGTTTCTC---GCACACACAGCATC------TA--TCTA----GTGTGTATG-CGTCATGAGGGGCAG
         yakuba  AACATCTTTGTAAAATGATGATGCC----AG--CACT-GAAATAATTTCACACGTTTCTC---GCACACACAGCATC------TA----------GTGTGTATG-CGTCATG-AGGCCAC
         erecta  AACATCTTTGTAAAATGATGATGCC----AG--CACT-GAAATAATTTCACACGTTTCGC---GCACACACAGCACA------CACATCCAATGTGTGTGTATG-CGTCATG-GGCCCA-
      ananassae  AACATCTTTGTAAAATGATGATGCC----AG--CACT-GAAATAATTTCACACATTTCTC---GCACACACAGCTCC------CC--G-------AAATATATA-TGCCATG----CTAG
  pseudoobscura  AACATCTTTGTAAAATGATGATGCCAGCAAG--CATC-GGAATAATTTCACACGTTTCAG---GCACACACAGCCTC------AGAGAGTAGA--ACCCGTTTGTCGCCACAAATATGCG
     persimilis  AACATCTTTGTAAAATGATGATGCCAGCAAG--CATC-GGAATAATTTCACACGTTTCAG---GCACACACAGCCTC------AGAGAGTAGA--ACCCGTTTGTCGCCACAAATATGCG
        virilis  AACATCTTTGTAAAATGATAATGCC----GT--CGCA-CAAATAATTTCACACATTCAAC---GCATACACAGCGCCCAGTCA--------GC--GCGCGTATT-GGCTATG-CTGTCAT
     mojavensis  AACATCTTTGTAAAATGATAATGCC----GCTACGCA-CAAATAATTTCACACATTTAAC---GCATACACAGC----------------------------------------------
      grimshawi  AACATCTTTGTAAAATGATGATGCC----GG--CGCACCAAATAATTTCACACATTCAACACAGCATACACAGCACC-------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGATT------------------------------CGGTTTCGGACGCGGAATCG------AAAT---------------CGGATTCAGATACTTTATTGGCATGGT-ATTTGC-----C
       simulans  AGATT------------------------------CGGATTCGTAGTCGGAATCG------AAAT---------------CGGATTCAGATACTTTATAGGCATGGT-ATTTGC-----C
      sechellia  AGATT------------------------------CGGATTCGGAGTCGGAATCG------AAAT---------------CGGATTCAGATACTTTATATGCATGGT-ATTTGC-----C
         yakuba  AGATTCGCATTCAGACTCGGAGACTCGGAGACTCGGGGACTCGGAATCGAAATCG------AAAT---------------CGGATTCAGATACTTTATAGGCATGCT-ATTTGC-----C
         erecta  -----------------------------------GTGACTTGGATTCGGATTCG------GATT---------------CGGATCCAGATACTTTATTGGCATGGT-ATTTGC-----C
      ananassae  CTATT----------------------------------TTCGCAAT--GTATCT------ACAT---------------GTGTAGCCGATGTATCCATGGGATA-C-ATTGGC-----C
  pseudoobscura  AGACT------------------------------CTGACTCGACACAGATACTGTTGTACAAATGTATCTTCCGCTACACATGTACATATGTATTGTATCCATGGG-ATGTGCTGTGGC
     persimilis  AGACT------------------------------CTGACTCGACACAGATACTGTTGTACAAATGTATCTTCCGCTACACATGTACATATGTATTGTATCCATGGG-ATGTGCTGTGGC
        virilis  GGA--------------------------------GGGGTTTGGTGGAGGGGGTG------GAAGGGG------------GGTGTTC---TGCTGTTTTGGCA-----GTTGGC-----C
     mojavensis  -------------------------------------------------------------------------------------------------------TGGCATTTGGC-----C
      grimshawi  ----------------------------------------------------------------------------------------GCTCCTCAGTTGGCA-----GTTGGC-----C
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AATTTGCACGCTGTCCATTAACG-----------GACCATGCG-----C---CGTTTATCGGACTCGTA----T-----------GCGAGCCATTCTGCCAAT----CCATTTTCATGGA
       simulans  AATTTGCACGCTGCCCATTAACG-----------GACCATGCG-----C---CGTTTATCGGACTCGTA----T-----------TCGAGCCATTCTGCCAAT----CCATTTTCATGGA
      sechellia  AATTTGCACGCTGCCCATTAACG-----------GACCATGCG-----C---CGTTTATCGGACTCGTA----T-----------TCGAGCCATTCTGCCAAT----CCATTTTCACGGA
         yakuba  AATTTGCACGCTGTCCATTAACG-----------GACCATGCG-----C---CGTTTATCGGACTCGAA----T-----------TCGAGCCATTCTG---------CCATTTTCACGGA
         erecta  AATTTGCACGCTGTCCATTAACG-----------GACCATGCG-----C---CGTTTATCGGACTCGCA----T-----------TCGAGCCATTCTG---------CCATTTTCATGGG
      ananassae  AATTTGCACGCTGTCCATTAACG-----------GGCCATGCG-----C---CATTTATCGGA-TCGGA----TCGGCCGGCGGACAGACCGATTCCTCA-------TAATTTTCATGGA
  pseudoobscura  AATTTGCACGCTGTCCATTAACGGGGACCATGGAGACCATGGGCCATTC---CGTTTATCGGA-TCTCA----T-----------TGGATTCATTCTGCCAGCCTCATCATTTTCATGGA
     persimilis  AATTTGCACGCTGTCCATTAACGGGGACCATGGAGACCATGCGCCATTC---CGTTTATCGGA-TCTCA----T-----------TGGATTCATTCTGCCAGCCTCATCATTTTCATGGA
        virilis  AATTTGCACGCTGTCCATTAACA----------TGGCCATGCG-----C---CGCTTATCTAA-CGGCGGCTCC-----------AGGCATCATTCTGCTGGTCTCAACATTTTCATGGA
     mojavensis  AATTTTCATGCTGTCCATTAACG----------AGG-CAGGCG-----TCCACGCTTATCTG-----------T-----------GAGCATTTTTCTGTTGGTCTCATCATTTTCATGGA
      grimshawi  AATTTGCACGCTGTCCATTAACG----------GGACCATGCG-----C---CGCTTATCTGA-CTGCGTCC-G-----------CAGCATT-TTCTGTTGGTCTCATCATTTTCATGGA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TATTAACGCACTGATAATCGC-GACAATCAAACT-----------------------------------------------CG-----TGTTTAGC---------CAACA----------
       simulans  TATTAACGCACTGATAATCGC-GACAATCAAACT-----------------------------------------------CG-----TGTTTAGC---------CAACA----------
      sechellia  TATTAACGCACTGATAATCGC-GACAATCAAACT-----------------------------------------------CG-----TATTTAGC---------CAACA----------
         yakuba  TATTAACGCACTGATAATCGC-GACAATCAAACT-----------------------------------------------CG-----TGTTTAGC---------CAACA----------
         erecta  TATTAACGCACTGATAATCGC-GACAATCAAACT-----------------------------------------------CG-----TGTTTAGCCAACACTCGCAACA----------
      ananassae  TATTAACAAACTGATAATCGC-GACAATCAAATG-----------------------------------------------AGGGCGATGTTGTGC---------CAACA----------
  pseudoobscura  TATTAACAAACTGATAATCGC-AACAATCAAATTACAAATGCGAGGACGGTTGACCGGGGGGGTGGAGACGGAGTGAATGCCT-----TGTTTAGC---------CAACA----------
     persimilis  TATTAACAAACTGATAATCGC-AACAATCAAATTACGAATGCGAGGACGGTTGACCGGGGGGGTGGAGACGGAGTGAATGCCT-----TGTTTAGC---------CAACA----------
        virilis  TATTAACA-TGCGATAATCGC-AACAATCGAAAC-----------------------------------------------GC-----GGCCAAAA---------CAACAAAACAAGGCA
     mojavensis  TATTAACA-ACTGATAATCGC-AACAATCAAA----------------------------------------------------------------------------------------
      grimshawi  TATTAACA-ACTGATAATCGCGAACCATCGAAAC-----------------------------------------------GG-----GGCCAAAA---------CAAAA----------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -------------GTCGCAGCATTTCCAT---------ACCATGGGGGTGGT-------CTCTGCT----GGGTGTT------GCGAATGCGACGCCAATTGG-------TCAGGGTTCA
       simulans  -------------GTCGCAGCATTTCCAT---------ACTG-GGGGGTGGT-------CTCCGCT----GGGTGTT------GCGAATGCGTCGCCAATTGG-------TCAGGGTTCA
      sechellia  -------------GTCGCAGCATTTCCAT---------ACT--GGGGGTGGT-------CTCTGCT----GGGTGTT------GCGAATGCGTCGCCAATTGG-------TCAGGGTTCA
         yakuba  -------------GTCCCAACATCTCCAT---------ACT--GGGGGTGGT-------CTCCGCT----GGGTGTGAGTGTTGCGAATGCGTCGCCAATTGG-------TCAGGGTTCA
         erecta  -------------TTCCCAACATTTCCAT---------ACT--GGGGGTGGTCTGTGGCCTCTGCT----GTGTGTG------GCGAATGCGTCGCCAATTGG-------TCAGGGTTCA
      ananassae  -------------TTTCCATACCAGCCAT---------ACC--AGCCAAGAA-------CCATACCACAAGGGGGTG------GGTGAATCAATGGCAATTGGTCAGGCTTCAGGCTTCA
  pseudoobscura  -------------TTTCCA---TATCTATCAGGGGCGGAGC--GGGGGAGGG-------GGCGACA----GTAGGCC------GC--ATTCGACTGCAATTGG-------TCAGGGTTCA
     persimilis  -------------TTTCCA---TATCTATCAGGGGCGGAGC--AGGGGAGGG-------GGCGACA----GTAGGCC------GC--ATTCGACTGCAATTGG-------TCAGGGTTCA
        virilis  GTTATATAGAGGA-------------------------------GGGGCGG------------------------------------------ACGCAGACAA-------ACGAAATTGC
     mojavensis  -----------------------------------------------------------------------------------GCAATTGCCATGGCAAAAAC-------ACGAAAATTG
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTGTAAA--TGGCCCA-G-CC--------------------------AAATGGGAAGCGGCAGTTGAG-----GAGC-GCCCGAATCAATTG-CCCTGATGGATGCTGCGGCTGTCC--A
       simulans  CTGTAAA--TGGCCCA-G-CC--------------------------AAATGGGAAGCGGCAGTTGAG-----GAGG-GCCCGAATCAATTG-CCCTGATGGATGCTGCGGCTGTCC--A
      sechellia  CTGTAAA--TGGCCCA-GCCC--------------------------AAATGGGAAGCGGCAGTTGAG-----GAGG-GCCCGAATCAATTG-CCCTGATGGATGCTGCGGCTGTCC--A
         yakuba  CTGTAAA--TGG-CCG-C-CC--------------------------AAATGGGAAGCGGCAGTCGAG-----G----GCCCGAATCAATTG-CCCTGATGGATGCTGCGGCTGTCC--A
         erecta  CTGTAAA--CGGCCCA-G-CC--------------------------AAATGGGAAGCGGCAATCAAT-----GGGAAGCCCGAATCAATTG-CCCTGATGGATGCTGCGGCTGGCC--A
      ananassae  CTGTAAA--TGG-ACA-A-TA--------------------------AAAT------------------------------CGAATCAATTGCCCCTGATGGATGCTGCGGCTGTCC--G
  pseudoobscura  TGGTAAA--TGGTGAATG-CT--------------------------CAATGGAAATCGACAATAAAATGCCCGGGA-AATCAAATCAATTGCCCTTGATGGATGCTGCGGCTGTCCGAA
     persimilis  TGGTAAA--TGGTGAATG-CT--------------------------CAATGGAAATCGACAATAAAATGCCCGGGA-AATCAAATCAATTGCCCTTGATGGATGCTGCGGCTGTCCGAA
        virilis  CCTGAAAATCTGACCA-G-TC---------------------------GACGAGGGGCAACAATAAAG-----CGAA-ATAAAAATCAATTGCTGTTGATAGATGCTGTGGCTGTCCGAA
     mojavensis  CCATAAAATTTGACCA-G-TCAAAGTGGGAGAGGGAGAGGGAGAGGGAGAGGAAGGTTCACAATAAAG-----CGAA-AATAAAATCAATTGCTGTTGATAGATGCTGCGGCTGTCC--A
      grimshawi  -----------------------------------------------------------------------------------AATCAATTGCTGTTGATAGATGCTGCGGCTATTT--G
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAG---TTGCAGC--TTTTCGGGTCACTC--------------CGCGCTGGGGC-TGGAG-----------------------GGCTATAAATCCGCAGGCCAGATAATGAAACTAGAAT
       simulans  AAG---TTGCAGC---TTTCGGGTCACTC--------------CGCGCTGGGGC-AGGAG-----------------------GGCTATAAATCCGCAGGCCAGATAATGAAACTAGAAT
      sechellia  AAG---TTGCAGC--TTTTCGGGTCACTC--------------CGCGCTGGGGC-AGGAG-----------------------GGCTATAAATCCGCAGGCCAGATAATGAAACTAGAAT
         yakuba  GAG---CTGCAGC--TTTTCGGGTCACTC--------------CGCGCTGGGGA-ATGAG-----------------------GGCTATAAATCCGCAGGCCAGATAATGAAACTAGAAT
         erecta  AAGCTACTGCAGC--TTTTCGGGCCACTC--------------GGCGCTGGGGGCAGGAG-----------------------GGCTATAAATCCGCTGGCCAGATAATGAAACTAGAAT
      ananassae  AGG------GAGA--TGGGCGGAGGA------------------GCTACGAGGG-GTCAG-----------------------GGCCATAAATCTGCTGGCCAGATAATGAAACTAGAAT
  pseudoobscura  AAG---TTGCAAGATTTTTAGGGTCAACCAAGGAGGGGGGACAGGGGCCAGGGA-GAGCGTCCTGTGGCAGCGTAGAAGGACAGGCCATAAATCTGCAGCTGAGATAATGAAACTAGAAT
     persimilis  AAG---TTGCAAGATTTTTAGGGTCAACCAAGGAGGGGGGACAGGGGCCAGGGA-GAGAGTCCTGTGGCAGCGTAGAAGGACAGGCCATAAATCTGCAGCTGAGATAATGAAACTAGAAT
        virilis  GAG--------------CTCGGGTCAAGCGTGG----------G----TGGGTG-GGCCC-----------------------AACAATAAATCTGCAGCTGAGCTAATGAAACTAGAAT
     mojavensis  GCG--------------CTTG----------------------------GGGTC-G--CC-----------------------GACAATAAATCTGCAGCTGAGATAATGAAACTAGAAT
      grimshawi  GAG--------------TTTGGGTCAGCAGTAG----------GAGTCGAGGAG-GGGAG-----------------------GGCTATAAATCTGCAGCTGAGATAATGAAACTAGAAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMBBB

                 
   melanogaster  GATTGAGGCAAT----CACTGGTGTGGC--CAGCAGT---------------CTGCT---GGCGGAGTTTCCTACGCTCTGCGCATGTCC-----TGGATACA-----------------
       simulans  GATTGAGGCAAT----CACTGGTGTGGC--CAGCAGC---------------CTGCT---GGCGGAGTGTCCTCCGCTCTGCGCATGTCC-----TGGATACA-----------------
      sechellia  GATTGAGGCAAT----CACTGGTGTGGC--CAGCAGC---------------CTGCT---GGCGGAGTGTCCTCCGCTCTGCGCATGTCC-----TGGATACA-----------------
         yakuba  GATTGAGGCAAT----CACTGGTGTGGC--CAGCAGC---------------CCGCT---GGCGGAGGCTCCTCCGCTCTGCGCATGTCC-----TGGGTACA-----------------
         erecta  GATTGAGGCAAT----CACTGGTGTGGC--CAGCAGC-------------------------CGGCGGGTCCTGCGCTCTGCGCATGTCC-----TGGGTACA-----------------
      ananassae  GATTGCGGCAAT----CACTGGTGTGGC--TGGGA-------------------------------------------CTGCGCATGTCC-----TGGATACATGT--------------
  pseudoobscura  GATTGCGGCAAT----CACTGGTGTGGC--TAAAAGG-AGTCCATGTCCATGCCGCCAGAGGTGGAGCATACACTGCTCTGCGCATGTCC-----CTGCCGCA-----------------
     persimilis  GATTGCGGCAAT----CACTGGTGTGGC--TAAAAGG-AGTCCATGTCCATGCCGCCAGAGGTGGAGCATATATTGCTCTGCGCATGTCC-----CTGCCGCA-----------------
        virilis  GATTGCGGCAATCACACACGGGTGTGGC------------------------GAG-----TGTAGA-----------CGTGTACGTGCCGGGCACTGGCTACGGCCAAGGAGGAGCAACG
     mojavensis  GATTGCAGCAAT----CACTGGTGTGGTGGAAGCTGGAAGCTGAGCATTAGAGAG-----TGTAGAATGTG------TGTGTGTGTGTTG-----TGGCTGCG-----------------
      grimshawi  GATTGCGGCAAT----CACTGGTGTGGC--GAGTAGCCAGCACAGCCACAGTCAGCTTGCTGTGGAACGTGC--CACAATGAGAGTCCTGGACT-GGGCTGTGGCTG-------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -----------------CAC--AGCTCGGCGCACATAGCGATAGATACAGATGCAGATACA-GATACAGAGGCAGATAGATACGTATGCGGATACA-T--------------------AG
       simulans  -----------------CAC--AGCTCGGCGCACATAGCGATAGATACAGATGCAGATACA-GATACAGATGCAGA--------------GATACA-T--------------------AG
      sechellia  -----------------CAC--AGCTCGGCGCACATAGCGATAGATACAGATGCAGATACA-GATATAGATGCAGA--------------GATACA-T--------------------AG
         yakuba  -----------------CAC--TGCTCAG-CCACATTGCGATAGATACAGATGTAGATGTA-GATGCAGATACAGATACA----------GATACG-TATGCGGATACGGATACATAGAG
         erecta  -----------------CAG--CGCTCGGCCCACATAGCGATAGATACAGATACAGATGCA-GTTGCAGATACAGATACA----------GATACA-T--------------------AG
      ananassae  -----------------CCT--AAAGCGGAGCACCTAGCTATAGATAC---------------CTACAG---------------------GATACA-T--------------------AG
  pseudoobscura  -------------------------------TACATAGTGATAGATACAG-----GATACAGGATACAGATACAGGACCATGGCC-----AGTACA-T--------------------AG
     persimilis  -------------------------------TACATAGTGATAGATACAG-----GATACAGGATACAGATACAGGACCATGGCC-----AGTACA-T--------------------AG
        virilis  GACACTGGGCTGTGGCTCTTGCCGGGCAATGCGCATGTCCTG-----CAATCAAATACATA-CACACATAT---------------TTTTTGTGCC-T--------------------TT
     mojavensis  -----------------CTT--CAGTCAATGCGCATGTC--------------------------------------------------GAGTGCCAT--------------------TT
      grimshawi  -----------------CTCG-CATGCAATGCGCATGACGAGAG-TCCAACCAAAAACACA-CACACACACACACAGAGATGGGGATGTAAGCATGGC--------------------TT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --AGCACGTTACATTATGTG-----G---------CGAAGG-AC---------TGG-----------------------------------CGATTACCGATTC----------------
       simulans  --AGCACTTTACATTATGTG-----G---------CGAAGG-AC---------TGG-----------------------------------CGATTACCGATTC----------------
      sechellia  --AGCACTTTACATTATGTG-----G---------CGAAGG-AC---------TGG-----------------------------------CGATTACCGATTT----------------
         yakuba  --AGCACTTTACATTATGTG-----G---------CGAAGG-AC---------TGG-----------------------------------CGATTACCGATTC----------------
         erecta  --AGCAGGGTACATTATGTG-----G---------CGAAGG-AC---------TGG-----------------------------------CGATTACCGATGC----------------
      ananassae  CAGGGCCTGTACATTATGTGTTTTTG---------TGGAGACAC---------TCG-----------------------------------CATTTGCC--TTC----------------
  pseudoobscura  --AA-----TACATTATGTA-----G---------AGAAGG-ACCCTCTCTTTTGG----------TCTGTTCTGTTCTGTTCTGTTCTGCCGATTACCGATTC----------------
     persimilis  --AA-----TACATTATGTA-----G---------AGAAGG-ACCCTCTCTTTTGGTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGCCGATTACCGATTC----------------
        virilis  --GGCA---TACATTATGTA-----C----------------AC---------G--------------------------------------------TCGTCT----------------
     mojavensis  --GGCA---TACATTATGTA-----C----------------AC---------GA------------------------------------------TTCGTCT----------------
      grimshawi  --GGCA---TACATTATGTA-----CTATATAGTACAAGTG-AC---------GAG---------GACTACTCTG----------------CAGCTCCTGGTCCAGGTTGAGGTCCAGGA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------C--------GCAG-TTCAGGACCTCTGGATTTGC--GATCCTGCGCAC----GAC-GTGTCAACTTTATTGCGGTTTGACTTTGCC----------GCGGCCCCTCGAA-----
       simulans  ------C--------GCAG-TTCAGGACCTCTGGATTTGC--GATCCTGCGCAC----GAC-GTGTCAACTTTATTGCGGTTTGACTTTGCC----------GCGGCCCCTCGAA-----
      sechellia  ------C--------GCAG-TTCAGGACCTCTGGATTTGC--GATCCTGCGCAC----GAC-GTGTCAACTTTATTGCGGTTTGACTTTGCC----------GCGGCCCCTCGAA-----
         yakuba  ------C--------GCAG-TTCAGGACCTCTAGATTTGC--GATCCTGCGCAC----GAC-GTGTCAACTTTATTGCGGTTTGACTTTGCC----------GCGGCCCCTCGCA-----
         erecta  ------C--------GCAG-CTCAGGACCTCTGGATTTGC--GATCCTGCGCAC----GAC-GTGTCAACTTTATTGCGGTTTGACTTTGCC----------GCGGCCCCTCGAA-----
      ananassae  ------CTGAAACTGGTGT-TTCGGTTTCGCAGTCTTTCA--GATCCTGCGCAC----GAT-GTGTCAACTTTATTGCGGTTTGACTTTCCA----------G-----CTCTGTA-----
  pseudoobscura  ------T--------AGAGTTTCAGGAC-------TTTCA--GATCCTGCGCAC----GACGGTGTCAACTTTATTGCGGTTTGACTTTGCC----------------CCTCGAG-----
     persimilis  ------T--------AGAGTTTCAGGAC-------TTTCA--GATCCTGCGCAC----GACGGTGTCAACTTTATTGCGGTTTGACTTTGCC----------------CCTCGAGGAGTC
        virilis  ----CAC--------TGGA-CCCATGCT-------CTTACCGGATCCTGCGCATTTG-AAC-GTGTCAATTTTATTGCGGTTTGACTTTGCCGCGGCCAGGAAAAGCCCTTCAAG-----
     mojavensis  ----GCT--------CCGG-CTCAGGTTCGC----CTGAACGGATCCTGCGCATTTGAAAC-GTGTCAATTTTATTGCGGTTTGACTTTGCC----------------------------
      grimshawi  CCAGGAC--------CAGG-TCCAGGTCCTG----TTTACC-GACCCTGCGCATTTG-AGC-GTGTCAATTTTATTGTGGTTTGACTTTGCT---GCTGCAAAAAG----TCAGA-----
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------------A----CTCACAAACGTATCCTGGAACC--------CAGGATCCCTGGGC------------TCTGGG-------CTCTG-GACTATCC---------GCCGACCCT
       simulans  --------------A----CTCACAAACGTGTCCTGGAACC--------CAGGATCCCTGGGC------------TCTGGGCTGTGGACTCTG-GACTATCC---------GCCGACCCT
      sechellia  --------------A----CTCACAAACGTATCCTGGAACC--------CAGAATCCCTGGGC------------TCTGGGCTGTGGACTCTG-GACTATCC---------GCCGACCCT
         yakuba  --------------A----CTCACAAACGTGTCCTGGAACCCTAGAACCCAGGAACCCGGGGC------------TCCGGACTCCGGACTCTG-GACT--------------------CT
         erecta  --------------A----CTCACAAATGTATCCTGGAACCCAGGAACTCAGGAACCCGGGGC------------TCTGAACTCTGGACGCTG-GACTAT------------CCGACCCA
      ananassae  --------------G----CCCGAAGCTGTGTCCTGAATCC---------------CCTGGG--------------CAGTCCCCTGAGTCCTGCGACCATT-----------CCGATTC-
  pseudoobscura  -GAGTCAGAGCCAGA----GCCAGAGCCAGATACAAAAACC----------AGGACCATG----------------CAAGGTCCCAGGTTCTG---CT--------------TCGA----
     persimilis  AGAGTCAGAGCCAGA----GCCAGAGCCAGATACTAAAACC----------AGGACCATG----------------CAAGGTCCCAGGTTCTG---CT--------------TCGA----
        virilis  --------------GCGGTCGCTCTGCTCTGCT--------CAGC------GCAGCTCTG-----------------------CTCTGCTCTG-CTCTGTCTTTAGTTAAAGTCGACTTT
     mojavensis  -----------------------------------------AAGTCAAGGAAAAGCCCTGAGGCTGACTGCTTCTTCTTTTTCTTCTTCTTCT-CTCTGTTT--------------CTTT
      grimshawi  --------------G----CCCTCAACTTTATT--------CATCAACTGACATGTTTTG-------------CCTTCTGTTAGTTTGGTCGC-CTCTTTAT-----------------T
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CCAT-----AT-----CCATGATTTACAATTCTCG-TTTTTTTCGCGTTATTTTTTTA-GGGGC--TTTAATGACCGTCGTAAAG-----------------------------------
       simulans  CCAT-----AT-----CCATGATTTACAATTCTCG-TTTTTTTCGCGTTATTTTTTTA-GGGGC--TTTAATGACCGTCGTAAAG-----------------------------------
      sechellia  CCAT-----AT-----CCATGATTTACAATTCTCG-TTTTTTTCGCGTTATTTTTTTA-GGGGC--TTTAATGACCGTCGTAAAG-----------------------------------
         yakuba  CCAT-----TT-----CCATGATTTACAATTCTCG-TTTTTTTCGCGTTATTTTTTTA-GGGGC--TTTAATGACCGTCGTAAAG-----------------------------------
         erecta  CCAT-----TT-----TCATGATTTACAATTCTCG-TTTTTTTCGCGTTATTTTTTTA-GGGGC--TTTAATGACCGTCGTAAAG-----------------------------------
      ananassae  CCAT-----TTTTCGCCCATGATTTATAATTCTTGTTTTTTTTCGCGTTATTTTTTTACGGGGCCATTTAATGGCCATCGTCAGGACAGTCCACAGTACCTTCTCGGCATCCTGCTCTGG
  pseudoobscura  ----------------CCATGATTTACAATTCTCA-TTTTTTTCGCGTTATTTTTTTA-GGGGC--TTTAATGGCCATCGTAAAG-----------------------------------
     persimilis  ----------------CCATGATTTACAATTCTCA-TTTTTTTCGCGTTATTTTTTTA-GGGGC--TTTAATGGCCATCGTAAAG-----------------------------------
        virilis  TTGG-TTGACT-----TTATGATTTACAGCGCTCG-TTTTTTTCGCGTTATTTTTTTA-GGAGC--GTTAATGGCCATCGTAAAG-----------------------------------
     mojavensis  CTGGCTTGACT-----TTGTGATTTATTGCGCTCG-TTTTTTTCGCGTTATTTTTTTA-GG-GC--GTTAATGGCCATCGTAAAG-----------------------------------
      grimshawi  TTAT-TTGCCT-----TCATGATTTACAGCGCTCG-TTTTTTTCGCGTTATTTTTTTA-GG-GC--TTTAATGGCCATCGTAAAG-----------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -------------CCGCAG-G------AGGACCAGGACC-----------------------AGGACTCT------------------------------------------GCTCA--C
       simulans  -------------CCGCAG-GAGGACTAGGACTAGGACC-----------------------AGGACTCT------------------------------------------GCTCA--C
      sechellia  -------------CCGCAG-GAGGACTAGGACTAGGACC-----------------------AGGACTCT------------------------------------------GCTCA--C
         yakuba  -------------CCGCAG-G------AGGACTAGGACC-----------------------AGCACTCT------------------------------------------GCTCA--C
         erecta  -------------CCGCAG-G------AGGACCAGGACC-----------------------AAAACTCT------------------------------------------GCTCA--C
      ananassae  TGTCTTTAAGCCTCCGCTG-G--TGCGACGGAGAGGGTC---------------------GGAGAGTCCT------------------------------------------GTTCA--C
  pseudoobscura  -------------CCGCAG-G--------ACCTGAGACC-----------------------TCTACTCT------------------------------------------GTTCC--C
     persimilis  -------------CCGCAG-G--------ACTCGAGACC-----------------------TCTACTCT------------------------------------------GTTCC--C
        virilis  -------------CCGCAGTG--------------GGCC--------------------------------ATGTCG----CAGTCGCAGTC--------------GCCGTCGTCGT--C
     mojavensis  -------------CCGCAGTG--------------GGCCTGCTTCCAGCTCGACTGCCAACACCAACACCAATACCAATACCAATACCAATCCAA-CTGCCAACTGCCCATTGCAGTTGC
      grimshawi  -------------CCGCAGTG--------------GGCC------------------CGATTTCGACTTCGACGTCC----AAGTCGAAGTCGAAGCTGATGTT--GCAGTTGCAGT--C
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATTTCGCGCACTGATTCTAAAAAATGAAATCA-TTTTTTCTTGAA---------TTTCAC--------------------GGCG-CGCCT-CGAGCAGGACTCTTTG-------------
       simulans  ATTTCGCGCACTGATTCTAAAAAATGAAATCA-TTTTTTCTTGAA---------TTTCAC--------------------GGCG-CGCCT-CGAGCAGGACTCTTTG-------------
      sechellia  ATTTCGCGCACTGATTCTAAAAAATGAAATCA-TTTTTTCTTGAA---------TTTCAC--------------------GGCG-CGCCT-CGAGCAGGACTCTTTG-------------
         yakuba  ATTTCGCGCACTGATTCTAAAAAATGAAATCA-TTTTTTCTTGAA---------TTTCAC--------------------GGCG-CGCCT-CGAGCAGGACTCTTTG-------------
         erecta  ATTTCGCGCACTGATTCTAAAAAATGAAATCA-TTTTTTCTTGAA---------TTTCAC--------------------GGCG-CGTCT-CGAGCAGGACTCTTTG-------------
      ananassae  AATCCGCGCACTGATTCTAAAAAATGGAATAATTTTTTTCTCGAA---------TTTCTG--------------------GGCG-CGCCTGCGAGCAGGACTCTTTG-------------
  pseudoobscura  ATTTCGCGAACTGATTCTAAAAAATGAAATCA-TTTTTTCTCGAA---------TTTCGC--------------------AGAGACGACT-GTGTAAAGGCTCTTTG-------------
     persimilis  ATTTCGCGAACTGATTCTAAAAAATGAAATCA-TTTTTTCTCGAA---------TTTCGC--------------------AGAGACGACT-GTGTAAAGGCTCTTTG-------------
        virilis  GATTCGCGCACTGATTCTAAAAAATGAAAACA-GTTTTTATGAATT--------TCTCAC--------------------AACG-CGCCT-CGACT---GCGACTTG-------------
     mojavensis  AGTTCGCGCACTGATTCTAAAAAATGAAAACA-GTTTTTATGAATTCTCTGGTCTCTGAC---------------------TCG-GACTC-TGGCC---GCA--TTGTTC---AATGTGC
      grimshawi  GATTCGCGCACTGATTCTAAAAAATGAAATCA-GTTTTTATGAAAT--------TTTCACGTGGCGGCGGCTCGTTCAGCAACG-ATCCT-TGGTTCGAGCGTATTGTTTTTGAATGTGC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTCTCGGCCAGGCAATTGTCCTTTTTTG--CGCTCAGCT----CTCAGTTT-----TTTCGTCC--AG-----------CGGGCA---TTACC--------TACA-C------------G
       simulans  TTCTCGGCCAGGCATTTGTCCTTTTTTG--CGCTCGGCT----CTCAGTTT-----TTTCGGCC--AG-----------CGGGCA---TTACC--------TACA-T------------G
      sechellia  TTCTCGGCCAGGCAATTGTCCTTTTTTG--CGCTCGGCT----CTCAGTTT-----TTTCGGCC--AG-----------CGGGCA---TTACC--------TACA-T------------G
         yakuba  TTTTCGGCCGGGCAGTTGTCCTTTTTTG--CGCTCGGCT----CTCAGTTT-----TTTCGGCC--AG-----------CGGGCA---TTACC--------TACA-C------------G
         erecta  TTTTCGTTTGGGCAATTGTCCTTTTTTG--CGCTCGGCT----CTCAGTTTTTTCATTTCGGCC--AG-----------CGGGCA---TTACCTATGGGTATACA-C------------G
      ananassae  TTAGCCGAGCGTCCCTTGTCCTTTTTTG--CAATAGTCC----TT---TTT-----TGCCGTC----G-----------AGAGTG---TTACC--------TAGGCC------------G
  pseudoobscura  TCCTGGACCAG-TGCTCGTCCTTTTTTGCACACTCGGCA----TCGTTTCT-----TTTTCCCC--CG--CTT------CGAGTG---CTACC--------TAGG-C-------CTCCGG
     persimilis  TCCTGGACCAG-TGCTCGTCCTTTTTTGCACACTCGGCA----TCGTTTTT-----TTTCCCCC--CG--CTT------CGAGTG---CTACC--------TAGG-C-------CTCCGG
        virilis  GCCTGTTCCTGTGCGTTGTCCTTTTTCG--C---CGTTTTCTACTATTTTC-----TTGTTGTT--GTTTTTT------TTTGCCTTTTTACC--------TAGC-CGAGTCGAGCCTGG
     mojavensis  GCCTGATCCTGCGCGTTGTCCCTTTTCG--CATACATTT----CTATTTTT-----TGTCCGCTCGCCTCTTC------GCTGGATTTTTACC--------TAGC-C-------------
      grimshawi  GCCTTATCCTGGCCAATGTCCTTTTTCG--C---ATTTT----CTGTGTTT-----TTTCTTCT--TTTTTTTTTGTCGTTTGCCTTTTTACC--------TAGC---------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GCGTTTTATGGCGGA------------GATGATAT----------TCGCCTGGGAT--------CG------------GTTCCGTTTTTTAGGCCATAAAAATTAGGCGGCATAAAAAAA
       simulans  GCGTTTTATGGCGGA------------GATGATAT----------TCGCCTGGGAT--------CG------------GTTCCGTTTTTTAGGCCATAAAAATTAGGCGGCATAAAAAAA
      sechellia  TCGTTATATGGCGGA------------GATGATAT----------TCGCCTGGGAT--------CG------------GTTCCGTCTTTTAGGCCATATAAATGACGCGGCAT-ATATAA
         yakuba  GCGTTTTATGGCGGA------------GATGATAT----------TCGCCAGGGAT--------CG------------GTTCCGTTTTTTAGGCCATAAAAATTAGGCGGCATAAAAAAA
         erecta  GCGTTTTATGGCGGA------------GATGATAT----------TCGCCTGGGAT--------CG------------GTTCCGTTTTTTAGGCCATAAAAATTAGGCGGCATAAAAAAA
      ananassae  GTGGTTTATGGCCAA------------GATGATAC----------TTGGTC---------------------------GTTCCGTTTTTTAGGCCATAAAAATTAGGCAGCATAAAAAAA
  pseudoobscura  GGTTTTTATGACGGA------------GATGATATTCTGTGAGGCTCGGCTCGGCT--------CGGCTCTCGGTGCTGTTCCGTTTTTTAGGCCATAAAAATTAGGCGGCATAAAAAAA
     persimilis  GGTTTTTATGACGGA------------GATGATATTCTGTGAGGCTCGGCTAGGCT--------CGGCTCTCGGTGCTGTTCCGTTTTTTAGGCCATAAAAATTAGGCGGCATAAAAAAA
        virilis  CTCTTTTATGGGCAAACAAATGGCAGCGATTATAT----------TCGGTTTCGGTTTT-----TG------------GTTCTGTTTTTTAGGCCATAAAAATTAGGCGGCATAAAAAAA
     mojavensis  CTCTTTTATGGCCAAACAAATGGCAGCGATTATAT----------TCGGTTTCGGTTTC-----TG------------GCTCTGTTTTTTAGGCCATAAAAATTAGGCGGCATAAAAAAA
      grimshawi  GATTTTTATGGGCAAACAAATGGCAGCGATTATAT----------TCGGTTTCAGTTTCGGTTTCG------------GTTCTGTTTTTTAGGCCATAAAAATTAGGTGGCATAAAAAAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTGCATTGGAATTCTAGTT-CTAGTTTCAAGTTTTT--------AGGTTTCCAG-GTTTCTGCCAGC------------CCGCCTAGA--TTCGCAT----TT-----------------
       simulans  CTGCATTGGAATTCTAGTT-CTAGTTTCAGGTTTTT--------AGGTTTCCAG-GTTTCTGCCAGC------------CCGCCTAGA--TTCGCAT----TT-----------------
      sechellia  CTGCATTGCAATTCTAGGTACTAGTCTCA-GTTCTG--------ATGTTTCCAG-GTTTCTGCCAGC------------CCGCCTAGA--TTCGCAT----TT-----------------
         yakuba  CTGCATTGGAATTCTAGTT-CTAGTTTCAGGTTTTT--------AGGTTTCCAG-GTTTCCGACAGC------------CCGGAAAGA--TTCGCAA----TT-----------------
         erecta  CTGCATTGGAATTCTAGTT-CTAGTTTCAGGTTTTTAGGTTTTCAGGTTTTCAG-GTTTCTGCCAGC------------CCGGATAGA--TTCGCAT----TT-----------------
      ananassae  CTGCATTGGAATTCTAGTT-CTAGTTTCAGATTTTT--------AGGTTTC------------CAGC------------CCGGCGAAAATTTCGCAT----TT-----------------
  pseudoobscura  CTGCATTGGAATTCTAGTT-CTAGTTTCAGATTTTT--------AGGTTTCCAGAGTTTTTCGGACT------------TTGGGCAGA--TTTTTATGAAATT-----------------
     persimilis  CTGCATTGGAATTCTAGTT-CTAGTTTCAGATTTTT--------AGGTTTCCAGAGTTTTTCGGACT------------TTGGGCAGA--TTTTTATGAAATT-----------------
        virilis  CTGCATTGGAATTCTAGTT-CTAGTTTCAGATTTTT--------AGGTTTTCAG-GCTT---CGCGTTGCTGTTTTCTATTTACAATT--TTTGTTT----TT------------TTTTT
     mojavensis  CTGCATTGGAATTCTAGTT-CTAGTTTCAGATTTTT--------AGATTTTTAG-GTTTTTGCACATTTCCTTTTCTAGTTTTCTATA--TTTGTGT----TTTTATTTTTTGTATTTTT
      grimshawi  CTGCATTGGAATTCTAGTT-CTAGTTTCAGATTTTT--------AGGTTTTCAG-ATTTT--CAGGT------------TTTGCAGTG--CAGATTT----TT------------TTCAT
        Summary  BBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------------CGCGGAA-TTCGGAAGCGGAA--CAGAAT-GC---------CAGAATGGTCAGA----------ATCC---------TGGC----------------TGACCTTGCCT
       simulans  ------------CGCGGAA-TTCGGAAGCGGAA--CAGAAT-GC---------CAGAATGGACAGA----------ATCC---------TGGC----------------TGACCTTGCCT
      sechellia  ------------CGCGGAA-TTCGGAAGCGGAA--CAGAAT-GC---------CAGAATGGACAGA----------ATCC---------TGGC----------------TGACCTTGCCT
         yakuba  ------------CGCGGAA-TTCGGAAGCGGAA--CA---------------------------------------ATCC---------TGGC----------------CGACCTTGCCT
         erecta  ------------CGCGGAA-TTCGGAAGCGGAA--CAGAATGGC---------CAGAATGGCCAGAATGGACGGGCATCC---------TGGC----------------TGACCTTGCCT
      ananassae  ------------CGCGGAA-TTCGGAAGCGGAA--CAGATC-CC---------GATCCT-----------------GTCC---------TGACCGAAATAAAAAAGGCATGACCTTGCCC
  pseudoobscura  ------------CGCGGAA-TTCGGAAGCAAAATGCGGAAT-GCGGAACGGAACAGAATGGCAAAT----------ATCCGATATTCCGGGGC----------------TGACCTTGCCT
     persimilis  ------------CGCGGAA-TTCGGAAGCAAAATGCGGAAT-GCGGAACGGAACAGAATGGCAAAT----------ATCCGATATTCCGGGGC----------------TGACCTTGCCG
        virilis  TTTTTAAATTTTCGCGGAA-TTCGGAAGCGGAA--CA--AC-GA-----------------------------------C---------GGCC----------------CGACCTTGCCG
     mojavensis  TTTTTTAGAATTCGCAGAATTTCGGAAGCGGAA----------------------------------------------------------------------------CGACCTTGTCG
      grimshawi  ATTTT----TTTCGCCGAA-TTCGGAAGCGGAA--CA--AC-GA--------------------------------TCCT---------TGAC----------------TGACCTTGTCA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTT-------------GGCC-------AGGGGCCGTAAAAAAATTGACTCGCTGCGGTGCGCGGAA--TATTTTTT-AAATCTGACTTT------------------------CCAA---
       simulans  TTT-------------GGCC-------AGGGGCCGTAAAAAAATTGACTCGCTGCGGTGCGCGGAA--TATTTTTT-AAATCTGACTTT------------------------CCAA---
      sechellia  TTT-------------GGCC-------AGGGGCCGTAAAAAAATTGACTCGCTGCGGTGCGCGGAA--TATTTTTT-AAATCTGACTTT------------------------CCAA---
         yakuba  TTT-------------GGCC-------AGGGGCCGTAAAAAAATTGACTCGCTGCGGTGCGCGGAA--TATTTTTT-AAATCTGACTTT------------------------CCAA---
         erecta  TTT-------------GGCC------AAGGGGCCGTAAAAAAATTGACTCGCTGCGGTGCGCGGAA--TATTTTTTAAAATCTGACTTT------------------------CCAA---
      ananassae  TCT-------------GGCC------GGAGGGCCGTAAAAAAATTGACTCGCTGCGGTGCGCGGAATGTATTTTTT-AGAACTGACTCG------------------------GCGA---
  pseudoobscura  TCTTCTCCGCCTTCTTCTCT-------GAGGGCCGTAAAAAAATTGACTCGCTGCGGTGCGGTGGA--TATTTTTT-AGAAATGACTTTTTCTGC--------AGCCTCCTTGCCGATCG
     persimilis  TCTTCTCCGC------CTCT-------GAGGGCCGTAAAAAAATTGACTCGCTGCGGTGCGGTGGA--TATTTTTT-AGAAATGACTTTTTCTGCAGCCTCCTAGCCTCCTTGCCGATCC
        virilis  TCT-CTGAAG------AGCTATTCAAAGCGAAACATTTGGAAATTGACTCGCTGCGGTGCGCGAAA--TATTTTTT-AGAACTGACTTT--------------------CGAATCGT---
     mojavensis  C----------------GCT------------------------------GCAGCGGTGCGCGAAA--TATTTTTTAAGAACTGACTTT------------------------TCGT---
      grimshawi  AATAATAAAC------AACA-------------------AAAATTGACTCGCTGCGGTGCGCGAAA--TATTTTTT-AGAACTGACTT-------------------------TCGT---
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------CAAT-CTC----TGATCTGGGTT------------CGAATCGT-AAAAAAAAAGCAGAACA---AA---AAGCGGGCATTT------TCGTCGGCAA-----ATGATCTGTTAA
       simulans  ------CAAT-C-C----TGATCTGGGTT------------TGAATCGTAAAAAAAAATGCAGAACA---AA---AAGCGGGCATTT------TCGACTGCAA-----ATGATCTGTTAA
      sechellia  ------CAAT-C-C----TGATCTGGGTT------------CGAATCGT-AAAAAAAATGCAGAACA---AA---AAGCGGGCATTT------TCGACAGCAA-----ATGATCTGTTAA
         yakuba  ------CAAT-C-C----TGATCTGGGTTCGAATCTCGGTCCGAATCGT-AAAAAA---GCAGAACA---AA---AAGCGGGCATTT------TCGCCTGCAA-----ATGATCTGTTAA
         erecta  ------CAATCC-C----TGATCTGGGTT------------CGAATCGT-AAAAAA---GCAGAACA---AAACCAAGCGGCCATTCGGGCAATCGGCTGCAA-----ATGAGCCGTTAA
      ananassae  -----------A-C----TGATCTG-------------------ATCGT-AAAAAA---GCAAAACG---AC-----------------------------AA-----ATGATATCTTTA
  pseudoobscura  CGATCCCGAT-T-C----TGATCCTGGCC------------TGAATCGT-AAAAAAA--GAAGAGCGTACAA---AGGCGGAAATGG------CACTCAACAAAAAATATGATCTTTTTA
     persimilis  CGATCCCGAC-T-C----TGATCCTGGCC------------TGAATCGT-AAAAAAA--GAAGAGCGTACAA---AGGCGGAAATGG------CACTCAACAAAAAATATGATCTTTTTA
        virilis  --ATGTCAAT-T-GTCTCTGATCTGAGCT--------------GATCAT-AAAAAA-----AAAGCA---GA---AAA---------------ACGATCGGGC-----ATGATTTTTTTA
     mojavensis  AAATGTCAAT-T-G----TGATCGCAGCT--------------CATCAT-AAAAAA-----AGATCA---AACCGAAA---------------GTCTCTAGAA-----ATGATTTTTTTA
      grimshawi  AAATGTCAAT-T-G----TGATCTGAGCT--------------CATCAT-AAAAAA-----AGATCA---AT---ATACC-------------GTTGCCAGAA-----ATGATTTTTTTA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGGGC------CGGGCTAAAAAACTAAGTCAC-------------------AAAGTCACA------AGGTTG------------TCCGGTAAATTGACC---------CGGTTAAGAATG
       simulans  TGGGC------CGGGCTAAAAAACT---------------------------AAGTCACA------AGGTTG------------TCCGGGAAACTGACC---------CGGTTAAGAATG
      sechellia  TGGGC------CGGGCTAAAAAACTAAGTCAC-------------------AAAGTCACA------AGGTTG------------TCCGGGAAATTGACC---------CGGTTAAGAATG
         yakuba  TGGCCCAAAAACGGGCTAAAAAACTAAGTCAC-------------------AAAGTCACA------AGGTTGCAAGGTT----GTCCGGCAAATCGACC---------GGGTTAAGGATG
         erecta  TGGGCCAAAAACGGGCTAAAAAACTAAGTCAC-------------------AAAGTCACA------AGGTTGT-----------CCGGGAAAACTGACC---------CGGTTAAGGA--
      ananassae  TGGTCCAA---AGGACCAAAAAACTAAGTCAC-------------------AAAGTCACA------AGGTTA------------TCCTGGAAATTGATCCCTGACTGACGTTAAAGGATG
  pseudoobscura  TGGGCCC----ATCGCTAAAAAAGTAAGTCAC-------------------AAAGTCGC------------------TTTCCCTTCTCTGTCACTGACT---------TCG--AAGGAAG
     persimilis  TGGGCCC----ATCGCTAAAAAAGTAAGTCAC-------------------AAAGTCGC-------------------------------------------------------------
        virilis  TTAT-------TGGCCTAAAAAACTAAGACGC----------------------------------------------------------------------------------------
     mojavensis  TTAT-------TGACCTAAAAAACTAAG------------------------AAGTCGAACAATGCGAACGG------------CCCAAAAAGTCAGCC---------AGGCCTAGAAGG
      grimshawi  TTAT-------TGGCCTAAAAAAGTAAAACGTTAAACAATGCAATGGCCAAAAAGTC--ACTACGAAGACGG------------CCTGGAAA----------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------------------------------------------TCTGTCTG--TACCGAGAAGGATGCAGGACATT-------CAGCACTTCAAAGCTCCCACCGC--TCGAA--G---
       simulans  --------------------------------------------TCTGTCTG--TACCGAGAAGGACGCAGAACACT-------CAGCACTTCAAAGCTCCCACCGC--CCGAA--G---
      sechellia  --------------------------------------------TCTGTCTG--TACCGAGAAGGACGCAGGACACT-------CAGCACTTCAAAGCTCCCATCGC--CCGAA--G---
         yakuba  --------------------------------------------TGTGTGTG--TACCGAGAAGGACGCAGGACACT-------CAGCACTTCAAAGCTTCCAGCGC--CCGAA--G---
         erecta  --------------------------------------------TGTGCATG--TACCGAGAAGAGCGCAGGACACT-------CCGCACTTCAAAGCTCCCAGTGC--CCGAC--G---
      ananassae  C-----------------------------------GGCAGAGTTCTGATAG--TACGGCGAAATCCGCAGGACTCCATCTCCGTGGCAGTTCAAAGCTCCTGCCGC--CCAAATTG---
  pseudoobscura  CCGCTTCTCTCTCGCTCCCTCGCTGGCATCGGGAAGAGCAGAGATCTG------TACGGGGAAAGCCGCAGGACTCTA------TTCCACATCAAAGCTCTATGCGCCGCCGCA--GCTT
     persimilis  ------------------------------------------------------TACGGGGAAAGCCGCAGGACTCTA------TTCCACATCAAAGCTCTCTGCGCCGCCGCA--GCTT
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  --------------------------------------------CGAACGTTAA-----AGCAGAGTAAAGTGTGAT-------TTACACATTA---CTTACAAGGC--TAGCA--A---
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --GATTCCCCCGAAGATTCACACGGCTGGCGGG-----GGGGATCAACGTTTGATCAG----AAACCGCCGGCGGCTGTTAACGGCCACAAAAAGCAAGTGACATGCAAATTAGGCAGAT
       simulans  --GATTCCCCCGAAGATTCACACGGCTGGCGGG-----GGGGATCACCGTTTGATCAG----AAACCGCCGTC----GTTAACGGCCACAAAAAGCAAGTGACATGCAAATTAGCCAGAT
      sechellia  --GATTCCCCCGAAGATTCACACGGCTGGCGGG-----GGGGATCACCGTTTGATCAG----AAACCGCCGTC----GTTAACGGCGACAAAAAGCAAGTGACATGCAAATTAGCCAGAT
         yakuba  --GATTCCCCCGAAAACTCACCCGGCTGGC--------GGGGATCCCCGTGTGATCAA----AAACCGCCGGC---TGCTAACGGCCACAAAAAGCAAGTGACATGCAAATTAGGCGGAT
         erecta  --GATTCCACCGAAGATTCACACGGCTGGC--------GGGGATGCCCGTTTGATCCA----AACCCGCCGCC---TGTTAATGGCCACAAAAAGCAAGTGACATGCAAATTATACGGAT
      ananassae  --GATTTTCTCCAAAACACGCACGCCCGTG--------GGAGATCCTCCTTTG---------AAGCCGACCGC----------------------CGGGTGACATGCAAATTAACTGCCC
  pseudoobscura  CAGCTTCCACGGAAGATTCACACGATTAGC--G-----GCATTTTCACGTTTG-------------------------------------AAACGGACATGCCATGCAAATTATCCGAAT
     persimilis  CAGCTTCCACGGAAGATTCACACGATTAGC--G-----GCATTTTCACGTTTG-------------------------------------AAACGGACATGCCATGCAAATTATCCGAAT
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  --------------AATCAATGTGGCTAACGGGGCAATGGGAATTAACTTCTGGCCGGGTCAACACTGAAGAC-----------------GAAAGAGAGTG------AAAATCGACAGTT
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TACTGC----TGGCCAGCAA---GGTCAGGCCGCCCTTAATGGGCGTGACCGCTGGATCTACCTCCCTCCCCACCCCTGCCCTTCAACGGCAA-AGGAACCGA-----CAACGGCA-GCA
       simulans  TAATGG----TGGCCAGCAA---GGTCAGGCCGCCCTTAATGGGCGTGACCGCTGGATCTCCCTCCCTTCCCTCCCCACCCTCACAACGGCAA-AGGAACCGC-----CAACGGCA-GCA
      sechellia  TAATGG----TGGCCAGCAA---GGTCAGGCCGCCCTTAATGGGTGTGACCGCTGGATCTCCCTCCCTTCCCTCCCCTCCCTCTCAACGGCAA-AGGAACCGC-----CAACGGCA-GCA
         yakuba  TACCAGCAAGCGGGCAGCAA---GGTCAGGCCGCCCCTAATGGGCGTGACCGCTGGATCTCCCTCCCCTCCC-----------TAATCGGCAA-AGGTACCGC-----CAACGGCA-GCA
         erecta  TA--------TGGATAGCAA---GGTCAGGCCGAACTTAATGGGCGTGACCGCTGGATCTCCCTCCCCTCCT-----------TAATCGGCAA-AGGAACCGC-----CAACGGCA-GCA
      ananassae  TAA-------TTTGCGGCAA---GGTCTGACC-----TTGTGGCAGGATGCTCTGGCACCTTCCCCACCCCC-------------------------ATCCGC-----CAACGGCA-GCA
  pseudoobscura  TAATTC----CGGCCAGT-----GGTCATGCC--CATTAGGGAGT-------CGAGTCCCCCCTCCCCTCCG-------CCCACCAGCAGCAGCAGCAACCACTGCTGCAGCCACAGGCA
     persimilis  TAATTC----CGGCCAGT-----GGTCATGCC--CATTAGGGAGT-------CGAGTCCCCCCTCCCCTCCG-------CCCACCAGCAGCAGCAGCAACCACTGCTGCAGCCACAGGCA
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  TATGGC----AGAGTAAAGAAGCGGGGAGGTAAATATCTATATGTGCTTGAGCTGAGTCT------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ATACGATCACCA--C------AACCACCGATCGATCGATCGAGTGACCTTCGACCTG------------CCGC-ATTGTTATCTGCGTGC-TGCGATTTTTTCTTCATTTTTCACAGGCC
       simulans  GTACCATCACCA--C------AACCACCGATCGATCGATCGAGTGACCTTCGACCTG------------CCGC-ATTGTTATCTGCGTGC-TGCGATTTTTTCTTCATTTTTCACAGGCC
      sechellia  GTACCATCACCA--C------AACCACCGATCGATCGATCGAGTGACCTTCGACCTG------------CCGC-ATTGTTATCTGCGTGC-TGCGATTTTTTCTTCATTTTTCACAGGCC
         yakuba  GTGCCACCACCA--C--------------AACCACCGATCGAGTGACCTTCGACCTG------------CCGC-ATTGTTATCTGCGCGC-AGCGATTTTTTCTTCTTTTTTCACAGGCC
         erecta  GCACCACCACCA--CCACCAGCACCACCAAACCACCGATCGAGTGACCTTCGACCTG------------CCGC-ATTGTTATCTGCGTGC-AGCGATTTTTTCTTCTTTTTTCACAGGCC
      ananassae  CCACCACAATCGGCC------TACTGCCATTCCG-AGGGCGAGTGACCTTCA--CTA------------CTCA-AT--------------------TTTTTCCATCTTTTTTCACAGGCT
  pseudoobscura  CTGCCACTGCCA--C------TGCCATCAGTCA--CTGCCGCATGACCTTCAGATCG------------T-----TTATTGTCCCTG---------ATTTTGCTTATTTTTTCACAGGCA
     persimilis  CTGCCACTGCCA--C------TGCCATCAGTCA--CTGCCGCATGACCTTCAGATCG------------T-----TTATTGTCCCTG---------ATTTTGCTTATTTTTTCACAGGCA
        virilis  ------------------------------------------GTGACCTTCGACCTTTTATAGTTGCTGTTGTTGCTGCTGCTGCTGCTACTCTTCTTTATGCACATTTTTTCACAGGCA
     mojavensis  ------------------------------------------GTGACCTTCAACCTT------------TTGTTGTTGTCGTTTCTGGTCGTCTTCTTTAG--ATATTTTTTCACAGGCC
      grimshawi  ------------------------------------------GTGACCTTCGACCTT------------TTATTGTCGTTGTTGCTT----------------GCATTTTTTCACAGGCA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBB

                 
   melanogaster  ATTT---GCGTGCGCTCCTGCTGT--------CCTTG-------------GTGTGT-CCTTTCAGCATGCGTGTCCTTTTT--A-------GCATGCTAAAAATCAAGCGATCAAGAATC
       simulans  ATTT---GCGCGCGCTCCTGCTGT--------CCTTG-------------GTGTGT-CCTTTTAGCATGCGTGTCCTTTTT--A-------GCATGCTAAAAATCAAGCGATCGACAATC
      sechellia  ATTT---GCGTGCGCTCCTGCTGT--------CCTTC-------------GTGTGT-CCTTTTAGCATGCGTGTCCTTTTT--A-------GCATGCTAAAAATCAAGCAATCGACAATC
         yakuba  ATTT---GCGAGCGCTCCTGCTGT--------CCTTG---------------GTGT-CCTTTTAGCATGCGTGTCCTTTTT--A-------GCATGCTAAAAATCAAGCGATCGAAAATC
         erecta  ATTT---GCGTGCGCTCCTGCTGT--------CCTTG---------------GTGT-CCTTTTAGCATGCGTGTCCTTTTT--A-------GCATGCTAAAAATCATGCGATCGAATATC
      ananassae  ATTG---CC--GCACTGCTGCTGT--------CCGTC-----------------GT-CCTGCCCGT-----TGTCCTTTTT--A-------GCATAGCAAAAA--------------ATC
  pseudoobscura  ATTT---GCGCCTGCTTCTGATGT--------CCCTC--TCGCTCTCCGTTTGTGTGCCTGTTGTCGGTCGTGTCCTTTTT--AGCATTTGGCATGCTAAAA---------------ATC
     persimilis  ATTT---GCGCCTGCTTCTGATGT--------CCCTC--TCGCTCTCCGTTTGTGTGCCTGTTGTCGGTCGTGTCCTTTTT--AGCATTTGGCATGCTAAAA---------------ATC
        virilis  ATTTCGGTCTGCCGTTGCGGCTGC--------CTGTC----------------CGG-CCTGTTCGCGCCTGTGTCCTTTTTTGA-------GGATGCTAAAAATC---------------
     mojavensis  ATTTCATGCCGCTGCTCCTGCTGCTGCTGCTGCTGCCGTTGTTGTTGTTGTTGCTG-CCTGTTCGTCGTGTCGTCCTTTTTTGA-------GCATGCTAAAAATC---------------
      grimshawi  ACTTTTGACTTCTGCTGCTGCTGTTGCTGGTGTTGCC--------------TGTTG-CCTGTTT-TGCGGCTGTCCTTTTT--A-------GGCTGCTAAAAATC---------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGCGCGATCTTAGCCGGAATC------G----GGATTAG-TC--G-TTTATGGCC-------CACGC-----------CCTCAATC-------C--TCCATAAAACACTAAGCGCTTTCG
       simulans  TGCGCGATCTTAGCCGGAATC------G----GGATTAG-TC--G-TTTATGGCC-------CACGC-----------CCTCAATC-------C--TCCATAAAACACTAAGCGCTTTCG
      sechellia  TGCGCGATCTTAGCCGGAATC------G----GGATTAG-TC--G-TTTATGGCC-------CACGC-----------CCTCAATC-------C--TCCATAAAACACTAAGCGCTTTCG
         yakuba  TGCGCGATCTTAGCCGGAATT------G----GGATTAG-TC--G-TTTATGGCC-------CACGC-----------CTTCAATCCATAAAAC--TCCATAAAACACTAAGCGCTTT-G
         erecta  TGCGCGATCTTAGCCGGAATT------G----GGATTAG-TC--G-TTTATGGCC-------CACGC-----------CTTCAATC-------C--TCCATAAAACACTAAGCGCTTTCG
      ananassae  TTAGCGATCTTAGCCGGAATC------GAAGTGGATTAG-GCCAG-TTTATGGCC-------CACGC-----------CCTCAATC-------C--TCCATAAAACACTAAGCGCTTC-G
  pseudoobscura  TGCGCGATCTTAGCCGGAATCCG-AGTG----GGATTAGAGC--G-TTTATGGCCCTTAGAGCACGCCCTCGTCCCGGCCTCAATC-------C--TCCATAAAACACTAAGCGCTTTCC
     persimilis  TGCGCGATCTTAGCCGGAATCCG-AGTG----GGATTAGAGC--G-TTTATGGCCTTTAGAGCACGCCCTCGTCCCGGCCTCAATC-------C--TCCATAAAACACTAAGCGCTTTCC
        virilis  -GCGACATCTTAGCCAGAATTTTTGGCC----GGATTAA-GC--ATTTTATGG---------CCAGC--------------AAATG-------CTGTCAATAAAACGCTAAGCGCTTCCC
     mojavensis  -GCGACATTTTATCCAGAATTTCTGGCC----GGATTAA-GC--ATTTTATGA----------CGGC--------------AAATG-------CTGTCAATAAAACGCTAAGCGCTTTCC
      grimshawi  -GCAACATCTTAGCCAGAATTTCAGGCC----GGATTAG-GC--ATTTTATGGTATTCGCGCCGAGC-----------CCAAAATG-------CAGGCAATAAAACGCTAAGCGCTTTCC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CCTA----ATGTA-T--GTATCT-CTTCATATCTGGAA-------ATCTCACTATGGGTGTGGGTG---------------TGGGTATCTGTATCTG--------TATCTATATCTGTTG
       simulans  CCTA----ATGTA-T--GTATCT-CCTGATATCTGGAA-------ATCTCACTATGGGTATGG---------------------------GTATCTG--------TATCTGTTTCTGTTG
      sechellia  CCTA----ATGTA-T--GTATCT-CCTGATATCTGGAA-------ATCTCACTATGGGTATGG---------------------------GTATCTG--------TATCTGTTTCTGTTG
         yakuba  CCTAATGTATGTA-T--GTATCT-CTTGATATCTGGAA-------ATCTCACTATCTCAATATGTGGCTAT----------TTGGTATCTGTATCTGT-------TA-CTGTTGCTGTTG
         erecta  CCCAATGTATGTA-T--GTATCT-CTTGATATCTCGAATATGTGGGTATCGGTATCTGTATCTGTATCTGTACC-------TCTGTATCTGTATCTGTATCGCTGTATCTGTTGCTG-TG
      ananassae  ACTA----ATGCACT--GCATTC-CAAAATGTATCTGT-------ATCTCTGCATCTGCGCTGTTGCGTGA-------------------GTATTGG--------TAAGTTTTTTTAATA
  pseudoobscura  CCTA----ATGCA-T--CTTTTA-GATGCTGTATCTG-----------------------------------------------------------------------------------
     persimilis  CCTA----ATGCA-T--CTTTTA-GATGCTGTATCTG-----------------------------------------------------------------------------------
        virilis  ACTA----ATCTC-C--AACCGT-AGACGTATCCTTAGCC-----ATATCTGTATCTGTATCTGTATCT---------------------GTATCTG--------TATCTCT--------
     mojavensis  GCTA----ATCCC-CCAAACTGTAAAATCTAGCTTCGTCT-----GTATCTGTATCTGTATCTGTATCT---------------------GTATCTG--------TATCTGT--------
      grimshawi  GCTA----ATCTC-C--AACTGT-AAATGTATCTTCAA-------ATTTCTATATCTGCATTTTTATTTAATGAACACCAAATTTCAGCAGCGTTTC--------TATCGAC--------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTGT--GATGAATAAAT-----------AACTTCTTA-ATGGGAT-----------------GCTGCTCAAAATGG------------CTCCCACTC------------AT-CCCCATTG
       simulans  CTGT--GATGAATAAAC-----------AACTTCTTA-ATGGGAT-----------------GCTGCTCAAAATGG------------CTCCCACTC------------AT-CCCCATTG
      sechellia  CTGT--GATGAATAAAC-----------AACTTCTTA-ATGGGAT-----------------GCTGCTCAAAATGG------------CTCCCACTC------------AT-CCCCATTG
         yakuba  CTGT--GATGAATAAAC-----------AACTTCTAA-ATGCGAT-----------------GCCGCTCAAAATGG------------AGCCCACTC------------ATCCCCCATTG
         erecta  CTGT--GATGGATAAAC-----------AACTTCTTA-ATGCGAT-----------------GCGGCTCAAAATGG------------CTCCCACTC------------AT-CCCCATTG
      ananassae  GAGT------------------------------------------------------------------------------------TTTCCATTC------------AT-CCCCATTG
  pseudoobscura  ------------TAAAC-----------AACTTTTTA-ATAGAGC-----------------ATTCCACAAGATGG------------CTCCCATCC---------------CCCCATTG
     persimilis  ------------TAAAC-----------AACTTTTTA-ATAGAGC-----------------ATTCCACAAGATGG------------CTCCCATCC---------------CCCTATTG
        virilis  ----TGGA--CATGTATCTGCCGCTTTAAATTTTGTATATTTGGTGTGTTTATTTTTTTTTTAATGCACCCAGCAGCC-TCCCCCCGCCCTCTCCCCCTCGACAGCCACGC-CGCAGCTG
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ----AAAA--AATAAAT-----------AAATAAATAAATAAA-------------------AATCCGCCAAGCAGCTGGCATTTAAATGTCTGTTCCGGAACTGAGCAAC-CAAAAATA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GCGGCTG--------GGAGAG----TCGTTG----GGCAT----CCGGAA---GCGGGGGCAGCCAAAAATAT--ACCCACATCCCATGG-A---TGCCATCAATTAGCATACAATTAAA
       simulans  GCGGCTG--------GGAGAG----TCGTTG----GGCAT----CCGGAA---GCGGGGGCAGCCAAAAATAT--ACCCACATCCCATGG-A---TGCCATCAATTAGCATACAATTAAA
      sechellia  GCGGCTG--------GGAGAG----TCGTTG----GGCAT----CCGGAA---GCGGGGGCAGCCAAAAATAT--ACCCACATCCCATGG-A---TGCCATCAATTAGCATACAATTAAA
         yakuba  GCAGCTA--------GGAGAC----TCGATG----GGCAT----CCGGAA---GCGGGGGAAGCCAAAAATAT--ACCCACATCCCATGG-A---GGCCATCAATTAGCATACAATTAAA
         erecta  GCAGCTATGGGCATTGGAGAC----TCGATG----GGCAT----CCGGAA---GC-GGGGAAGCCAAAAATATACACACACATCCCATGG-A---TGCCATCAATTAGCATACAATTAAA
      ananassae  GCAGCTG--------GGAAAG----TGGCAGCAACAGCAG----CCGGAA---CTGCTGCGCTCCAAAAATAT----------CCAATGG-A---TGCCATCAATTAGCATACAATTAAA
  pseudoobscura  GCAGTTG--------GCAG----------TT----GGCAG----CTGGGAAATGCATCCGGATCCAGAAATAT-----CCCATCCCATGG-AAGCAGCCATCAATTAGCATACAATTAAA
     persimilis  GCAGTTG--------GCAG----------TT----GGCAG----CTGGGAAATGCATCCGGATCCAGAAATAT-----CCCATCCCATGG-AAGCAGCCATCAATTAGCATACAATTAAA
        virilis  GCATTTG--------AAATGC----CATCAG----AATATGGTTCCGGAA---CTGTGCGC---CAAATATAG---TACAAGTATCTTTGAA---TGCAATCAATTAGCATACAATTAAA
     mojavensis  -------------------------------------------------------------------------------------------A---TGCAATCAATTAGCATACAATTAAA
      grimshawi  GTATCTG--------AGTAGCTGAGTAGCTG----AGTAT-CTTGTGGAT---GCGTTTGC---------TGC---CACTGCTGCCATTGAA---TGCAATCAATTAGCATACAATTAAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAATGCTTAAACAGGGAAATCGTCTTGGGA-------TGCGAG--------------------------------------TGGTTCGG------CCGCAGAT------GCAGCCGCAGC
       simulans  AAATGCTTAAACAGGGAAATCGACTTGGGA-------TGCGAG--------------------------------------TGGTTCGG------CCGCAGAT------GCAGCCGCAGC
      sechellia  AAATGCTTAAACAGGGAAATCGACTTGGGA-------TGCGAG--------------------------------------TGGTTCGG------CCGCAGAT------GCAGCCGCAGA
         yakuba  AAATGCTTAAACAGGGAAATCGACTTGGGA-------TGCGAG--------------------------------------TGCTTAGG------CCACAGATGCAGCCGCAGCCGCAAC
         erecta  AAATGCTTAAACAGGGAAATCGACTTGGGA-------TGCGAG--------------------------------------TGGTTCGG------CCACAGAT------GCAGCCGCAAC
      ananassae  AACTGCTTAAATAG-------------------------------------------------------------------TGGTCTGG------CCGCAGAA------GCCGCCAGAGA
  pseudoobscura  GAATGCTTAAACAGGGAAATCAACTTGAAC-------TGCA----------------------------------------TGCGGCAG------ATACATAT------GTATCTGTATC
     persimilis  GAATGCTTAAACAGGGAAATCAACTTGAAC-------TGCA----------------------------------------TGCGGCAG------ATACATAT------GTATCTGTATC
        virilis  AAATGCTTAAACAAGGAAATCAACTCGAGC-------TGCAGACGCACA--------CACAGCCTTATTTGTATCTGTATCTAATGCGGGCGCAACTGTATCT------GTATCTGCATC
     mojavensis  AAATGCTTAAACAAGGAAATCAAC---AGC-------AGCAGATGCACA---------GCAGACTCA---GTCCATGTAGCTGATGTAGAGG---ATGTATCT------GTGGTAGTAGC
      grimshawi  AAATGCTTAAACAAGGAAATCAACTCGAGCGCCCGCAAACAGATGCACAGATACAGATACAGATACAGATGCAGATACA---GATACGGACAC--ACATTGCT------ATGGATGCAGA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AGCATTTGTAT----------CTC--------------CAAGTGG--C---------------GGGCAGCAGATCAAAGCGA
       simulans  CGCATTTGTAT----------CTC--------------CAAGTGG--C---------------GGGCAGCAGATCAAAGCGA
      sechellia  CGCATTTGTAT----------CTC--------------CAAGTGG--C---------------GGGCAGCAGATCAAAGCGA
         yakuba  AGCATTTGTAT----------CTC--------------CAAGTGG--C---------------GGGCAGCAGATCAAAGCGA
         erecta  AGCATTTGTAT----------CTC--------------CAAGTGG--C---------------GGGCAGCAGATCAAAGCGA
      ananassae  CACAGATACAGATACAGGCCACAC--------------CAAGTGG--CTTCCACAAGAGCGG-GGGGGACAGATCAAAGCGA
  pseudoobscura  TGTATCTGGGA----------CTG--------------TAAGTGG--C--CAACGGCTGCGGCTGGGAGCAGATCAAAGCGA
     persimilis  TGTATCTGTGA----------CTG--------------TAAGTGG--C--CAACGGCTGCGGCTGGGATCAGATCAAAGCGA
        virilis  TGCAACTGTAT----------CTCTGTCTGTGTCTGTGCAGATGC--C--TTGTAAGT-----GGGCCGCAGATCAAAGCGA
     mojavensis  TGCATCTGTAT----------CTC------------TACAGATGC--G--TCGTAAGT------GGTCGCAGATCAAAGCGA
      grimshawi  TACAGTTAGAG----------ATT--------------CAGATGCATG--TTGTAAGT------GGCCGCAGATCAAAGCGA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMRRR


kni