crm
                 
   melanogaster  ACGG-AACTATCCGTT-CAAGGGTCACCAAA--GGGTTCGTGAGGATC------TGGAACGAACACCCGAACTAGGTCACTGGATCG-TTGG----GCACAAAAAACGCACAATGCCGGC
       simulans  ACGG-AACTATCCGCT-CAAGGGTCACCAAAAGGGGTTTGCGAGGATC------AGGAATGGACACCCGAACTAGGTCACTGGATCG-TCGG----ACACAAAAAACGCACAATGCCGGC
      sechellia  ACGG-AACTATCCGCT-CAAGGGTCAGCTAAAGGGGTTTGCGAGGATC------AGGAACGAAAACCCGAACTAGGTCACTGGATCG-ACGG----GCACAAAAAACGCACAATGCTGGC
         yakuba  ACGG-AACTATTCGCTAAAAGGGTCACCAAA--GGGTTGGCGAGGTTC------GGGATCGAACACCCGAACTAGGTCACTGGATCG-TTGG----GCACAAAAAACGCACAATGCGGGC
         erecta  ACGGAAACCATCCGCT-GAAGGGTCACCAAA--GGGTTCGCGAGGATG------AGGATCGAACACCCGAACTAGGTCACTGGATCG-TCGG----GCACAAAAAACGCACAATGCCGGC
      ananassae  --GA-AAAAATA-----CAAGGGTT----AA--GGGTTA--AAGGATCGTTTCTGGGCCAGAACACCCGAACTAGGTCACTAGATCG--CGG----GCACAAAAAACGCACAATGCCGGA
  pseudoobscura  --GT-GATCGTG-----CAGGGGTT----AA--GGGTTA---------------AG----GGACACCCGAACTAGGTCACTGGATCG-CCGC----CAACAAAAAA-----------GGA
     persimilis  --GT-GATCGTG-----CAGGGGTT----AA--GGGTTA---------------AG----GGACACCCGAACTAGGTCACTGGATCG-CCGC----CAACAAAAAA-----------GGA
        virilis  ---------------T------------AAA--GGGT-----------------ATACA-GAACACCCGAACTAGACCAGTCGATCGGTCGGACACACA-AAAAAACGCACAAAGCGGCA
     mojavensis  ---------------T------------AAA--GGCT-------------------------ACACCCGAACTAGATCGCCCGA------------ACA-AAAAAGTGAACAAAGCGCGA
      grimshawi  ---------------T-AA-------TAAAA--GGGTTT-TACGGATC------GTGCT-GAACACCCGAACTAGACCACTCTGTCGATC------ACACAAAAAACACACAATGCGGCA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CAA-TAAAAAAGTAGAGC-GCATCGCAGGACATCATTGTCCTG----ACCGA-AACCCTTTCTCG-GG----------TTTTACGATAC----AGAGC-----------------TGCTT
       simulans  TAA-TAAAAAAGTAGAGC-GCATCGCAGGACATCATTGTCCTG----GCGGA-AACCCTTTCTCG-GG----------TTTTACGATAC----AGAGC-----------------GGCTT
      sechellia  CAA-TAAAAAAGTAGAGC-GCATCGCAGGACATCATTGTCCTG----GCCGA-AACCCTTTCTCG-GG----------TTTTACGATAC----AGAGC-----------------GGCTT
         yakuba  CAA-TAAAAAAGTAGAGC-GCATCCCAGGACATCATTGTCCTG----GCGGACAACCCTTTTTCG-GG----------TTTTACAATGT----CGAGC-----------------GGCTT
         erecta  CAA-TAAAAAAGTAGAGC-GCAGCCCAGGACATCATTGTCCTG----GCGG--AAACCCTTTCCG-AA----------ATTTACGATACAGAGCGAAC-----------------GGCTT
      ananassae  TCA-TAAAAAAGTAGAGC-GTATCCCACGGTGATATTGTCCTGTTTTTTGGA-AACCCTTTTTCGAAG----------TTTTACGATGT----CCTTC-----------------TTTTT
  pseudoobscura  CCA-TAAAAAAGTAGAGC-GCATCCCACAGCGA---------G----GAGGG-AACCCTTTCTGG-AAGCCCTCTGCTCTTTACGATCT----AGAGCATGACGGATCTTCTTTAGGTTT
     persimilis  CCA-TAAAAAAGTAGAGC-GCATCCCACAGCGA---------G----GAGGG-AACCCTTTCTGG-AAGCCCTCTGCTCTTTACGATCT----AGAGCATGACGGATCTTCTTTAGGTTT
        virilis  TCGTTAAAAAAGGAGAGC-GCTGCGTGCTGGGACATTGT--------GCGCG------TTTTTCT-GAACC-------CTTTCCGACTT----GC--C-----------------AGTTT
     mojavensis  TCGTTAAAAAAGGAGAGC-GCTACGTGCTGAGACTTTGT--------GCGTG------TTTT-----------------------GTGT----GC-GT-----------------GGCTT
      grimshawi  TCGTTAAAAAAGGAGAGCGGATACGTGCTGAGATATTGT--------ATGAG------TTTTTGG-GAACC-------CTTTCGGAATT----G---T-----------------ACTTT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---TTTGTGTCCT------------TTTTTTTTTTGG--------AAACTTCTTCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA----------
       simulans  ---TTTGTGTCC---------------TTTTTTTTGG--------AAACTTCTCCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA----------
      sechellia  ---TTTGTGTCC--------------TTTTTTTTTGG--------AAACTTCTCCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA----------
         yakuba  ---TTTGTGTCC-----------------TTTTTTGG--------AAACTTCTGCATAATTGTAGCAAAAAATTAGTGCAC--ATCTTTTGGAATTTACATAGAACGCGA----------
         erecta  ---TTTGTGTCC-----------------TTTTTTGG--------AAACTTCCTCATAATTGTAGCAAAAAATTAGTGCAC--ATC-TTTAGAATTTACATAGAACTCGA----------
      ananassae  ---TGGGTGTCT------------------TTTTGAA--------AATCTTCCCGATAATTGTAGCAAAAAATTAGTGCAAGGAAT-TTGGAAATTTACATAGAACTCGA----------
  pseudoobscura  ATTTTTGTTTTTCTT----T----CTTTTTTTTTTCGTTGGGCATAGTATTCCCGATAATTGTGGCAAAAAATTAGTGCAC--GAC------GATTTACATAGAACTCGACAACTGGCGA
     persimilis  ATATTTGTTTCTCTT----------CTTTTTTTTCGGTTGGGTATAGTATTCCCGATAATTGTGGCAAAAAATTAGTGCAC--GAC------GATTTACATAGAACTCGACAACTGGCGA
        virilis  ---TATGTCATTTTC----TTTGATTTTTTTTTTCCC--------CGTTTCGGGAAAAATTGTAGCAAAAAATTGGTGCAG--C--------AATTTACATAGAACT-GA----------
     mojavensis  ---AAAAACCCTTTCGGAATTTGAGTTTCATCTC-------------------AAGAAATTGTAACAAAAAATTGGTGC--------------ATTTACGTAGAAGT-GA----------
      grimshawi  ---TATGTCAAC-----------ACTCTTGTTTTTTC--------GGGAACTGGCAAAATTGTAGCAAAAAATTGGTTCAC--TCTTTTTCGAATTTACATAGAAGT-GG----------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
       simulans  ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
      sechellia  ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
         yakuba  ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
         erecta  ----------------------------CCTTCG---------------------------------------------------------------------------------TTGAC
      ananassae  ----------------------------------------------------------------------------------------------------------------------GT
  pseudoobscura  G-------CTACGACCTACGACCTACGACCTTCGATC------------------------------------------------------------------------CATGGTTTGAC
     persimilis  GCTACGACCTACGACCTACGACCTACGACCTTCGATC------------------------------------------------------------------------CATGGGTTGAC
        virilis  ----------------------------CCTTGGCGG----------GAGCAGCGGAATG-------------------GACATGTACGATAATGATAATGCCGCTGA-CAT------AT
     mojavensis  ----------------------------CCTTGGCCAAGGGCGACTCGAGTAACTGAGTAGC----------------TGGCCTGTA----------------GCTGGCCAT---TTGAC
      grimshawi  ----------------------------CCTTCGAAA----------GAGCA-CTGAGAGATGATGATGATATTGCCGTGGCCAGCT--AAACTAGCAAGGATACTC--TGT---GTGAC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTGAGTTCGAAGGAGAAGGGGAAAAAAAATGT------AAAA-TGGTGG--------CGGGAAAG---------------------
       simulans  ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTGAGTTCGACGGAGCAGGGG-AAAAAATTGTATTGTAAAAA-TGGTGG--------CGGGAAAG---------------------
      sechellia  ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTGAGTTTGACGGAGCAGGAG-AAAAAATTGT------AAAA-TGGTGG--------CGGGAAAG---------------------
         yakuba  ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTG-------------AGGGG-CAAAAA-TGT---TGGAAAA-TGGTGGCGGA----CGGGAAGG---------------------
         erecta  ACTGCGTTTAACTTTTGATTTG---GCATCTTGACTGAGTACGGC-CACCAGGGG-AATAGA-TGC------AAAA-TGGTGG--------CGGGAAAG---------------------
      ananassae  ATGACCTTTAACTTTTGATTTG---GCATATTGACTGGCGGAGGGCGAGAGTTGG-CGGAGT-TGG------AAAA-TGGCGGGAAATGTCAGCGAAAG---------------------
  pseudoobscura  ATTGCATTTAACTTTTGATTTGACAGCATCTTGACTG-------------AGAGG-GAAAAC-TGA-TGAGGGGAA-GGATGC--------AGGGAAAG---------------------
     persimilis  ATTGCATTTAACTTTTGATTTGACAGCATCTTGACTG-------------AGAGG-GAAAAC-TGA-TGAGGGGAA-GGATGC--------AGGGAAAG---------------------
        virilis  ATTTCATTTAACTTTTGATTTG---GCATCTTGACTG---------------TCG-GACTGC-TGT------TGAGCGGATTT--------TTGGGAAAACTG-----------------
     mojavensis  ATTTCATTTAACTTTTGATTTG---GCATGTTGAC---------------------GACG---TGT------TTAA-GGATTT--------TTGGGAAAATCGCTCTATGTGGACGTATG
      grimshawi  AACTCATTTAACTTTTGATTTG---GCATCTTGAA---------------------GAGT-----T------TTAA--GGCGT--------TTGGGAAACCAGTCGAATATGG-------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------------------------------------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
       simulans  ------------------------------------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
      sechellia  ------------------------------------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
         yakuba  ------------------------------------------------G------------CTGGATGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
         erecta  ------------------------------------------------G------------C----TGGGT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTCGAAAT
      ananassae  ------------------------------------------------GATGGCGTAGCGAC----TGGTT---------AATGGCTTTACAACTTGTTGTCTATAATTATGGTTAAAAT
  pseudoobscura  ------------------------------------------------GATGTTGC-----C----TGGTT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTTAAAAT
     persimilis  ------------------------------------------------GATGTTGC-----C----TGGTT---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTTAAAAT
        virilis  ------------------------------------------------G------------C----TACGA---------AATGGCTTTACAACTTGTTGTCACTAATTATGGTCGAAAT
     mojavensis  TATGTGTGTATGTATATGTGTATGCATGTATGTATGCATGTGGCTGTAG------------C----TATAGCTTTGCCTCGGCAACTTTACAACTTGTTGTCTCTAATTATGGTTGAAAT
      grimshawi  ------------------------------------------------C------------C----GACCA---------AATGGCTTTACAACTTGTTGTCTCTAATTATGGTTGAAAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGC-CACGAATTCC-------AGTTC------ATCCGAGTG-----------------
       simulans  GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGC-CACGAATTCC-------AGTTC------TTCCGAGTG-----------------
      sechellia  GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGC-CACGAATTCC-------AGTTC------TTCCGAGTG-----------------
         yakuba  GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGCACAGTTCTTCC-------AGTTC------TTCCGAGTG-----------------
         erecta  GGGCCGTAATCCTTT-GCTAAACGCAGCA-ACACAG-ACCGCCC------------CGT-TTCGC-CAGTTC--CC-------AGTTC------TTCAGCGTG-----------------
      ananassae  GGGCCGTAATCCTTT-GCTAAATGCAGC--ACACAG-ACCGCCC------------CCTGCTCGCCCAAAAATTCC--GTCCGAATTC----AGTTCCGAGTGAAATGAAACCAAAAGTC
  pseudoobscura  GGGCCGTAATCCTTT-GCTAAATGCAGCA-ACACAGCAACGCCC------------CAG-----C-CGAGCATCCCACGAAAGAGCCCGGAGAGATCCGAGAG-----------------
     persimilis  GGGCCGTAATCCTTT-GCTAAATGCAGCA-ACACAGCAACGCCC------------CAG-----C-CGAGCATCCCACGAAAGAGCCCGGAGAGATCCGAGAG-----------------
        virilis  GGGCCGTAATCCTTT-GCTAAATGCAGCAAACAGAG-TACGCCC------------CGT-TTCCC-------------------------------------------------------
     mojavensis  GGGCCGTAATCCTTTAGCTAAACGT-GCA---------ACGCCT------------CGT-TTCGC-------------------------------------------------------
      grimshawi  GGGCCGTAATCCTTT-GCTAAATGCAGCAAACAGAG-AACGCCCCGAGGCAGCCAGCGA-TTCGC-------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------------GCC----GAAT-CCAT-TGAGTTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
       simulans  --------------GCC----GAAT-CCAT-TGAGTTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
      sechellia  --------------GCC----GAAT-CCAT-TGAGTTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
         yakuba  --------------TCCGGCTGAAT--CAT-TGAGTTTCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
         erecta  --------------GCT-GCGGAAT--CAT-TGAGTTTCCGCGAAATCCATGTCATGGTTAAACGCGACTAATCCTTC--------------CCGTAAGCC-------------------
      ananassae  CTGCAGTCAGGATTGCA----GGATATCGTATGGATTCCCGCGAAATCCGCGTCATGGTTAAACGCGACTAATCCTTC--------------CAGTAAGCC-------------------
  pseudoobscura  --------------ATG----GAAA------T---TTCACGCGAATTCCGCGTCATGGTTAAACGCGACTAATCCTTCCG------------CAGTAAGCC-------------------
     persimilis  --------------ATG----GAAA------T---TTCACGCGAATTCCGCGTCATGGTTAAACGCGACTAATCCTTCCG------------CAGTAAGCC-------------------
        virilis  --------------ACG----AAAT-------------------------CGTCATGGTTAAACGCGGCTAATCCTTGC------CCAGGACCAGTACTCAGGCTCAGGAAACAGTTCCA
     mojavensis  --------------TAG----AA----------------------------TTCATGGTTAAATGTGACTAATCCTTTTG-----CCACGAACAGCAATCC--------------TTGCA
      grimshawi  --------------GGG----AAAT-------------------------CGTCATGGTTAAATGCGACTAATCCTTCCGAGCAACCAAGCCAACCAAGCC--------------AACCA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTTCACGGCAGTTCAG-TTCGGTGGGCGTTTTTGTTTAGTTTCGAAATC
       simulans  --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTTCACGGCAGTTCAG-TTCGGTGGGCGTTTTTGTTTAGTTTCGAAATC
      sechellia  --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTTCACGTCAGTTCAG-TTCGGTGGGCGTTTTTGTTTAGTTTCGAAATC
         yakuba  --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTGCACGGCAGTTCAGTTTTGGTGGGCGTTATTGTTTAGTTTCGAAATC
         erecta  --------------CTTCGC-------------------------------AGCGACCTGAACCCGGTTCAGTTCACGGCAGTTCAG-TTTGGTGGGCGTTTTTGTTTAGTTTCGAAATC
      ananassae  --------------CTTCGC-------------------------------TCCGACCTGGACCTGG---------------------TTCGGTGGGCG-TATTGTTTAGTTTCGAAATC
  pseudoobscura  --------------CTT----------------------------------------TCGGACTCGGGCCAGGACTCGG---------T--GGTGGGCG-TATTGTTTTGTTTCGAAATC
     persimilis  --------------CTT----------------------------------------TCGGACTCGGGCCAGGACTCGG---------T--GGTGGGCG-TATTGTTTTGTTTCGAAATC
        virilis  GCCA------AGCCCTTCACTGAACTCCGACTGTCCGACTGTCCGACTGTCGGTGACCTGAACCCG--------------------G-TTCGGTGGGCG-TATTGTTTATTTTCGAAATC
     mojavensis  GCAG------CATCCTTCGC------------------CCGCCCGCCGGCTGCTGACCTGGACTCGCT----AGC-----------G-CTCTGTGGGCG-TATTGTTTATTTTCGAAATC
      grimshawi  GCCAGCAATCCCTTCTTCACTGAACT------------TTATGCTCCGGCTGCTGACCTGAACCCGGTTCGGAGC----------AG-TTCGGTGGGCG-TATTGTTTAGTTTCGAAATC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBB

                 
   melanogaster  AAAATATTAGCAAA---CAC----------------GCTGAAG-----GCAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGA-------------ACA
       simulans  AAAATATTGGCAAA---CAC----------------GCTGAA------GGAATACG-------CCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGA-------------ACA
      sechellia  AAAATATTGGCAAA---CAC----------------GCTGAAG-----GGAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGA-------------ACA
         yakuba  AAAATATTGGCAAA---CAC----------------GCTGAG------GGAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGAACCCGA------CACA
         erecta  AAAATATTGGCAAA---CAC----------------GCTGAG------GGAATACG-------GCT------GAAAGGGAAAATG--TGCAAGGATTAAGCCGAA------------ACA
      ananassae  AAAATATTAGCAAA---CAC---------------TGACGAAAAGGGCGAAATACG-------G-T------GAAAGGGCAAATG--TGCAAGGATTAAGCCGA-------------GC-
  pseudoobscura  AAAATATTAGCAAATGTCGG----------------CCTGAA------AGGGCAAG-------GAT------GTGCCGG--ACTG--TGCAAGGATTAAGCCGCGAACGAGAACACGGCA
     persimilis  AAAATATTAGCAAATGTCGT----------------CCTGAA------AGGGCAAG-------GATGTGCCGGTGCCGG--GCTG--TGCAAGGATTAAGCCGCGAACGAGAACACAGCA
        virilis  AAAATATTGGCAAA---CAC----------------ACACGG------CGAATACG-------GGT------AAACG---CGGCG--TGCAAGGATTAAGCCGCCGA----------GCA
     mojavensis  AAAATATTTGCAAA---CACTGCGAATAACCTAGAACCGAGG------CGAGGAAGAAGAAGTGGT------AGGCG--TCGTCGATTGCAAGGATTAAGACG-----------------
      grimshawi  AAAATATTAGCAAA---CAC-------------------TGG------CGAATACT-------GGA------GAA-----CTGTG--TGCAAGGATTAGCGCG--------------ATA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTTC----TAACC------CGAA----------
       simulans  CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TTTCC----TAACC------CGAA----------
      sechellia  CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGTG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTCC----TAACC------CGAA----------
         yakuba  CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTCC----TAACCCGAATGCGTT----------
         erecta  CATCCTTTCG--------CAACCTTGGACCCTTCCACGTTCGCG-CACACGCTCGC--AATTTTACGA-CTT--------------TCTCC---------------CGAT----------
      ananassae  CATCCTTTCG--------CAACCTTGAGCC-------------A-GGCACGCTCGC--AATTTTATGA-CTT--------------TCGCC----CAACC------CGCC----------
  pseudoobscura  CATCCTTTCG--------CAACCTTGG------CAGCCTTGGGA-CACACGCTCGC--AATTTTACGA-TC---------------------------CC------TGAA----------
     persimilis  CATCCTTTCG--------CAACCTTGG------CAGCCTTGGGA-CACACGCTCGC--AATTTTACGA-TC---------------------------CC------TGAA----------
        virilis  CATCCTTTCG--------CAACCTTGGCA----------------AACACGCTCGC-GACTTTTATGA-CGT--------------TTGCTGCCACATGC------CACAAACTAGCTGC
     mojavensis  CATCCTTTCGCCTTGACACAACCTTGAC------------------ACACGCTCGC-TGATTTTATGG-CATTTCATTGGCAAAAGTTGTTGCCACATGC------CACA----------
      grimshawi  CATCCTTTCG--------CAACCTTGGAAGC--ACATTTCTGCAGAGCACGCTCGCTTGATTTTATGACCAC--------------TACTTGCCACATGC------CAAA----------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------TGCGAT---------TTCGATTCCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCTAAGATCCT
       simulans  ---------TGCGAT---------TTCGATTTCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCTACGATCCT
      sechellia  ---------TGCGAT---------TTTGATTTCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCAACGATCCTACGATCCT
         yakuba  ---------TGCGAT---------TGCGATTCCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCT-------T
         erecta  ---------TCCGAT---------TCCGATTCCGA--------------------------------CTTTGGCGAAAACGCATGCCAAGCGCATGTCCTTGCCACGATCCT-------T
      ananassae  ---------GCCGAT---------TCTGAATCCGAATCCTCGAATTCCTTCTCTATATTGACTTTGTCTTTGGCGAAAA--CATGGCTCGCGGA--TCCTTGGCCCGTTCACGCGACACA
  pseudoobscura  ---------TGC--T---------TGCCTCCTTGC--------------------------------CTCTGCCAC-----TCTGCCA---------CTCTGCCACATGCGCGCGTCTCT
     persimilis  ---------TCC--T---------TGCCTCCTTGC--------------------------------CTC------------CTGGC----------CTCTGCCACATGCGCGCGTCTCT
        virilis  GACTGCGACTGCGACTGCGCCTGCCTCATTCTTGG--------------------------------TCCTGGCTAATA-ATGTGCAAT-TGTTCA-----GCGAAGAGTTGACTTTCGT
     mojavensis  ---------TGCCAC-ACAGCTAACTATGTTTTCC--------------------------------TCCTGCCTC---------------------------------CTGCCTCCTGT
      grimshawi  -----TCATCGCATC-----CTTCTTCGTCCGCAG--------------------------------TCCTGGCTAATA-ATGTGCAATGCGCACG-------------CTGCTTTTGTT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CGATTG--------------------TTTCGTCCTAAGAGTTGACTTTCG--TTTTTTAAC-----------------TCGTCCCGTGCCGAAG--------GACAATC--CTTTGC---
       simulans  CAATTG--------------------TTTCGCCCTCCGAGTTGACTTTCG--TTTTTTAAC-----------------TCGTCCCG-GCCGAAG--------GACAATC--CTTTGC---
      sechellia  CAATTG--------------------TTTCGCCCTCCGAGTTGACTTTCG--TTTTTTAAT-----------------TCGTCCCG-GTCGAAG--------GACAATC--CTTTGC---
         yakuba  CGACT-----------------------------------TTGACTTTCG--TTTTTTAAC-----------------TCGTCCCT-GGCGAAG--------GACAATC--CTTTGC---
         erecta  CGATTG--------------------TTTCGTCCTCCGAGTTGACTTTCG--TTTTTTAAC-----------------TCGTCCCT-GCCGTAG--------GACAATC--CTTTGCCCA
      ananassae  CCATTGTCCTGCGATTCGCAGGACCCTTTCAGTCGCAGGATTGACTTTCG--TTTTTTAAC-----------------TCGTCCTT-GCCGTGC--------AACAAGC--CTTTGC---
  pseudoobscura  CATTTG--------------------T-------------TTGACTTTCG--TTTTTTAA---------------------------GC--------------GTAGCC--CTTCGA---
     persimilis  CATTTG--------------------T-------------TTGACTTTCG--TTTTTTAA---------------------------GC--------------GTAGCC--CTTCGA---
        virilis  TTTTTT--------------------CC---------------GCTTTTTACTTTTTTAACC----------CGCGCGTTGTCCTT-GCCCAA---------GCCTTTC--CCCTGC---
     mojavensis  CTCCTG--------------------CC---------------ACCTTCGTCCTGGCTAATAATGTGCAATGCGCACGCTGCCTTT-GTTGCACTTCTAGTTGACTTTCGTTTTTTC---
      grimshawi  CAGTTT--------------------TC-----AGCAATGTTGACTTTCAGTTTTTTTAACC-----CGACCCACGGCATGTCCTT-GCCAAGCCTTTTTCCGGCTGCC--TTTGGC---
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---CGATTTGCCCAT--TGTTGCGGTTGTCTCGACTCC--TTT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGCGTCCCCTTTGTGGCGAATTTCG
       simulans  ---CGATTTGCCCAT--TGTTGCGGTTGTCTCGACTCC---TT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGCGT--CCTTTGTGGCGAATTTCG
      sechellia  ---CGATTTGGCCAT--TGTTGCGGTTGTCTCGACTCC---TT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGCGT--CCTTTGTGGCGAATTTCG
         yakuba  ---CGATTTGTCCAT--TGTTGCGGTTGTCTCAACTCC---TT------TTTTGCCAGAGGG---TTACG---GTCC-ATTGTGGTGGCGATTGTCGTGT--CCTTTGTGGCAAATTTCG
         erecta  ATGCGATTGGCCCAT--TGTTGCGGTTGTCTCAACTCC--TTT------TTTTGCCAGAGGG---TTACG---GCCC-TTTGTGGTGGCGATTGTCGAGT--CCTTTGTGGCGAATTTCG
      ananassae  ---CGATTTTTCCAT--TGTTGCGGTTGTCACAACTCCTTTTT------TTGTGCCAGAGGG---TTGCA---TCCT-TTTGTGGTGGCGATTGTT-TAT--CCTTTGTGGCCATCCTC-
  pseudoobscura  ---TGGCATATCCTT--TGTTGCGGTTCTTTCTACTCT--TTTTTTTTCTTTTTAGAGAGGG---TTGCA---ATCCTTTTGTGGTGACAATTGTGTC----CCTGTGTGTCGTGCTCC-
     persimilis  ---TGGCATATCCTT--TGTTGCGGTTCTTTCTACTCT--TTT------TTTTTAGAGAGGG---TTGCA---ATCCTTTTGTGGTGACAATTGTGTC----CCTGTGTGTCGTGCTCC-
        virilis  ---AGCCCTTT------TGTTGCGGT--------CGCA--TTT------TTTA-----CGGG---TTGCACACGGCA-----------CAATTGCCAC----CTTTTGTGGCAATTGTCG
     mojavensis  ---AGCCTTTTTTATCCTTTTTTCCT--------CACA--TTT------TTTAGCC--CGCGTCCTTGCCCGAAGCC-TTT-------CGCCTGCAGC----CTTTTGTTGCGGTCGCAT
      grimshawi  ---AAGCCTTT------TGTTGCGGT--------CGCA--TTT------TTTA-----CGGG---TTGCAC--GGCA-----------CAATTGCCGC----CTTTTGTGGCAATTGTCG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ------ACCCGG-----GATC-----GCAGTTTTTTACGATCCTCAACGG----G----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTG
       simulans  ------ACCCGG-----GATC-----GCTGTTTTTTACGATCCTCAACGG----G----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTG
      sechellia  ------ACCCGG-----GATC-----GCTGTTTTTTACGATCCTCAACGG----G----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTG
         yakuba  ------ACCCGG-----GATC-----GCTGTTTTTTACGATCCTCAACGG----C----------------TTTTACG------ACC--------TCCGCCCGTTTTTTAAGCCTTTCTG
         erecta  ------ACCCGG-----GATC-----GCCGTTTTTTACGATCCTCAGCGG----C----------------TTTTACG------ACC--------TCCGTCCGTTTTTTAAGCCTTTCTG
      ananassae  -------CCGGG-----GTTC-----GCTGTTTTT-----TTCTCAATAC----G----------------TTTATGG---TGCATC--------CGCGTCCGTTTTTTAAGCCTTTTTG
  pseudoobscura  -------TCGGG-----GTTCCCTCAGCCTTTTTTTACGAACCTCAAAGGATGCG----------------TTTTATG------GCCGTCCGCCGTCCGCTCGTTTTTTAAGCCTTTCTG
     persimilis  -------TCGGG-----GTTCCCTCAGCGTTTTTTTACAAACCTCAAAGGATGCG----------------TTTTATG------GCCGTCCGCCGCCCGCTCGTTTTTTAAGCCTTTCTG
        virilis  ----TCATTGTGCTGCCGGCT-----GC-------------TCGCAGTGC----G------AAGGTCCTTTTTTTGCA--------------------GCGTTTTTTTTAAGCCTTTTTG
     mojavensis  ----TTTTTATG-----GGTT-----GCAATCCTTT----GTGGCAAATC----GGTTGACATGGTCGATGTCCTGCAG----GACC--------TTCGCTTGTTTTTTAAGCCTTTCTG
      grimshawi  GCAATTGTAGTA-----GCTC-----GT-------------CCTCGATCC----G------CACGTCTTTTTTTTATGGCGAAGGTC--------CTTCCTTTTTTGTCAAGCCTTTCTG
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CTCTGCCATCCTCTGACCCGTTCAGTTCAAA-----TCAGTTCGGTG-TCAA---CTCTTTCGG------GTTCTCATAGCGGGTTGT--------AAAATCC----GGCTGGAACAATA
       simulans  CTCTGCCATCCTCTGACCCGTCCAGTTCTGATCAGTTCAGTTCGGTG-TCAA---CTCTTTCGG------GTCCTCTTCGCGGGTTGT--------AAAATCC----GGCTGGAACAATA
      sechellia  CTCTGCCATCCTCTGACCCGTCCAGTTCAGATCAGTTCAGTTCGGTG-TCAA---CTCTTTCGG------GTCCTCTTCGCGGGTTGT--------AAAATCC----GGCTGGAACAATA
         yakuba  CTCTGCTCTGCTCTGACCCGTTCAGTTCAGA-----TCAGTTCGGGG-TCAA---CTCTTTCGG------GTTCTCTTCGCGGGTTGT--------AAAATCC----CTCTGGAACAATA
         erecta  CTCTGCTCTCCTCTGACCCGTTCAGT----------TCAGTTCGATG-TCAA---CTCTTTCTG------GTCCTCTTCGCGGGTTGT--------AAAATCC----GTCAGGAACAATA
      ananassae  CTCTGCTCTCCTCTGACCCGTTCAGT----------TCAGTTCGGGG-TCAA---CTCTTTAGG------ACTTTCT----GGGCTGT--------AAAATCCT---TTCCCAAACAATC
  pseudoobscura  CTCTGCTCTGCTCTCTCC---TCAGATCAGA-----GCTCTCCGAAGATCAG---TTTTTTGGG------CTGCT------GGGTTGT--------AAAATCTCTCGCGCTGGAATAATA
     persimilis  CTCTGCTCTGCTCTCTCC---TCAGATCAGA-----GCTCTCTGAAGATCAGTTTTTTTTTGGG------CTGCT------GGGTTGT--------AAAATCTCTCGCGCTGGAATAATA
        virilis  CTCTGCTC----------------------------------------TCAA---CTCTTTCTG-CCAGAGTTCAGGTCGAGAGTTGTCTGTATCGTAAATAT----TAATGGAAGAATG
     mojavensis  CTCTGCTCTGCT----------------------------------G-TCAA---CTCTTTTTGCCCAGAGTTCAGTTCGAGCCGTGTTTTT----------------------------
      grimshawi  CTCTGCTC----------------------------------------TCAA---CTCTTTTTG-CCAGAGTTCAGGTCAGGAGTTGT---------AAATAT----CACTAGAATAATA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  AAG-TTTTTGACCAGATTCCGGGAA-----GTGTGTA-GCGAT----------TTTTTAAAA--------------TG------------------TTTTTTTTTTTTTGTT--------
       simulans  AAG-TTTTTTACCAGATTCCGGGAA-----GTTTGTA-GCGAT----------TTTTTAAAA--------------TG------------------TTTTT---------TT--------
      sechellia  AAG-TTTTTTACCAGATTCCGGGAA-----GTTTGTA-GCGAT----------TTTTTAAAA--------------TG---------------------TT---------TT--------
         yakuba  ACA-TTTTTTACCAGATTCCCGGAA-----GTTTGTA-GCGAT----------TTTTTAAGA-------------ATG------------------TTTTG---------GT--------
         erecta  ACA-TTTTTTACCAGATTCTGGGAA-----GTTTGTA-GCGAT----------TTTTTAAAA-------------------------------------CA---------TT--------
      ananassae  A-A-TTTTTTATAAATTTCCTGGAAATTTTATTTAAG-GCTAT----------TTTTTAGTC--------------GA------------------TTTTT---------TG--GGCTGC
  pseudoobscura  AAA-CTTTTTACCAAATTCCTGGAA-----ATTTTCGTGCGATTTTTAGTTTGTTTTTAAAC--------------CAATTTTTGGGCCTGTGA--TTTTT---------TTTGGACAGC
     persimilis  AAA-CTTTTTATCAAATTCCTGGAA-----ATTTTCGTGCGATTTTTTGTTTGTTTTTAAAC--------------CAATTTTTGGGCCTGTGATTTTTTT---------TTTGGACAGC
        virilis  GAACTTTTTTATGGACTTCGCAGAA--------CCGA-GCTGC----------TTTTTGCTCGATCTTTTTGGCTAGG--------------------------------TT--------
     mojavensis  ----TATTTTAGCCACTTCTCAGAA--------GGAA-GTCAC----------TTTTTTACC--------------CG--------------------------------TT--------
      grimshawi  GCA-TTTTTTGTGCATTTCGCAGAA--------CTCA-ACTCG----------TTTTTTACT--------------AG--------------------------------GA--------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --TTTTTTAGAAGTGCAATCTTTATTTTGGCAAATTGTAGGAACTTAAGCGGAATTTA-------------------------------------------TTAG-GTTTCTCGG--AA-
       simulans  --TTTTTTAGAAGTGCAATCTTTATTTTGGCAAATTGTAGGGGCTTAAGCGGAATTTA-------------------------------------------TTAG-GTTTCTCGG--AA-
      sechellia  --TTTTTTAGAAGTGCAATCTTTATTTTGGCAAATTGTAGGGGCTTAAGCGGAATTTA-------------------------------------------TTAG-GTTTCTCGG--AA-
         yakuba  --TTTTTTAGAAGTGCAATCTTTATTTTGGCAAATTATAGGGACTTAAGCGGAATTTA-------------------------------------------TTAG-GTTTCTCAG--AA-
         erecta  --TTTTTAAGAAGTGCAATCTGTATTTTGGCAAATTGTAGGGGCTTAAGCGGAATCTA-------------------------------------------TCAG-GTTTCTCGG--AA-
      ananassae  GATTTTTTAGAAGAGCAATTATT-TTTCGCCAAATTGCAAGGGGTTAGGATGAATTTT-------------------------------------------TGGA-GTTTCCTGGAAAA-
  pseudoobscura  TATTTTTTAGAAGAGCAG-TTTTTTTTTGGCAA-----AGGGTTTTTAGTGGAATTTT-------------------------------------------TTTGTGATTCGCAG--AAT
     persimilis  TATTTTTTAGAAGAGCAGTTTTTTTTTTGGCAA-----AGGGTTTTTAGTGGAATTTT-------------------------------------------TCTGTGATTCGCAG--AAT
        virilis  --TTCTTTAGCGAAACGATT----TTTTAGCAA-------CGGGTTAAGCAGAATTCT---------------------------------------GGAACTAT-GTTTCCCGG--AA-
     mojavensis  --TTTTTATGCATCGCGATT----TTTT-GCTG-------GAACTTTTCTGGAATTCT---------------------------------------GTAACTGG-ACTTCGCGG--AA-
      grimshawi  --TTTTTTAGTGAAGCACTT----TTTTAGCAA-------CGGGTTAAGCGGAATTCTTCCATCAGCTTCGTGGAATGCTGCTTTGATTAGCACAGCTCAAATAG-TTTTCT-----AA-
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTT-CC-----------------------------------------ACA------TTTTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
       simulans  TTT-CC-----------------------------------------ACA------TTTTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
      sechellia  TTT-CC-----------------------------------------ACA------TTTTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
         yakuba  TTT-CA-----------------------------------------GCATTTTTTTTTTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
         erecta  TTT-CA-----------------------------------------CCA------TATTTTGA------------T-TAGGC-A-----------------AAAGGCTTAAAAAACAGC
      ananassae  TGT-CC-----------------------------------------TCT------TTCTTTAA------------T-TAGCCAA-----------------AAAGGCTTAAAAAACTAA
  pseudoobscura  TTT-CC-----------------------------------------CCT------TTTCTTGA------------T-TAAAA-A-----------------ACAGG------------A
     persimilis  TTT-CC-----------------------------------------CCT------TTTCTTGA------------T-TAAAA-A-----------------ACAGG------------A
        virilis  TTC-GC----TTTGATTAGCACGGGTTAAACGGTTTTTTCTAATTTTCAG------TTTTTTACGAGCATTTTCTTT-CATTT-G-----------------AAAGGCTTAAAAAAT---
     mojavensis  TCCTGC----TTTGATAAG----------------------------CAG------CGCATAAAGTGTTTTCTAATT-TAGTT-TTTTTCTTTTTTACAAGCAAAGGCTTAAAAAAC---
      grimshawi  TTT-ACAATTTTTTACTCG----------------------------CTA------TTTTTTGTTTATATTTTTTTTGTAGCA-A-----------------AAAGGCTTAAAAAATA--
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CCGCAACCTTGGTGTT---AATTGAGATGGATAGATAAAGAAGATGTCCTTA---GGAAA-----------CTATCTTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
       simulans  CCGCAACCTTGGTGTT---AATTGAGTTGGATAGATAAAGAAGATGTCCTTA---GGAAA-----------CTATGTTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
      sechellia  CCGCAACCTTGGTGTT---AATTGAGTTGGATAGATAAAGAAGATGTCCTTA---GGGAA-----------CTATGTTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
         yakuba  CCGCAACCTTGGTGTT---AATTGAGATGGTTAGATAAAGGAGATGTCCTTA---GAAAA-----------CTATGTTTTTAAGTCGAAAAGCCAGAAAGTCA-----------------
         erecta  CCGCAACCTTGGTGTT---AATTGAGACGAATAGATAAAGAAGATGTCCTTA---GGAAA-----------CTATGTTTTTAAGTCGAAAAGCCAGAAAGTCA-----------------
      ananassae  ATTCAGCCTTGGTGTT---AGCTGAAAGAGATAGAAAAGG-----------A---CAAAA-----------CAATGTCCTTAAGTCGAAAAGCCAAAAAGTCA-----------------
  pseudoobscura  CCTCAGCCTTGG------------------------AAAAGTAATTTTCTCATTTGTAAATTGTTTATTTTTTGTATTTTTAAGTCGAAAAGCCAAAAAGTCACTTTTTTGTGCGTGTGT
     persimilis  CCTCAGCCTTGG------------------------AAAAGTAATTTTCTCATTTGTAAATTGTTTA-TTTTTGTATTTTTAAGTCGAAAAGCCAAAAAGTCACTTTTTTGTGTGTGTGT
        virilis  --GCAGCCTTGATTTTAAGAGTTCTCTCTTA---------------TTTTTT------TA-----TTTCTTATTTATTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
     mojavensis  --GCAGCCTTGAGTTT------------------------------TTCCTT------TA-----------GTTTGTCTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
      grimshawi  --GCAGCCTTGAGTTTAATGGCCAAACCGTACATAATTGGTAGGTGTTTTTC------AA-----------TCTTTTTTTTAAGTCGAAAAGCCAAAAAGTCA-----------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---AATGCGATTTTTTATGGGAAC-AAGAC--AAAA--AAGGGTTTTGCGGAG--ATATCACGTG--GCGTGGTATCAGTTT---------------------------TTTTTTTCCGA
       simulans  ---AATGTGATTTTTTATGGGAAC-AAGAC-AAAAA--AAGGGTTTTGCGGAG--ATATCACGTG--GCGTGGTATCAG------------------------------TTTTTTCCAGA
      sechellia  ---AATGTGATTTTTTATGGGAAC-GAGAC--AAAA--AAGGGTTTTGCGGAG--ATTTCACGTG--GAGTGGTATCAG------------------------------TTTTTTCCAGA
         yakuba  ---AATGCTATTTTTTATGGGAAC-AAGACAAAAAA--AAGGGTTTTGCGGAG--ATTTCACGTG--GCGCGGAATCAG-------------------------------TTTTTTCAGA
         erecta  ---AATAC-GTTTTTTATGGAAAC-AAGAC--AAAA--AAGGGTTTTGCGGAG--ATTTCACGTG--GCGCGGTATCAG-------------------------------TTTTTTCAGA
      ananassae  ---AAAGTAGTTTTTTATCGGAAT-GAGACAAAAAG--AAGCCTTTTTTAGAG--GTTTCATGGA--GTGAGGCATTGG-------------------------------GTTTTCAGAA
  pseudoobscura  GTGGGTGTTTTTTTTTATCGAAATGGAAAC--AAAA--AAGGGTTTTGTGGAAACACTTCATGGGGTGTGTGGTATGACTTTT----------------------CCCCTTTTTTTAAGG
     persimilis  GTGTGT-TTTTTTTTTATCGAAATGGAAAC--AAAA--AAGGGTTTTGTGGAAACACTTCATGGGGTGTGTGGTATGACTTTT----------------------CCCCTTTTTTTAAGG
        virilis  ---AATGTTGCCCGT----GGACA-GCGAC--AAAG--AAA----TGCCGAAG--GCTGCGCTGA--GAGCGTGAAAAATTTGATTGCCTCAAA-----------AAATTGTGGCCAAAA
     mojavensis  ---AAAGTAGCCTGT----GGATT-GGTAT--AAAGCAAAA----TCCTCAAG--GCTTCGGTGA--GAGCGTGAAAAAATTGATTTGCACAAAAAACAAAACACAAATTGTGGCTAAAA
      grimshawi  ---AATG--GAATGT----GGAGA-GCGAC--AAAG--AAA----TTCTCGAG--ATTTCGTT-----AGCGGAAAAATTGTGG------------------------------CTAAAA
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CAT--GTTGTGAA----CTTACAAAGACGAT-CATAAAGT--AGAT--------CTTA-ACC-CAAAGTTAA-TCT-GCTTTCGGAGAAAA-AAAC-TGCGGG-----CTCAAACGAAAG
       simulans  CAT--GTTGTGAA----TTTACAAAGACGAT-CGTAAGGT--AGAT--------CTTA-ACC-CAAAGTTAA-TCT-GCTTTCGGAGAAAA-ACGC-TGCGGG-----CTTAAACGAAAG
      sechellia  CAT--GTTGTGAA----CTTACAAAGACGAT-CGTAAAGT--AGAT--------CTTA-ACA-CAAAGTTAA-TCT-GCTTTCGGAGAAAA-ACGC-TGCGGC-----CTTAAACGTAAG
         yakuba  CAC--GTTGGTAA----CTTACAAAGACGAT-CATAAAGT--AGAT--------CCTA-ACC-CAAAGTTAA-TCT-GCTTTCTGGGAAAA-TCAC-TG---------------CGAAGA
         erecta  CACTTTTTAGGAA----CTTACAAAGACGAC-CATAAAGT--AGAT--------CTTA-ACC-CAAAGTTAA-TCT-GCTTTCTGGGAAAA-ACAC-TGCGG------CTTAAACGAAGG
      ananassae  TTT--ATTTTAAACAGGCTTACAAAGACGATCCATAAAGG--CAAT--------ACTA-ACC-CAAAGTTAA-TCTGGCTTACAAGGAAAA-ACTC-CATGGG-----CC----------
  pseudoobscura  TTT--TTTTTC------TTTAAAGGGAATAT-AATAAAGC--AGAT--------AGAA-ACC-GAAAGTTAA-TCT-GGTTTCGAGGGAAAGTCAT-CAGGGGAGGTCGCTAAACGA--G
     persimilis  --T--TTTTTC------TTTAAAGGGAATAT-AATAAAGC--AGAT--------AGAA-ACC-GAAAGTTAA-TCT-GGTTTCGAGGGAAA-----------------------------
        virilis  -----GTTAAAGG----CTTAGA------CT-CGTAAAAAAGAAATGCGCCTACAATA-GCC-ACAAGTCAA-TTT-TCAACCAAGTGAAA-TTCC-AG---------------------
     mojavensis  -----GTTAAAGG----CTTAGA------AT-CGTAAATA--AAATGGTTTTGTAAAAGGCT-AGAAGTTAATTTT-TTAACCAAGCAAAA-TTTCGAG---------------------
      grimshawi  -----GTTAAAGG----CTTAGAG-----GT-CGTAAA----AAACGTACTTA-AATA-GCTGAAAAGTTAA-TTT-TTCATTAGGTGAAA-TTCT-TA---------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  GAAATGAAATCTAAACAACAGAGC-AA--GTCTTACTAAAAAT---AAATGAAAACCA---ATATAAGTTTATAAATT------TCAATTAGTAAATTTGTT-AACTCAACTATACAAAT
       simulans  GAAATGAAATGTAAATAGCATAGC-AA--GTCCAACTTAAAAT---AAATGAAAACCA---AGATAAAATTATAAATT----TTGCAATTATTAAATTTGTT-AATTCAGCTATACAAAT
      sechellia  GAGATGAAATCTAAGTAACATAGC-AA--GTCTAACTTAAAAT---AAATGAAAACCA---AGATAAATTTATAAATT------------------------------------------
         yakuba  CA---GAAATCTCAACAACTGAGA-AA--CCCTAACTTAAAGT---AAATGAAAACAA---AGATAAATGCATAAATTA--TTTACAATTATTAAATTTGCT-CACTCAATCATACAAAT
         erecta  CAGTTGAAATCTAAGCAACAGAGACAA--GCAAAACTTAAAAT---AAATGAAAATAT---TTATA----------------TTACTAATATTAAATTTGTT-AGCTCAATCATACTCAT
      ananassae  ---ATATATTTTAAG----------GG--GTAATGTTTAAAAG---ACATGCAGTTTT---TGGTAAAC----------------------GTGATTTTTCC-CACAAAACT--------
  pseudoobscura  GAGGTGGCTGCCACAAAGGAGAGG-AA--TTGCCACCGAGAGT---GGAAAAGTCACA---GAAGAAGGCTA------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ----TGAAAAGAAAAT---------TGGCTTCAAAATGAAATA---ATAGGCGAGCTA---AGATTGAGGAGAAAAATGAAATGTAAGCTAAGGAATTCAAG--------CAAACTCCAC
     mojavensis  ----AGAAAGCAAAAT---------TA--TGGAGAATGGCAGAGGCACAGAAAAACTAGATAAATAGAGGGAATAACTTAAATATAAATTTAAAAATTTTGT----------ATTTAAAT
      grimshawi  ----TGAAAGGAAAACA--------CA--TTTCAAATGAAATT---GTAG-----------CCATAGA----CTAATTCTAAAAATAATTTATGATTTCTTTCCCTTCCTCAATTTATAT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CGTGCCCGAT--TTTGAATAGCAATTACTGGAACCTGATAGACAATTATAATTAATCCCTCAAAATTAATATTCAGT-GCAGTTAGCTCAAAATTATACCAACT---CAT-----TG---
       simulans  CGTGTCCGAC--TTTGAATAGCAATTACTGGAACCTGATAGACAATTATAATTAATCCCTCAAAATTAATATTCAGT-GCAGTTAGCTCAAAAATATACCAACT---CAT-----TG---
      sechellia  -----------------------------------TGATAAACAATTATAATTAATCCCTCAAAATTAATATTCAGT-GCAGTTAGCTCAAAATTATTCCAACT---CAT-----TG---
         yakuba  CGTGCCCGCC--TTTGAACAACAATATCAGGTTCCATACAAATAATTATAATTAGTTCCTCATACTTGAAATTCAGT-GCAGTAAGCTCAAAATAATACCAACT---CAT-----TG---
         erecta  CGTGCCCTAC--TTTGAATTACAATATCTGGTGCC--TCAGATAATTATAATTGGTCCCCCATACTTGAAATTCGGT-GCAGCAAGCTTACAAATTTACCAACT---CAT-----TG---
      ananassae  -----------------------------------------GCAACCACAAATCATCAAACATA-TGGATGGGGGAG-ATCGTAAATTGAAAAGTTTAGCAACT---CATACTGGTT---
  pseudoobscura  ------------------------------------------------------------------------------------------AAATTTCGCCAACT---CAT-----TGACA
     persimilis  ------------------------------------------------------------------------------------------AAATTTCGCCAACT---CAT-----TGACA
        virilis  T-----------TTTCAGCACTTGGTAGAGGGCCCAGAT-----------------------------ATGTCCAAA-ATGATTAGTTCC-AACCATAGTCGCA---TAT-----AT---
     mojavensis  T-----------TTTCCATATTT---------------------------ACTTATCTATTAT--TTAATGTTTGACTATAATTTTGTGC-TACTTCAATTTTG---TAT-----AT---
      grimshawi  TTAGCCCATCGCTTTTAAAAGTTGTTTGACAGATCCACT--CTATTGCGCAACAGCCCATGATCATTATCGTCTGGCCAATATCTCGTCT-GAGCCATGTCTAACATTAT-----TG---
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------------AAGCACAAAATTTC--------AAAGCTAAGACTTAGC-----------CGTTTTTTG---ATTGCCTTCATAAATTGTA-------------------------
       simulans  ---------------AAGCACAAAATTTC--------A-----AAGACTTAGC-----------CGTTTTTTG----------------ATTGTA-------------------------
      sechellia  ---------------AAGCACAAAATTTC--------A-----AAGACTTGGC-----------CGTTTTTTG----------------ATTGTA-------------------------
         yakuba  ---------------AAGCACAAAATTTC--------AAAGCTACAACCTAGC-----------CATTTTTTG---ATTGCCTTCATAAATTGTGC------------------------
         erecta  ---------------AAGCACAACATTTC--------AAAGCTACGTCTTAGC-----------CATTTTTTG---ATTGCCTTCATAAATTGTA-------------------------
      ananassae  ---------------AATC-CGAAATTT---------------ACATCTCAGA-----------TGATTTTTG---ATTAGATTCATAAATTGAA-------------------------
  pseudoobscura  GATACAGATACAAACAGCCACAGAGCTAC--------AGATACATTCCATGGCAGATACAAGCACAGTTTTTGATGATTGCCTTCATAAATTGAATGTTTTGGG-TTTTTTTTTTGAGGA
     persimilis  GATACAGATACAAACAGCCACAGAGATAC--------AGATACATTCCATGGCAGATACAACCACAGTTTTTGATGATTGCCTTCATAAATTGAATGTTTTGGGTTTTTTTTTTTTAGGA
        virilis  ---------------ATACATACATGTTTTTTAAGCA-----------GCAGG-----------CGTGTCGCG---GTCGTATTCATAAATTGAA-------------------------
     mojavensis  ---------------AATTAAAACAATTTC------------------TCAGG-----------CGTGTCTCA---CTCACATTCATAAATTCAA-------------------------
      grimshawi  ---------------GTTCCGAACAATTC-------------------CCAGG-----------CGTGTCGCG---TTCGTATTTATAAATTGAA-------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -CTTCCA-AGTTGAATCTGATTTCGGCATTTT-CCAT------------C---TATGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
       simulans  -CTTCCA-AATTGAATCTGATTTCGGCATTTT-CCAT------------C---TATGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
      sechellia  -CTTCCA-AATTGAATCTGATTTCGGCATTTT-CCAT------------C---TATGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
         yakuba  -CTTCCA-CTTTGGAACTGATTTCGGCATTTT-CCAT------------C---TGTGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
         erecta  -CTTCCA-CTTTGGAGCTGATTTCGGCATTTT-CCAA------------C---TATGTAAC-CAACGAGGTTAATTATC----GCCG-CATTGCTCAATA----AG-AAAAATTAACATT
      ananassae  -TTTTCA-GTTCCAGCCCGGTTTCGGCATTTT-CCAT------------C-------ACAC-TAACGGGGTTAATTATCGCT-GCCG-CATTGCTCAATA----AGAAAAAATTAACATT
  pseudoobscura  ATTTTCA-TTTTGA----GATTTCGGCATTTTCCCAT------------T---CATCCATCGTAACGGGGTTAATTATCGTTAGCCGATGTTGGGCAATG----GG-AAAAATTAACATT
     persimilis  ATTTTCA-TTTTGA----GATTTCGGCATTTTCCCAT------------T---CATCCATCGTAACGGGGTTAATTATCGTTAGCCGATGTTGGGCAATG----GG-AAAAATTAACATT
        virilis  -ATTCAA-TTTTCAGC--AGCCCGATCAATTT-TCATGCCGGTCAGCCGC---CGTAACAC-CAACGAGGTTAATTATC----GGTG-CATTGCTCAATG---GGA-AAAAATTAACATT
     mojavensis  -TTTCAATTTTTCAGC--AACTGGATCGATTT-TCAT-----------GC---CGTAACAC-CAACGAGGTTAATTATC----GTCG-CATTGCCCAATGTGAAGA-AAAAATTAACATT
      grimshawi  -TTTCAA-TTTTCAGC--AACTCGATCAATTT-TCATGCCGGCCAGCAGCAGGCGTAGCAT-CAACGAGGTTAATTATC----GGCG-CATTGCCCAATG----GG-AAAAATTAACATT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TTCTC-------------------------------------------------------------------------------------------------------------------
       simulans  TTCTC-------------------------------------------------------------------------------------------------------------------
      sechellia  TTCTC-------------------------------------------------------------------------------------------------------------------
         yakuba  TTCTC-------------------------------------------------------------------------------------------------------------------
         erecta  TTCTG-------------------------------------------------------------------------------------------------------------------
      ananassae  TTCTC-------------------------------------------------------------------------------------------------------------------
  pseudoobscura  TGCCCCTCCCCCTCCCCCTCCCCCACAGCCCCGCACCCACCCTTCCACTCCTTTTCATTCCTCTGCGATCTTTCCTGCTC----------------------------------------
     persimilis  TGCCCCTCCCCCTCAGC-----------CCCCGCCCCCACCCTTCCACTCCTTTTCATTCCTCTGCGATCTTTCCTGCTC----------------------------------------
        virilis  TTTTT--------------------------------------------GCTGTTGTTGTTGTTGCTTTTTTGTCTGTTTGGTCGGGCAGTCAGTCAGTTAGGCAGTCAGGCAAT---GC
     mojavensis  TTTTC---------------------------------------------CCCTCTTCGTCTTCGTCTTCTTCTCCTTCT--------------TCTGC------GTCAGTCACTTGGGC
      grimshawi  TTTTG---------------------------------------------TTTCTTTGGTTTCTTACTTTTTGTGTGTTC--GCAGTCAGTTAGTCAGTCAGGCAGTCAGTCAGTTAGTC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -----------------GGTGG-TG---------CGACTTCCTTTTGGGA---CCAGACAAAGAGAAGATCGGACCCTGGCAGAGATCCCCTCCCCCCCTCCATCACCCATTCAATTCGG
       simulans  -----------------GGTGG-TG---------CGACTTCCTTTTGGGG---CCAGACAAAGAGAAGATCGGACCCTGGCAGAGATGCCC---------CTATCCTCCATTCAATTCGG
      sechellia  -----------------GGTGG-TG---------CGACTTCCTTTTGGGG---CCAGACAAAGAGAA-----GACCCTGGCAGAGATACCC---------CCATCCCCCATTCAATTCGG
         yakuba  -----------------GCTGG-TG---------CGACTTCCTTTTTGGGGGCCCAGACAAAGCGAAGATCGGACCCTGACTGAGTCCCCA---------------CCCATTCGT-----
         erecta  -----------------GCTGG-TG---------CGACTTCCCTTTGGGG---CCAGACAAAGAGAAGATCGGACCCTCACTGAGTCCCCT---------------CCCATTCGC--CGG
      ananassae  -----------------GATGG-TG---------CGACTTCCTTTTGGGG---GCAAACAAAGAGAAGATCAGACCCTGGTCGGACCCCAT---------------CTCCTCCAC--TGG
  pseudoobscura  -------------TTCGGGTGTCTG---------CCACTTCCTTTGGGGA------GACAAAGAGAATATCAGACCCTGCC-----CCCTG---------------CCGCCTC----CAC
     persimilis  -------------TTCGGGTGTCTG---------CCACTTCCTTTGGGGA------GACAAAGAGAATATCAGACCCTGCC-----CCCTG---------------CCCCCTCCCCACCC
        virilis  GACGACTTCCTTTTGCAACAGA-AGACAAAGAGAAGAT----------CA---TAAGCCCCAG-------C---CCCAGCCGCAGTCCCAG---------------TCCGTGAAG-----
     mojavensis  AGTCAGGCAGTCAGGCAGTCGA-CGGCAATGCGACGACTTCCTTTT-GCA---ACAGACAAAGAGAAGATC---ATAAGCCTCAGTCCCGG---------------TCCATG--------
      grimshawi  ATTCAGTTAGCCAGTCATCCAA-TG---------CGACTTCCTTTT-GCA---ACAGACAATGAGAAGATC---ATAAGCCTCAGACCCGG---------------TCCATGGAG-----
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  TGCCCCCAGA-----------TCTGCACCTC---CGCCACT----------------CGCCATATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGG
       simulans  TGCCCCCAGA-----------TCTGCACCTC---CGCCACT-------------CGCCGCCATATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGG
      sechellia  TGCCCCCAGA-----------TCTGCACCTC---CGCCACT-------------CGCCGCCATATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGG
         yakuba  TGCCCCCAAAAGCTGCACCTCCCCTCTCCCCACTCGCCACT----------------CGCCACATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGG
         erecta  TGCCCCCAAA-----------TCCGCTCCTC---CGCCACT----------------CGCCACATAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAAT--CGGC
      ananassae  CCCCCTTGGA------GCAACTCCATCCCGC---CTCCATC----------------AGAGGGGCGGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-AAAATCCCGGG
  pseudoobscura  CTCCCCCCCT-----------GCAGCCACTC---CACCCCT-------------CACCGTCCTGTGGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGTAAAAAT--CTGG
     persimilis  CCCCCCCCTT-----------GCAGCCACTC---CACCCCT-------------CACCGTCCTGTGGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGTAAAAAT--CTCG
        virilis  ---CTGCAGA-----------G--------C---TGCAGTC------------------------AGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAGACAAGT-TAAAT--CTGT
     mojavensis  --------GA-----------G--------C---TGCAGTT------------------------GGCTCATTACGCGGGTCGTGACTTGCCAAAATGAAAAACAAGT-CAAAT--CTGT
      grimshawi  ---CCGCGGA-----------G-----ACTC---TGCAGTCTTAGTCTCCATCTCCGTCTCAGTTAGCTCATTACGCGGGTCGTGACTTGCCGAAATGAAAAACAAGT-CAACG--CAGT
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBMMMMMMMMMMMBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  CAG------------GGGAGCAGAACAC-AA----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----ATATCT------------
       simulans  CAG------------GGGAGCAGAACAC-AA----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----ATATCT------------
      sechellia  CAG------------GGGAGCAGAACAC-AA----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----ATATCT------------
         yakuba  CAG------------GGGAGCAGAACAC-AG----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----CTATCT------------
         erecta  CAG------------GGGAGCAGAACAC-AA----------GAAGAGTTTATTGCAAC---------------GGATGCTTGTCGG----AGATGCTG----CTATCT------------
      ananassae  CAG------------GGGAGCAGAACACAAA----------AAAGAGTTTATTGCAAC---------------GGATGCTTGTCAG----AGATGCTG----ATATCT------------
  pseudoobscura  CAACACACAACAGAAAGAAACAGAAAGA-AA---------CAAAAACTTTATTGCAAC---------------GGATGCTTGTCAGAAGAAGATGCTGCAGCAGATCTGCCACCAGCAGG
     persimilis  CAACACAC----------AACAGAAAGA-AA---------CAAAAACTTTATTGCAAC---------------GGATGCTTGTCAGAAGAAGATGCTGCAGCAGATCTGCCACCAGCAGG
        virilis  AAG------------GGAGCCCGAA--C-AACAATAAAAT--------TTATTGCAGC-GACAGCGGATGCTTGGATGCTTGTC------AGATGCTG----ATATCA------------
     mojavensis  AAG------------GG-------------------------------TTATTGCAGCGGACAGCGGATGCTTGGATGCTTGTC------AGATGCTG----ATATCA------------
      grimshawi  AAG------------AGCGACTAAAAGC-AA-----------------TTATTGCAGC-------GGATGCTTGGATGCTTGTC------AGATGCTG----ATATCA------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ---------------AAGAA---GGGGAAC----TTGGGAGGGGTCTTCGGAGAGGATGGGGT------------------------------------------------GGGGGT---
       simulans  ---------------AAGAA---GGGGAGC----TTGGGAGGGGTCTTCGGAGGGGATTGGGTG-----------------------------------------------GGGGGT---
      sechellia  ---------------AAGAA---GGGGAGC----TTGGGAGGTGTCTTCGGAGGGAATGGGGTG-----------------------------------------------GGGGGT---
         yakuba  ---------------AAGAA---GGGGAGC----CTGATGGGGGGCTTC-AAGGGGGTGGAGAGGT------------AGGGGGCT---------------------TCGAGGGAGT---
         erecta  ---------------AAGGA----GGGAGC----CTGGGAGGGGTCTTC-GAGGGGGCGTCGCG-----------------------------------------------GGGAGG---
      ananassae  ---------------GCGGATCAGGGGGGG----ATGCCAGG-GTCTTAAGAGCGGGTCAGGGGGTGTACAA-----AGGCGGGCTGGTGCG--------GCTGGTGGGGAAGGGGCCAA
  pseudoobscura  GGCGGCAGGAG----GGGAG---GGGGGGCGGCACCACAAGGGGTACAAAGAGTAGTTGGAGAGGGGGCAAGGGGGCACGGGGG------------GACTGCCACTGACAGGGCGGC---
     persimilis  GGCGGCAGGGGCGGCAGGGA---GGGGGGCGGCACCACAAGGGGTACAAAGAGAAGTTGGAGAGGGGGCAAGGGGGCAAGGGGGCACGGGGGGGTAGACTGCCACTGACAGGGCGGC---
        virilis  ---------------GTCGA---AGGCGGC----------GGCGT------------CGGCGGC-----------------------------------------------GACGGC---
     mojavensis  ---------------GTCGA---AGGCGGC----------GGCGGCGTCGGCGGCGACGGCGGC-----------------------------------------------GACGGC---
      grimshawi  ---------------GTTGA---AGGCGGC----------GGTGG------------CGGTGGC--------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  --------ACGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGATCGCTCGCCAGCCTCAA-----------------
       simulans  --------TCGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGATCGCTCGCCAGCCTCAA-----------------
      sechellia  -------GCCGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGATCGCTCGCCAGCCTCAA-----------------
         yakuba  ---GGGGGCCGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGCTCGCTCGCCAGCCTCAA-----------------
         erecta  ---GGCAGCCGGGTG------------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGGTCGCTCGCCAGCCTCAA-----------------
      ananassae  ATCGACGGACGGGTGGCA---------GCAGACGCAGC----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGATCGCTCGCCAGTCTCAA-----------------
  pseudoobscura  -------AGCGGGTGGCAGATGCAGACGCAGACGCAGCAAAAAATGTTAATCTCCATAAAATGGAAACAATGCGCCGGCGCAAAGA----------------------------------
     persimilis  -------AGCGGGTGGCAGATGCAGACGCAGACGCAGCAAAAAATGTTAATCTCCATAAAATGGAAACAATGCGCCGGCGCAAAGA----------------------------------
        virilis  -----------GTTG------------GCAGACGCAA-----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGA--------------CCAC----------------
     mojavensis  -----------GTTG------------GCAGACGCAA-----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGA--------------CCGATCAGC-ATC-------
      grimshawi  --------------G------------GCAGACGCAG-----AATGTTAATCTCCATAAAATGAAAACAATGCGCCGGCGCGACGA--------------CGATCGGGCGATCGAGGGCC
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----ATGTTTGGGCTCTGCAGC------TCCCGAAAG-------GCACTGGAAAA----AAAGCGAGTAT------CTATTTGAGAAAAAAATTATAGC-TGTATTATTA----------
       simulans  ----ATGTTTCAGCTCTGCAGC------TCCCGAAAG-------GCACTGGG-AA----AAAACAAGTAT------CTATTTAAG--AAAAATTATTAT-TATACTATTA----------
      sechellia  ----ATGTTTCAGTTCTGCAGC------TCCCGAAAG-------GCACTGGG--A----GAAACAAGTAC------CTATTTGAG--AAAAATTATTAT-TATACTATTA----------
         yakuba  ----ATGTTTGAGCTCTGCAGC------TCCCGAAAG-------GCACTGAG-AGAAATAAAATTAATATTTAAAACT-TTTTATTTACAACACGTTTT-TATGCTATTAAAATGCGTGG
         erecta  ----ATGTTTGAGCTCTGCAGC------TCCCGAAAG-------GCACTGGG-AA----AAAATGCATATAAACACCTATTTTAGTTGCAATTCCTTTTATATGTTATTAAAATGAATGG
      ananassae  ----CTGTTTTGAGCTTCCAGCAAACGGCCCCCATGGTCTCCTTACACTGGC-AA----AA-------AT------ATATTT-----------TATTTT-TATAAGGTTA----------
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  TCGA--------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  ----------------------CT----------------------GTATTA-------------------TTATAATATTACATACTTTATCAATTTAATATAAAGATATCCAAGTCC-
       simulans  ----------------------TTACAAGAGAATATTATTTATAAAGTATTA-------------------TTATAACTT-AAATGCATACATACTTTCATATAAAGATATCCAAACTC-
      sechellia  ----------------------TTACAAGAGGATATTATTTCAAAAGTATTA-------------------TTATAACAT------------TACTTTGATATTTAGATATCCATCTTC-
         yakuba  TTGCA--------ATATTGCACTTACTAGAGAGTATTATTTTAAAAGTATCA-------------------GTGTA---------ACTTTATTATTAAAAGATTTAATTATCCATTTTCA
         erecta  TGGCATTAGCATTATATTACACTTATTAGTGAATATTTTTTCAAAATTATTATTCCAACTCTTTTGCTTATGTGTATATT----TACTTTATTAATACAAGTTTAAGATGCCCAATCGCT
      ananassae  ----------------------T--------AGGTTTATGTTAAAAAGACCA------------------------------AGTCCTCTGATAGAAGCACAAAAAGAGGTCAAAATATT
  pseudoobscura  ------------------------------------------------------------------------------------------------------------------------
     persimilis  ------------------------------------------------------------------------------------------------------------------------
        virilis  ------------------------------------------------------------------------------------------------------------------------
     mojavensis  ------------------------------------------------------------------------------------------------------------------------
      grimshawi  ------------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBRRRRRRRRRRRBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

                 
   melanogaster  -AGCAAAAATGTAT-------------------AATAATGTTGTTTAAATAAGAGAAAAATATCGAATCTCAGTT------CTTGTTGTGTTT-ATA-TATTATGG-------CA
       simulans  -AGCAAAAATGTAT-------------------AATAGTGTTCTTTAAATAAAAGAAACATCTGGAATCTCAGTT------CATGAAGTGTTT-ATA-TTTTGTGG-------CA
      sechellia  -AGCAAAAATGTAT-------------------AATAGTGTTATTTAAATAACAGAAAAATCTGGAATCTCATTT------CTTGAAGTGTTTAATA-TTTTATGA-------TA
         yakuba  TAGTAAAAATGTGGCAAGTGTTTATATGATTTTAAAAGTATTATTGCACAAAGACAGTTAACTCGAATCTTATTT------CATTAGGTGCCT-TTATTTTTTTGG-------CA
         erecta  TGGTAAAAATGTAGA------------------AAACTCGTTATTAAAATAAGAGCAAAAAATCGAAACTTGTTT------CTTGAAGTGCTT-TTA-TTTTGTGG-------CA
      ananassae  TTTACAAAATATATC------------------ATACATATTAC------------ATTATATCACACATTATTTTATTTCCATGTTATGTTT-AGT-TTTTATTAAATTTCTCA
  pseudoobscura  -------------------------------------------------------------------------------------------------------------------
     persimilis  -------------------------------------------------------------------------------------------------------------------
        virilis  -------------------------------------------------------------------------------------------------------------------
     mojavensis  -------------------------------------------------------------------------------------------------------------------
      grimshawi  -------------------------------------------------------------------------------------------------------------------
        Summary  BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB


kni