Computer Science, Machine Learning, Language Technologies, Computational Biology | School of Computer Science | Carnegie Mellon

Baycis : a generalized, hierarchical HMM for transcription factor binding site discovery in Metazoan genomes

CSMET : a multi-resolution mixture of evolutionary tree approach to transcription factor binding site detection for aligned genomes in eukaryotes

DISCOVER : a discriminative, conditional random field model for factor binding site discovery in Metazoan genomes

IMM-PGE : IMM-PGE focuses on the development of accurate and automatic image analysis systems to facilitate efficient mining of complex temporal-spatial mRNA patterns, essential for functional genomics and regulatory network inference in higher organisms.

mStruct : A New Admixture Model for Inference of Population Structure in Light of Both Genetic Admixing and Allele Mutations

N/w modelling : Developing new statistical formalisms and computational methodologies for modeling and inference the semantic underpinnings of network entities, and investigating how these aspects influence the network topology and its temporal evolution during biological and sociological processes. It also studies a number of yet unexplored topics such as discriminative learning of network structures, recovering temporally evolving network sequences, and related theoretical issues.

SPECTRUM : SPECTRUM is a program for jointly inferring population structure and recombination events using multi-locus SNP haplotypes.

KELLER : A kernel-reweighted logistic regression method (KELLER) for reverse engineering the dynamic interactions between genes based on their time series of expression values.

TESLA:TESLA is software for estimating time-varying network from time-series of nodal attributes using the l1-regularized total-variation penality. It is appropriate for estimating the structure of networks with sharp structual changes.

GFlasso : A regularized-regression method for discovering genotypes (inputs) influencing multiple correlated traits (outputs) in an association analysis of a quantitative trait network.
Haploi : A haplotype inference program for multi-population data.

(C) SAILING Lab, 2008 Copyright of published papers held by publishing bodies in question