@INPROCEEDINGS {andreemnlp08,
title = {Stacking Dependency Parsers},
author = {Martins, Andr\'e F.T, and Das, Dipanjan and Smith, Noah A. and Xing, Eric P.},
booktitle = {Proceedings of EMNLP 2008},
year = {2008} }

@INPROCEEDINGS {junnips08,
title = {Partially Observed Maximum Entropy Discrimination Markov Networks},
author = {Zhu, Jun and and Xing, Eric and Zhang, Bing},
booktitle = {Proceedings of NIPS 2008},
year = {2008} }

@INPROCEEDINGS {edonips08,
title = { Mixed Membership Stochastic Blockmodel},
author = {Airoldi, Edo and Blei, David and Fienberg, Steve and Xing, Eric},
booktitle = {Proceedings of NIPS 2008},
year = {2008} }

@INPROCEEDINGS {amreccv08,
title = {Training Hierarchical Feed-forward Visual Recognition Models Using Transfer Learning from Pseudo-Tasks},
author = {Ahmed, Amr and Yu, Kai and Xu, Wei and Gong, Yihong and Xing, Eric},
booktitle = {Proceedings of ECCV 2008},
year = {2008} }

@INPROCEEDINGS {weihaopkdd08,
title = {A Joint Topic and Perspective Model for Ideological Discourse},
author = {Lin, Wei-Hao and Xing, Eric P. and Hauptmann, Alexander},
booktitle = {Proceedings of ECML PKDD 2008, Part 2, LNAI-5212},
year = {2008} }

@INPROCEEDINGS {rameshkdd08,
title = { Sparse Feature Joint Latent Topic Models for text and citations},
author = {Nallapati, Ramesh and Ahmed, Amr and Xing, Eric P. and Cohen, William},
booktitle = {Proceedings of KDD 2008},
year = {2008} }

@INPROCEEDINGS {seyounguai08,
title = {Sparse Feature Learning in High-Dimensional Space via Block Regularized Regression},
author = {Kim, Seyoung and Xing, Eric P.},
booktitle = {Proceedings of UAI 2008},
year = {2008} }

@INPROCEEDINGS {hannekecolt08,
title = {The True Sample Complexity of Active Learning},
author = {Balcan, Maria-Florina and Hanneke, Steve and Wortman, Jennifer},
booktitle = {Proceedings of COLT 2008},
year = {2008} }

@INPROCEEDINGS {junicml08,
title = {Laplace Maximum Margin Markov Networks},
author = {Zhu, Jun and Zhang, Bing and Xing, Eric P.},
booktitle = {Proceedings of ICML 2008},
year = {2008} }

@INPROCEEDINGS {suyashicml08,
title = {mStruct: A New Admixture Model for Inference of Population Structure in Light of Both Genetic Admixing and Allele Mutations},
author = {Shringarpure, Suyash and Xing, Eric P.},
booktitle = {Proceedings of ICML 2008},
year = {2008}}

@INPROCEEDINGS {andreicml08,
title = {Nonextensive Entropic Kernels},
author = {Martins, Andre and Figueiredo, Mario and Aguiar, Pedro and Smith, Noah and Xing, Eric P.},
booktitle = {Proceedings of ICML 2008},
year = {2008} }

@ARTICLE {pradiptaploscb08,
title = {CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing},
author = {Ray, Pradipta and Shringarpure, Suyash and Kolar, Mladen and Xing, Eric P.},
journal = {Public Library of Science Computational Biology},
volume = {4},
number = {6},
month = {June},
year = {2008} }

@INPROCEEDINGS {fanvldb08,
title = {C-DEM: A Multi-Modal Query System for Drosophila Embryo Databases},
author = {Guo, Fan and Li, Lei and and Faloutsos, C. and Xing, Eric P.},
booktitle = {Proceedings of SDM 2008},
year = {2008} }

@INPROCEEDINGS {amrsiam08,
title = {Dynamic Non-Parametric Mixture Models and the Recurrent Chinese Restaurant Process},
author = {Ahmed, Amr and Xing, Eric P.},
booktitle = {Proceedings of SDM 2008},
year = {2008} }

@INPROCEEDINGS {zhensiam08,
title = {Semi-supervised Learning Based on Semiparametric Regularization},
author = {Guo, Zhen and Zhang, Zhongfei and Xing, Eric P. and Faloutsos, Christos},
booktitle = {Proceedings of SDM 2008},
year = {2008} }

@INPROCEEDINGS {linrecomb08,
title = {BayCis: a Bayesian hierarchical HMM for cis-regulatory module decoding in metazoan genomes},
author = {Lin, Tien-Ho and Ray, Pradipta and Sandve, Geir K. and Uguroglu, Selen and Xing, Eric P.},
booktitle = {Proceedings of RECOMB 2008},
year = {2008} }

@ARTICLE {yangjsadm08,
title = {Harmonium Models for Video Classification},
author = {Yang, Jun and Yan, Rong and Liu, Yan and Xing, Eric P.},
journal = {Journal of Statistical Analysis and Data Mining},
volume = {1}, number={1}, pages = {23--27}, year = {2008} }

@INCOLLECTION {weicrc08,
title = {A Survey of cDNA Microarray Normalization and a Comparison by k-NN Classification},
author = {Wu, Wei and Xing, Eric P.},
booktitle = {Methods in Microarray Normalization},
publisher = {CRC Press}, year = {2008} }

@INPROCEEDINGS {hannekenips07,
title = {Asymptotic Active Learning},
author = {Balcan, Maria-Florina and Even-Dar, Eyal and Hanneke, Steve and Kearns, Michael and Mansour, Yishay and Wortman, Jennifer},
booktitle = {Proceedings of NIPS Workshop on Principles of Learning Problem Design 2007},
year = {2007} }

@INPROCEEDINGS {bingnips07,
title = {HM-BiTAM: Bilingual Topic Exploration, Word Alignment, and Translation},
author = {Zhao, Bing and Xing, Eric P.},
booktitle = {Proceedings of NIPS 2007},
year = {2007} }

@INPROCEEDINGS {lillianiros07,
title = {Feature selection for grasp recognition from optical markers},
author = {Chang, Lillian Y. and Pollard, Nancy S. and Mitchell, Tom M. and Xing, Eric P.},
booktitle = {Proceedings of IROS 2007},
year = {2007} }

@TECHREPORT {erictr07107,
title = {A Nonparametric Bayesian Approach for Haplotype Reconstruction from Single and Multi-Population Data},
author = {Xing, Eric P. and Sohn, Kyung-Ah},
institution = {Machine Learning Dept, Carnegie Mellon University},
year = {2007} }

@INPROCEEDINGS {kyungahismb07,
title = {Spectrum: Joint Bayesian Inference of Population Structure and Recombination Event},
author = {Sohn, Kyung-Ah and Xing, Eric P.},
booktitle = {Proceedings of ISMB 2007},
year = {2007} }

@INPROCEEDINGS {hannekeicml07,
title = {A Bound on the Label Complexity of Agnostic Active Learning},
author = {Hanneke, Steve},
booktitle = {Proceedings of ICML 2007},
year = {2007} }

@INPROCEEDINGS {fanicml07,
title = {Recovering Temporally Rewiring Networks: A model-based approach},
author = {Guo, Fan and Hanneke, Steve and Fu, Wenjie and Xing, Eric P.},
booktitle = {Proceedings of ICML 2007},
year = {2007} }

@INPROCEEDINGS {leoncvpr07,
title = {Learning GMRF Structures for Spatial Priors},
author = {Gu, Leon and Xing, Eric P. and Kanade, Takeo},
booktitle = {Proceedings of CVPR 2007},
year = {2007} }

@INPROCEEDINGS {hannekecolt07,
title = {Teaching Dimension and the Complexity of Active Learning},
author = {Hanneke, Steve},
booktitle = {Proceedings of COLT 2007},
year = {2007} }

@INPROCEEDINGS {zhenkdd07,
title = { Enhanced Max Margin Learning on Multimodal Data Mining in a Multimedia Database},
author = {Guo, Zhen and Zhang, Zhongfei and Xing, Eric P. and Faloutsos, Christos},
booktitle = {Proceedings of KDD 2007},
year = {2007} }

@INPROCEEDINGS {zhenicme07,
title = {A Max Margin Framework on Image Annotation and Multimodal Image Retrieval},
author = {Guo, Zhen and Zhang, Zhongfei and Xing, Eric P. and Faloutsos, Christos},
booktitle = {Proceedings of ICME 2007},
year = {2007} }

@ARTICLE {ericjcb07,
title = {Bayesian Haplotype Inference via the Dirichlet Process},
author = {Xing, Eric P. and Jordan, Michael and Sharan, Roded},
journal = {Journal of Computational Biology},
volume = {14}, number = {3}, pages = {267--284}, year = {2007} }

@ARTICLE {ericba07,
title = {Hidden Markov Dirichlet Process: Modeling Genetic Recombination in Open Ancestral Space},
author = {Xing, Eric P. and Sohn, Kyung-Ah},
journal = {Bayesian Analysis},
volume = {2}, number = {3}, year = {2007} }

@INPROCEEDINGS {amraistat07,
title = {On Tight Approximate Inference of Logistic-Normal Admixture Model},
author = {Ahmed, Amr and Xing, Eric P.},
booktitle = {Proceedings of AISTAT 2007},
year = {2007} }

@INPROCEEDINGS {junsdm07,
title = {Harmonium-Based Models for Semantic Video Representation and Classification},
author = {Yang, Jun and Liu, Yan and Xing, Eric P. and Hauptmann, Alex},
booktitle = {Proceedings of AISTAT 2007},
year = {2007} }

@INPROCEEDINGS {heturecomb07,
title = {Free Energy Estimates of All-atom Protein Structures Using Generalized Belief Propagation},
author = {Kamisetty, Hetunandan and Xing, Eric P. and Christopher J.},
booktitle = {Proceedings of RECOMB 2007},
year = {2007} }

@INPROCEEDINGS {yanxinrecomb07,
title = {GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data},
author = {Shi, Yanxin and Guo, Fan and Wu, Wei and Xing, Eric P.},
booktitle = {Proceedings of RECOMB 2007},
year = {2007} }

@INPROCEEDINGS {fannips06,
title = {Reverse engineering temporally rewiring gene networks},
author = {Guo, Fan and Fu, Wenjie and Shi, Yanxin and Xing, Eric P.},
booktitle = {NIPS Workshop on New Problems and Methods in Computational Biology, NIPS 2006},
year = {2006} }

@TECHREPORT {fanlitr06117,
title = {Inferring regulatory networks using a hierarchical Bayesian graphical Gaussian model},
author = {Li, Fan and Yang, Yiming and Xing, Eric P.},
institution = {Machine Learning Department, Carnegie Mellon University},
year = {2006} }

@TECHREPORT {yanxintr06115,
title = {GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data},
author = {Shi, Yanxin and Guo, Fan and Wu, Wei and Xing, Eric P.},
institution = {Machine Learning Department, Carnegie Mellon University},
year = {2006} }

@TECHREPORT {kyungahtr06111,
title = {A New Nonparametric Bayesian Model for Genetic Inference in Open Ancestral Space},
author = {Xing, Eric P. and Sohn, Kyung-Ah},
institution = {Machine Learning Department, Carnegie Mellon University},
year = {2006} }

@INPROCEEDINGS {kyungahnips06,
title = { Hidden Markov Dirichlet Process: Modeling Genetic Recombination in Open Ancestral Space},
author = {Sohn, Kyung-Ah and Xing, Eric P.},
booktitle = {Proceedings of NIPS 2006},
year = {2006} }

@INPROCEEDINGS {jiayukdd06,
title = {Automatic Mining of Fruit Fly Embryo Images},
author = {Pan, Jia-Yu and Balan, Andre and Xing, Eric P. and Traina, Agma and Faloutsos, Christos},
booktitle = {Proceedings of KDD 2006},
year = {2006} }

@INPROCEEDINGS {bingacl06,
title = {BiTAM: Bilingual Topic AdMixture Models for Word Alignment},
author = {Zhao, Bing and Xing, Eric P.},
booktitle = {Proceedings of ACL 2006},
year = {2006} }

@INPROCEEDINGS {tienhoismb06,
title = {Interpreting Anonymous DNA Samples From Mass Disasters - probabilistic forensic inference using genetic markers},
author = {Lin, Tien-ho and Myers, Eugene W. and Xing, Eric P.},
booktitle = {Proceedings of ISMB 2006},
year = {2006} }

@INPROCEEDINGS {ericicml06,
title = {Bayesian Multi-Population Haplotype Inference via a Hierarchical Dirichlet Process Mixture},
author = {Xing, Eric P. and Sohn, Kyung-Ah and Jordan, Michael I. and Teh, Yee-Whye},
booktitle = {Proceedings of ICML 2006},
year = {2006} }

@INPROCEEDINGS {hannekeicml06,
title = {An Analysis of Graph Cut Size for Transductive Learning},
author = {Hanneke, Steve},
booktitle = {Proceedings of ICML 2006},
year = {2006} }

@INPROCEEDINGS {steveicml06,
title = {Bayesian Multi-Population Haplotype Inference via a Hierarchical Dirichlet Process Mixture},
author = {Hanneke, Steve and Xing, Eric P.},
booktitle = {Proceedings of Workshop on Statistical Network Analysis, ICML 2006},
year = {2006}
}

@TECHREPORT {fantr06103,
title = {Bayesian Exponential Family Harmoniums},
author = {Guo, Fan and Xing, Eric P.},
institution = {Machine Learning Department, Carnegie Mellon University},
year = {2006} }

@INPROCEEDINGS {edobs06,
title = {Latent mixed-membership allocation models of relational and multivariate attribute data},
author = {Airoldi, Edo and Blei, David M. and Fienberg, Steve E. and Xing, Eric P.},
booktitle = {Valencia & ISBA Joint World Meeting on Bayesian Statistics 2006},
year = {2006} }

@INPROCEEDINGS {edoenar06,
title = {Mixed membership stochastic block models for relational data, with applications to protein-protein interactions},
author = {Airoldi, Edo and Blei, David M. and Xing, Eric P. and Fienberg, Steve E.},
booktitle = {Proceedings of International Biometric Society-ENAR Annual Meetings 2006},
year = {2006} }

@TECHREPORT {erictr05115,
title = {On Topic Evaluation},
author = {Xing, Eric P.},
institution = {Centre for Automated Learning and Discovery, Carnegie Mellon University},
year = {2005} }

@TECHREPORT {erictr05114,
title = {Dynamic Nonparametric Bayesian Models and the Birth-Death Process},
author = {Xing, Eric P.},
institution = {Centre for Automated Learning and Discovery, Carnegie Mellon University},
year = {2005} }

@ARTICLE {weibioinf05,
title = { Comparison of normalization methods for CodeLink Bioarray data},
author = {Wu, Wei and Dave, Nilesh and Tseng, George C. and Richards, Thomas and Xing, Eric P. and Kaminsky, Naftali},
journal = {BMC Bioinformatics 6:309},
year = {2005} }

@INPROCEEDINGS {fanlinips05,
title = {From Lasso regression to Feature vector machine},
author = {Li, Fan and Yang, Yiming and Xing, Eric P.},
booktitle = {Proceedings of NIPS 2005},
year = {2005} }

@INPROCEEDINGS {weibioinf05-2,
title = {Evaluation of normalization methods for cDNA microarray data by k-NN classification},
author = {Wu, Wei and Xing, Eric P. and Myers, Connie and Mian, I. Saira and Bissell, Mina J.},
journal = {BMC Bioinformatics 6:191},
year = {2005} }

@INPROCEEDINGS {edolinkkdd05,
title = {A Latent Mixed Membership Model for Relational Data},
author = {Airoldi, Edo and Blei, David and Xing, Eric P. and Fienberg, Steve},
booktitle = {Proceedings of LINK-KDD 2005},
year = {2005} }

@INPROCEEDINGS {ericuai05,
title = {Mining Associated Text and Images with Dual-Wing Harmoniums},
author = {Xing, Eric P. and Yan, Rong and Hauptmann, Alex},
booktitle = {Proceedings of UAI 2005},
year = {2005} }

@INPROCEEDINGS {yanicml05,
title = {Predicting Protein Folds with Structural Repeats Using a Chain Graph Model},
author = {Liu, Yan and Xing, Eric P. and Carbonell, Jaime},
booktitle = {Proceedings of ICML 2005},
year = {2005} }

@INPROCEEDINGS {bingacl05,
title = {Bilingual Word Spectral Clustering for Statistical Machine Translation},
author = {Zhao, Bing and Xing, Eric P. and Waibel, Alex},
booktitle = {ACL-Workshop-WPT 2005},
year = {2005} }

@PHDTHESIS {ericthesis04,
title = {Probabilistic graphical models and algorithms for genomic analysis},
author = {Xing, Eric P.},
school = {University of California, Berkeley},
year = {2004} }